Eucgr.J02237 (Eucalyptus grandis)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Eucgr.J02237 T246860_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.889 0.889
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.J02237.1 LOB 11 109

Links

Other LOB family TFs
Other Eucalyptus grandis TFs

201 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29917.m001993 Ricinus communis 29917.m001993 I 0.980
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.980
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.970
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.970
Pm015649 Prunus mume Pm015649 I 0.970
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.970
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.970
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.970
PK26472.1 Cannabis sativa PK26472.1 I 0.970
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.960
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.949
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.949
Ca_24372 Cicer arietinum Ca_24372 I 0.949
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.949
MDP0000848210 Malus domestica MDP0000848210 I 0.949
TCM_016952 Theobroma cacao TCM_016952 I 0.939
Cla010600 Citrullus lanatus Cla010600 I 0.939
Cla017388 Citrullus lanatus Cla017388 I 0.939
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.939
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.939
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.929
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.929
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.929
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.929
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.929
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.929
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.929
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.929
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.919
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.919
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.919
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.909
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.909
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.909
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.899
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.899
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.899
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.899
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.899
TCM_012190 Theobroma cacao TCM_012190 I 0.899
LOB Vitis vinifera VIT_17s0000g09010 I 0.899
Cla019510 Citrullus lanatus Cla019510 I 0.899
30147.m013890 Ricinus communis 30147.m013890 I 0.899
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.899
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.899
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.899
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.899
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.899
MDP0000130659 Malus domestica MDP0000130659 I 0.899
MDP0000254288 Malus domestica MDP0000254288 I 0.899
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.899
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.889
LOB Arabidopsis thaliana AT5G63090 D 0.889
Bo3g104760 Brassica oleracea Bo3g104760 I 0.889
Bra038606 Brassica rapa Bra038606 I 0.889
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.889
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.889
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.889
OB01G14220 Oryza brachyantha OB01G14220 I 0.889
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.889
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.889
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.889
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.889
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.889
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.889
LOB Arabidopsis lyrata scaffold_802995.1 I 0.889
Si002632m.g Setaria italica Si002632m.g I 0.889
Ca_08824 Cicer arietinum Ca_08824 I 0.889
Pm024312 Prunus mume Pm024312 I 0.889
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.889
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.889
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.889
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.889
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.889
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.889
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.889
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.889
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.889
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.889
Bo9g017470 Brassica oleracea Bo9g017470 I 0.879
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.879
OBART01G04470 Oryza barthii OBART01G04470 I 0.879
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.879
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.879
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.879
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.879
OS01G0169400 Oryza sativa OS01G0169400 I 0.879
mgf024603m Mimulus guttatus mgf024603m I 0.879
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.879
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.879
LBD25 Arabidopsis thaliana AT3G27650 I 0.869
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.869
F775_25656 Aegilops tauschii F775_25656 I 0.869
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.869
Ca_07463 Cicer arietinum Ca_07463 I 0.869
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.869
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.869
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.869
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.869
Bra035860 Brassica rapa Bra035860 I 0.859
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.859
mgf003146m Mimulus guttatus mgf003146m I 0.859
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.859
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.859
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.859
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.859
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.859
PK21510.1 Cannabis sativa PK21510.1 I 0.859
Bo7g085860 Brassica oleracea Bo7g085860 I 0.848
Bo9g008330 Brassica oleracea Bo9g008330 I 0.848
Bra025294 Brassica rapa Bra025294 I 0.848
Bra039072 Brassica rapa Bra039072 I 0.848
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.848
Bo2g144870 Brassica oleracea Bo2g144870 I 0.838
Bra033019 Brassica rapa Bra033019 I 0.838
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.838
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.838
mgf016361m Mimulus guttatus mgf016361m I 0.838
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.833
Cla003499 Citrullus lanatus Cla003499 I 0.828
PK18922.1 Cannabis sativa PK18922.1 I 0.825
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.788
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.788
F775_33210 Aegilops tauschii F775_33210 I 0.781
PK29334.1 Cannabis sativa PK29334.1 I 0.781
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.780
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.771
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.769
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.768
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.768
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.765
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.758
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.747
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.747
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.747
AS2 Vitis vinifera VIT_00s0340g00090 I 0.747
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.747
PK21617.1 Cannabis sativa PK21617.1 I 0.739
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.737
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.737
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.737
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.737
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.737
Ca_20200 Cicer arietinum Ca_20200 I 0.737
Cla005851 Citrullus lanatus Cla005851 I 0.737
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.737
mgf014755m Mimulus guttatus mgf014755m I 0.737
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.737
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.737
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.737
MDP0000273432 Malus domestica MDP0000273432 I 0.737
LBD6 Arabidopsis thaliana AT1G65620 D 0.727
Bo2g051420 Brassica oleracea Bo2g051420 I 0.727
Bra039733 Brassica rapa Bra039733 I 0.727
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.727
TCM_024217 Theobroma cacao TCM_024217 I 0.727
29929.m004500 Ricinus communis 29929.m004500 I 0.727
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.727
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.727
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.727
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.727
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.727
MDP0000643326 Malus domestica MDP0000643326 I 0.727
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.727
GLYMA01G32340 Glycine max GLYMA01G32340 N 0.722
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.722
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.717
F775_21760 Aegilops tauschii F775_21760 I 0.717
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.717
OB05G24560 Oryza brachyantha OB05G24560 I 0.717
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.717
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.717
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.717
OS05G0417000 Oryza sativa OS05G0417000 I 0.717
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.717
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.717
PRUPE_ppa012284mg Prunus persica PRUPE_ppa012284mg N 0.717
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.717
Pm018957 Prunus mume Pm018957 N 0.717
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.717
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.717
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.717
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.717
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.717
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.717
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.717
GSMUA_Achr10G20760_001 Musa acuminata GSMUA_Achr10G20760_001 I 0.713
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.707
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.707
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.707
TCM_000560 Theobroma cacao TCM_000560 I 0.707
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.707
29814.m000742 Ricinus communis 29814.m000742 N 0.707
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.707
Ciclev10032862m.g Citrus clementina Ciclev10032862m.g N 0.707
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.707
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.707
Gorai.013G016900 Gossypium raimondii Gorai.013G016900 N 0.707
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.707
orange1.1g036565m.g Citrus sinensis orange1.1g036565m.g N 0.707
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.707