Sb03g042310 (Sorghum bicolor)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Sb03g042310 T245973_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.879 0.879
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb03g042310.1 LOB 33 131
Sb03g042310.2 LOB 33 131

Links

Other LOB family TFs
Other Sorghum bicolor TFs

255 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G118250 Zea mays GRMZM2G118250 I 1.000
Si002599m.g Setaria italica Si002599m.g I 1.000
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 1.000
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.990
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.980
F775_20715 Aegilops tauschii F775_20715 I 0.970
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.970
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.970
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.969
OB01G48740 Oryza brachyantha OB01G48740 I 0.960
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.960
LBD6 Oryza indica BGIOSGA004955 I 0.949
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.949
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.949
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.949
OBART01G39990 Oryza barthii OBART01G39990 I 0.949
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.949
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.949
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.949
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.949
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.949
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.949
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.949
LBD6 Oryza sativa OS01G0889400 I 0.949
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.939
F775_21760 Aegilops tauschii F775_21760 I 0.939
GRMZM2G133806 Zea mays GRMZM2G133806 I 0.939
OB05G24560 Oryza brachyantha OB05G24560 I 0.939
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.939
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.939
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.939
OS05G0417000 Oryza sativa OS05G0417000 I 0.939
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.939
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.939
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.929
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.929
Si024114m.g Setaria italica Si024114m.g I 0.929
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.929
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.919
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.889
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.889
LBD6 Arabidopsis thaliana AT1G65620 D 0.879
Bo2g051420 Brassica oleracea Bo2g051420 I 0.879
Bra039733 Brassica rapa Bra039733 I 0.879
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.879
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.879
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.879
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.879
TCM_024217 Theobroma cacao TCM_024217 I 0.879
AS2 Vitis vinifera VIT_00s0340g00090 I 0.879
29929.m004500 Ricinus communis 29929.m004500 I 0.879
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.879
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.879
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.879
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.879
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.879
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.879
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.879
MDP0000273432 Malus domestica MDP0000273432 I 0.879
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.879
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.879
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.879
PK18922.1 Cannabis sativa PK18922.1 I 0.877
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.869
mgf014755m Mimulus guttatus mgf014755m I 0.869
MDP0000643326 Malus domestica MDP0000643326 I 0.869
GSMUA_Achr7G23710_001 Musa acuminata GSMUA_Achr7G23710_001 I 0.867
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.859
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.859
Cla005851 Citrullus lanatus Cla005851 I 0.859
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.859
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.859
Traes_1DL_B8551270A Triticum aestivum Traes_1DL_B8551270A I 0.852
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.848
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.848
GSMUA_Achr11G26500_001 Musa acuminata GSMUA_Achr11G26500_001 I 0.848
GSMUA_Achr5G25770_001 Musa acuminata GSMUA_Achr5G25770_001 I 0.848
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.848
Ca_20200 Cicer arietinum Ca_20200 I 0.848
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.848
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.848
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.848
LPERR05G13240 Leersia perrieri LPERR05G13240 I 0.825
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.818
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.808
GRMZM2G096064 Zea mays GRMZM2G096064 I 0.808
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.798
TCM_000560 Theobroma cacao TCM_000560 I 0.798
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.798
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.798
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.798
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.798
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.798
Bo7g064360 Brassica oleracea Bo7g064360 I 0.788
Bra012112 Brassica rapa Bra012112 I 0.788
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.788
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.788
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.788
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.788
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.788
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.788
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.787
F775_33210 Aegilops tauschii F775_33210 I 0.781
PK13228.1 Cannabis sativa PK13228.1 I 0.781
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.778
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.778
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.778
cassava16840.m1 Manihot esculenta cassava16840.m1 I 0.778
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.778
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.778
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.778
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.778
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.778
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.778
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.778
LBD36 Arabidopsis thaliana AT5G66870 I 0.768
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.768
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.768
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.768
Pm026450 Prunus mume Pm026450 I 0.768
29676.m001633 Ricinus communis 29676.m001633 I 0.768
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.768
Bo2g167820 Brassica oleracea Bo2g167820 I 0.758
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.758
GLYMA04G11991 Glycine max GLYMA04G11991 I 0.758
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.758
GLYMA11G06210 Glycine max GLYMA11G06210 I 0.758
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.758
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.758
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.758
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.758
Ca_02124 Cicer arietinum Ca_02124 I 0.758
Cla020438 Citrullus lanatus Cla020438 I 0.758
mgf004296m Mimulus guttatus mgf004296m I 0.758
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.758
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.758
Lus10005313.g Linum usitatissimum Lus10005313.g I 0.758
MDP0000562305 Malus domestica MDP0000562305 I 0.758
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.758
MTR_5g017950 Medicago truncatula MTR_5g017950 I 0.747
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.747
Ca_02125 Cicer arietinum Ca_02125 I 0.747
Ca_11161 Cicer arietinum Ca_11161 I 0.747
Pm010483 Prunus mume Pm010483 I 0.747
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.747
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I 0.747
MDP0000310871 Malus domestica MDP0000310871 I 0.747
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.747
GSMUA_Achr2G13400_001 Musa acuminata GSMUA_Achr2G13400_001 I 0.739
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.737
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.737
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.737
VIT_07s0197g00040 Vitis vinifera VIT_07s0197g00040 I 0.737
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.737
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.737
MDP0000133546 Malus domestica MDP0000133546 I 0.737
MDP0000777060 Malus domestica MDP0000777060 I 0.737
Pavir.J09541 Panicum virgatum Pavir.J09541 I 0.737
ONIVA05G17300 Oryza nivara ONIVA05G17300 N 0.732
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.727
LBD10 Arabidopsis thaliana AT2G23660 I 0.727
Bo9g017470 Brassica oleracea Bo9g017470 I 0.727
F775_25656 Aegilops tauschii F775_25656 I 0.727
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.727
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.727
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.727
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.727
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.727
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.727
OB01G14220 Oryza brachyantha OB01G14220 I 0.727
OBART01G04470 Oryza barthii OBART01G04470 I 0.727
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.727
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.727
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.727
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.727
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.727
OS01G0169400 Oryza sativa OS01G0169400 I 0.727
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.727
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.727
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.727
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.727
LBD10 Arabidopsis lyrata scaffold_400352.1 I 0.727
Si002632m.g Setaria italica Si002632m.g I 0.727
Si036905m.g Setaria italica Si036905m.g I 0.727
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.727
TCM_012190 Theobroma cacao TCM_012190 I 0.727
LOB Vitis vinifera VIT_17s0000g09010 I 0.727
Ca_08824 Cicer arietinum Ca_08824 I 0.727
Cla019510 Citrullus lanatus Cla019510 I 0.727
Pm024312 Prunus mume Pm024312 I 0.727
30147.m013890 Ricinus communis 30147.m013890 I 0.727
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.727
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.727
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.727
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.727
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.727
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.727
MDP0000130659 Malus domestica MDP0000130659 I 0.727
MDP0000254288 Malus domestica MDP0000254288 I 0.727
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.727
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.727
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.727
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.727
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.723
LOB Arabidopsis thaliana AT5G63090 D 0.717
Bo3g104760 Brassica oleracea Bo3g104760 I 0.717
Bra038606 Brassica rapa Bra038606 I 0.717
GLYMA05G09950 Glycine max GLYMA05G09950 I 0.717
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.717
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.717
Sb01g014650 Sorghum bicolor Sb01g014650 I 0.717
LOB Arabidopsis lyrata scaffold_802995.1 I 0.717
Ca_07463 Cicer arietinum Ca_07463 I 0.717
Cla017388 Citrullus lanatus Cla017388 I 0.717
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.717
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.717
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.717
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.717
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.717
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.717
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.717
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.717
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.717
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.717
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.717
MDP0000197526 Malus domestica MDP0000197526 I 0.717
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.717
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.717
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.717
Thhalv10000525m.g Eutrema salsugineum Thhalv10000525m.g I 0.717
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.717
GSMUA_Achr3G21730_001 Musa acuminata GSMUA_Achr3G21730_001 N 0.709
BGIOSGA013119 Oryza indica BGIOSGA013119 I 0.707
Bo4g151770 Brassica oleracea Bo4g151770 I 0.707
Bra032153 Brassica rapa Bra032153 I 0.707
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.707
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.707
OGLUM03G26820 Oryza glumaepatula OGLUM03G26820 I 0.707
ONIVA11G15310 Oryza nivara ONIVA11G15310 I 0.707
ORGLA03G0240600 Oryza glaberrima ORGLA03G0240600 I 0.707
ORUFI03G26840 Oryza rufipogon ORUFI03G26840 I 0.707
OS03G0612400 Oryza sativa OS03G0612400 I 0.707
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.707
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.707
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.707
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.707
mgf003146m Mimulus guttatus mgf003146m I 0.707
Bostr.27895s0126 Boechera stricta Bostr.27895s0126 N 0.707
Cagra.2475s0001 Capsella grandiflora Cagra.2475s0001 I 0.707
Carubv10025704m.g Capsella rubella Carubv10025704m.g I 0.707
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.707
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.707
MDP0000848210 Malus domestica MDP0000848210 I 0.707
gw1.7.209.1 Physcomitrella patens gw1.7.209.1 I 0.701