Gorai.006G033100 (Gossypium raimondii)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Gorai.006G033100 T246961_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.859 0.859
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G033100.1 LOB 10 108
Gorai.006G033100.2 LOB 10 108

Links

Other LOB family TFs
Other Gossypium raimondii TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_016952 Theobroma cacao TCM_016952 I 0.949
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.939
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.939
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.939
Ca_24372 Cicer arietinum Ca_24372 I 0.939
Pm015649 Prunus mume Pm015649 I 0.939
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.939
PK26472.1 Cannabis sativa PK26472.1 I 0.939
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.929
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.929
29917.m001993 Ricinus communis 29917.m001993 I 0.929
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.929
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.929
MDP0000848210 Malus domestica MDP0000848210 I 0.929
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.919
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.919
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.919
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.919
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.919
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.909
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.909
Cla017388 Citrullus lanatus Cla017388 I 0.909
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.909
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.909
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.909
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.909
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.909
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.899
Cla010600 Citrullus lanatus Cla010600 I 0.899
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.889
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.889
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.889
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.879
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.869
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.869
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.869
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.869
TCM_012190 Theobroma cacao TCM_012190 I 0.869
LOB Vitis vinifera VIT_17s0000g09010 I 0.869
Cla019510 Citrullus lanatus Cla019510 I 0.869
30147.m013890 Ricinus communis 30147.m013890 I 0.869
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.869
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.869
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.869
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.869
MDP0000130659 Malus domestica MDP0000130659 I 0.869
MDP0000254288 Malus domestica MDP0000254288 I 0.869
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.869
LBD25 Arabidopsis thaliana AT3G27650 I 0.859
LOB Arabidopsis thaliana AT5G63090 D 0.859
Bo3g104760 Brassica oleracea Bo3g104760 I 0.859
Bra038606 Brassica rapa Bra038606 I 0.859
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.859
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.859
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.859
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.859
LOB Arabidopsis lyrata scaffold_802995.1 I 0.859
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.859
Ca_08824 Cicer arietinum Ca_08824 I 0.859
Pm024312 Prunus mume Pm024312 I 0.859
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.859
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.859
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.859
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.859
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.859
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.859
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.859
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.859
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.859
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.859
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.859
PK21510.1 Cannabis sativa PK21510.1 I 0.859
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.859
Bo9g017470 Brassica oleracea Bo9g017470 I 0.848
Bra025294 Brassica rapa Bra025294 I 0.848
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.848
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.848
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.848
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.848
Ca_07463 Cicer arietinum Ca_07463 I 0.848
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.848
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.848
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.848
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.848
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.838
Bo7g085860 Brassica oleracea Bo7g085860 I 0.838
Bo9g008330 Brassica oleracea Bo9g008330 I 0.838
Bra039072 Brassica rapa Bra039072 I 0.838
F775_25656 Aegilops tauschii F775_25656 I 0.838
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.838
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.838
OB01G14220 Oryza brachyantha OB01G14220 I 0.838
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.838
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.838
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.838
Si002632m.g Setaria italica Si002632m.g I 0.838
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.838
mgf003146m Mimulus guttatus mgf003146m I 0.838
mgf024603m Mimulus guttatus mgf024603m I 0.838
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.838
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.838
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.838
Bra035860 Brassica rapa Bra035860 I 0.828
OBART01G04470 Oryza barthii OBART01G04470 I 0.828
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.828
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.828
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.828
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.828
OS01G0169400 Oryza sativa OS01G0169400 I 0.828
Bo2g144870 Brassica oleracea Bo2g144870 I 0.818
Bra033019 Brassica rapa Bra033019 I 0.818
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.818
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.818
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.818
F775_33210 Aegilops tauschii F775_33210 I 0.808
PK18922.1 Cannabis sativa PK18922.1 I 0.807
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.805
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.798
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.798
mgf016361m Mimulus guttatus mgf016361m I 0.798
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.796
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.788
Cla003499 Citrullus lanatus Cla003499 I 0.788
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.788
PK29334.1 Cannabis sativa PK29334.1 I 0.781
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.778
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.778
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.778
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.778
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.769
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.768
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.760
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.747
GLYMA01G32340 Glycine max GLYMA01G32340 N 0.742
PK21617.1 Cannabis sativa PK21617.1 I 0.739
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.737
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.737
AS2 Vitis vinifera VIT_00s0340g00090 I 0.737
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.737
LBD6 Arabidopsis thaliana AT1G65620 D 0.727
Bo2g051420 Brassica oleracea Bo2g051420 I 0.727
Bra039733 Brassica rapa Bra039733 I 0.727
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.727
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.727
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.727
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.727
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.727
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.727
TCM_024217 Theobroma cacao TCM_024217 I 0.727
Ca_20200 Cicer arietinum Ca_20200 I 0.727
Cla005851 Citrullus lanatus Cla005851 I 0.727
29929.m004500 Ricinus communis 29929.m004500 I 0.727
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.727
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.727
mgf014755m Mimulus guttatus mgf014755m I 0.727
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.727
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.727
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.727
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.727
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.727
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.727
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.727
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.727
MDP0000273432 Malus domestica MDP0000273432 I 0.727
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.727
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.718
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.717
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.717
F775_21760 Aegilops tauschii F775_21760 I 0.717
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.717
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.717
OB05G24560 Oryza brachyantha OB05G24560 I 0.717
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.717
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.717
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.717
OS05G0417000 Oryza sativa OS05G0417000 I 0.717
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.717
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.717
PRUPE_ppa012284mg Prunus persica PRUPE_ppa012284mg N 0.717
Si036905m.g Setaria italica Si036905m.g I 0.717
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.717
TCM_000560 Theobroma cacao TCM_000560 I 0.717
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.717
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.717
Pm018957 Prunus mume Pm018957 N 0.717
29676.m001633 Ricinus communis 29676.m001633 I 0.717
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.717
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.717
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.717
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.717
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.717
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.717
MDP0000643326 Malus domestica MDP0000643326 I 0.717
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.717
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.717
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.717
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.717
Bo2g167820 Brassica oleracea Bo2g167820 I 0.707
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.707
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.707
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.707
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.707
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
Sb01g014650 Sorghum bicolor Sb01g014650 I 0.707
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.707
Si002599m.g Setaria italica Si002599m.g I 0.707
Traes_4AL_C060BF9F6 Triticum aestivum Traes_4AL_C060BF9F6 I 0.707
Traes_4BS_C1F4F41E9 Triticum aestivum Traes_4BS_C1F4F41E9 I 0.707
Traes_4DS_72ABC3EE5 Triticum aestivum Traes_4DS_72ABC3EE5 I 0.707
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.707
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.707
Ca_11161 Cicer arietinum Ca_11161 I 0.707
Pm026450 Prunus mume Pm026450 I 0.707
29814.m000742 Ricinus communis 29814.m000742 N 0.707
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.707
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.707
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.707
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.707
Ciclev10032862m.g Citrus clementina Ciclev10032862m.g N 0.707
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.707
Gorai.013G016900 Gossypium raimondii Gorai.013G016900 N 0.707
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.707
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.707
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.707
orange1.1g036565m.g Citrus sinensis orange1.1g036565m.g N 0.707
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.707
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.707
Pavir.J09541 Panicum virgatum Pavir.J09541 I 0.707
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.707
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.707
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.707
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.707