CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Aquca_011_00559
(
Aquilegia coerulea
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
Aquca_011_00559
T246639_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.919
0.919
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.727
0.727
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aquca_011_00559.1
LOB
10
108
PCAACKFLRRKCMLGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARMKDPVYGCVGAISFLQREVHRLEKELEAANA
Aquca_011_00559.2
LOB
10
108
PCAACKFLRRKCMLGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARMKDPVYGCVGAISFLQREVHRLEKELEAANA
Links
Other
LOB
family TFs
Other
Aquilegia coerulea
TFs
193 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0011s0490
Salix purpurea
SapurV1A.0011s0490
I
0.949
GLYMA05G02530
Glycine max
GLYMA05G02530
I
0.929
GLYMA17G09380
Glycine max
GLYMA17G09380
I
0.929
POPTR_0015s09370
Populus trichocarpa
POPTR_0015s09370
I
0.929
TCM_012190
Theobroma cacao
TCM_012190
I
0.929
LOB
Vitis vinifera
VIT_17s0000g09010
I
0.929
Cla019510
Citrullus lanatus
Cla019510
I
0.929
30147.m013890
Ricinus communis
30147.m013890
I
0.929
cassava19770.m1
Manihot esculenta
cassava19770.m1
I
0.929
cassava33952.m1
Manihot esculenta
cassava33952.m1
I
0.929
Cucsa.196600
Cucumis sativus
Cucsa.196600
I
0.929
Aquca_061_00084
Aquilegia coerulea
Aquca_061_00084
I
0.929
Lus10027676.g
Linum usitatissimum
Lus10027676.g
I
0.929
Lus10039940.g
Linum usitatissimum
Lus10039940.g
I
0.929
MDP0000130659
Malus domestica
MDP0000130659
I
0.929
MDP0000254288
Malus domestica
MDP0000254288
I
0.929
LOB
Arabidopsis thaliana
AT5G63090
D
0.919
Bo3g104760
Brassica oleracea
Bo3g104760
I
0.919
Bra038606
Brassica rapa
Bra038606
I
0.919
MTR_4g105170
Medicago truncatula
MTR_4g105170
I
0.919
POPTR_0012s08540
Populus trichocarpa
POPTR_0012s08540
I
0.919
PRUPE_ppa023059mg
Prunus persica
PRUPE_ppa023059mg
I
0.919
LOB
Arabidopsis lyrata
scaffold_802995.1
I
0.919
Ca_08824
Cicer arietinum
Ca_08824
I
0.919
Pm024312
Prunus mume
Pm024312
I
0.919
Bostr.0568s0498
Boechera stricta
Bostr.0568s0498
I
0.919
Cagra.5118s0045
Capsella grandiflora
Cagra.5118s0045
I
0.919
Thhalv10004979m.g
Eutrema salsugineum
Thhalv10004979m.g
I
0.919
Bo9g017470
Brassica oleracea
Bo9g017470
I
0.909
GLYMA06G18861
Glycine max
GLYMA06G18861
I
0.909
MTR_3g077240
Medicago truncatula
MTR_3g077240
I
0.909
Carubv10028397m.g
Capsella rubella
Carubv10028397m.g
I
0.909
Eucgr.K02809
Eucalyptus grandis
Eucgr.K02809
I
0.909
evm.TU.supercontig_110.17
Carica papaya
evm.TU.supercontig_110.17
I
0.909
gene31797-v1.0-hybrid
Fragaria vesca
gene31797-v1.0-hybrid
I
0.909
chr1.CM0171.410.nc
Lotus japonicus
chr1.CM0171.410.nc
I
0.909
GLYMA04G36080
Glycine max
GLYMA04G36080
I
0.899
PGSC0003DMG400018112
Solanum tuberosum
PGSC0003DMG400018112
I
0.899
POPTR_0001s35280
Populus trichocarpa
POPTR_0001s35280
I
0.899
PRUPE_ppa018381mg
Prunus persica
PRUPE_ppa018381mg
I
0.899
Ca_07463
Cicer arietinum
Ca_07463
I
0.899
Pm015649
Prunus mume
Pm015649
I
0.899
SapurV1A.1247s0030
Salix purpurea
SapurV1A.1247s0030
I
0.899
SapurV1A.1328s0080
Salix purpurea
SapurV1A.1328s0080
I
0.899
PK21510.1
Cannabis sativa
PK21510.1
I
0.899
PK26472.1
Cannabis sativa
PK26472.1
I
0.899
AC233943.1_FG002
Zea mays
AC233943.1_FG002
I
0.889
Bra035860
Brassica rapa
Bra035860
I
0.889
LPERR01G04140
Leersia perrieri
LPERR01G04140
I
0.889
OB01G14220
Oryza brachyantha
OB01G14220
I
0.889
OMERI01G04420
Oryza meridionalis
OMERI01G04420
I
0.889
Sb03g004590
Sorghum bicolor
Sb03g004590
I
0.889
Si002632m.g
Setaria italica
Si002632m.g
I
0.889
LBD25
Vitis vinifera
VIT_14s0066g00680
I
0.889
29917.m001993
Ricinus communis
29917.m001993
I
0.889
cassava12464.valid.m1
Manihot esculenta
cassava12464.valid.m1
I
0.889
Ciclev10022371m.g
Citrus clementina
Ciclev10022371m.g
I
0.889
orange1.1g036845m.g
Citrus sinensis
orange1.1g036845m.g
I
0.889
Pavir.Eb00458
Panicum virgatum
Pavir.Eb00458
I
0.889
Pavir.J38993
Panicum virgatum
Pavir.J38993
I
0.889
MTR_7g033800
Medicago truncatula
MTR_7g033800
I
0.879
OBART01G04470
Oryza barthii
OBART01G04470
I
0.879
OGLUM01G04900
Oryza glumaepatula
OGLUM01G04900
I
0.879
ONIVA01G04930
Oryza nivara
ONIVA01G04930
I
0.879
ORGLA01G0040900
Oryza glaberrima
ORGLA01G0040900
I
0.879
ORUFI01G04670
Oryza rufipogon
ORUFI01G04670
I
0.879
OS01G0169400
Oryza sativa
OS01G0169400
I
0.879
Solyc03g112430.1
Solanum lycopersicum
Solyc03g112430.1
I
0.879
TCM_016952
Theobroma cacao
TCM_016952
I
0.879
mgf024603m
Mimulus guttatus
mgf024603m
I
0.879
Eucgr.I01750
Eucalyptus grandis
Eucgr.I01750
I
0.879
MDP0000848210
Malus domestica
MDP0000848210
I
0.879
BRADI2G04270
Brachypodium distachyon
BRADI2G04270
I
0.869
F775_25656
Aegilops tauschii
F775_25656
I
0.869
GLYMA16G07770
Glycine max
GLYMA16G07770
I
0.869
GLYMA19G12650
Glycine max
GLYMA19G12650
I
0.869
PGSC0003DMG400012629
Solanum tuberosum
PGSC0003DMG400012629
I
0.869
Ca_24372
Cicer arietinum
Ca_24372
I
0.869
Cla010600
Citrullus lanatus
Cla010600
I
0.869
Cucsa.011300
Cucumis sativus
Cucsa.011300
I
0.869
Eucgr.J02237
Eucalyptus grandis
Eucgr.J02237
I
0.869
gene28478-v1.0-hybrid
Fragaria vesca
gene28478-v1.0-hybrid
I
0.869
PK18922.1
Cannabis sativa
PK18922.1
I
0.860
GLYMA05G08870
Glycine max
GLYMA05G08870
I
0.859
GLYMA19G00390
Glycine max
GLYMA19G00390
I
0.859
Cla017388
Citrullus lanatus
Cla017388
I
0.859
Cucsa.339980
Cucumis sativus
Cucsa.339980
I
0.859
mgf016361m
Mimulus guttatus
mgf016361m
I
0.859
Gorai.012G063800
Gossypium raimondii
Gorai.012G063800
I
0.859
Lus10022264.g
Linum usitatissimum
Lus10022264.g
I
0.859
chr2.LjT30P12.80.nc
Lotus japonicus
chr2.LjT30P12.80.nc
I
0.859
LjSGA_042891.1
Lotus japonicus
LjSGA_042891.1
I
0.859
PGSC0003DMG400027078
Solanum tuberosum
PGSC0003DMG400027078
I
0.848
Solyc02g086480.1
Solanum lycopersicum
Solyc02g086480.1
I
0.848
Solyc06g071660.1
Solanum lycopersicum
Solyc06g071660.1
I
0.848
Ciclev10017006m.g
Citrus clementina
Ciclev10017006m.g
I
0.848
evm.TU.supercontig_108.62
Carica papaya
evm.TU.supercontig_108.62
I
0.848
orange1.1g031572m.g
Citrus sinensis
orange1.1g031572m.g
I
0.848
Cucsa.098680
Cucumis sativus
Cucsa.098680
I
0.838
Gorai.006G033100
Gossypium raimondii
Gorai.006G033100
I
0.838
MTR_6g005070
Medicago truncatula
MTR_6g005070
I
0.828
Gorai.007G075700
Gossypium raimondii
Gorai.007G075700
I
0.828
PGSC0003DMG400006914
Solanum tuberosum
PGSC0003DMG400006914
I
0.818
Solyc02g067800.2
Solanum lycopersicum
Solyc02g067800.2
I
0.818
Cla003499
Citrullus lanatus
Cla003499
I
0.818
LBD25
Arabidopsis thaliana
AT3G27650
I
0.808
Bo9g008330
Brassica oleracea
Bo9g008330
I
0.808
Bra039072
Brassica rapa
Bra039072
I
0.808
MTR_6g005080
Medicago truncatula
MTR_6g005080
I
0.808
cassava3724.m1
Manihot esculenta
cassava3724.m1
I
0.808
Cagra.5575s0004
Capsella grandiflora
Cagra.5575s0004
I
0.808
Carubv10018238m.g
Capsella rubella
Carubv10018238m.g
I
0.808
Thhalv10005120m.g
Eutrema salsugineum
Thhalv10005120m.g
I
0.808
GLYMA16G09720
Glycine max
GLYMA16G09720
I
0.805
LBD25
Arabidopsis lyrata
fgenesh2_kg.5__545__AT3G27650.1
I
0.798
SELMODRAFT_59324
Selaginella moellendorffii
SELMODRAFT_59324
I
0.798
SELMODRAFT_68988
Selaginella moellendorffii
SELMODRAFT_68988
I
0.798
mgf003146m
Mimulus guttatus
mgf003146m
I
0.798
Bostr.0556s0446
Boechera stricta
Bostr.0556s0446
I
0.798
Bo7g085860
Brassica oleracea
Bo7g085860
I
0.788
Bra025294
Brassica rapa
Bra025294
I
0.788
LjSGA_017893.1
Lotus japonicus
LjSGA_017893.1
I
0.788
gw1.170.36.1
Physcomitrella patens
gw1.170.36.1
I
0.778
gw1.170.40.1
Physcomitrella patens
gw1.170.40.1
I
0.778
gw1.71.84.1
Physcomitrella patens
gw1.71.84.1
I
0.768
Bo2g144870
Brassica oleracea
Bo2g144870
I
0.758
Bra033019
Brassica rapa
Bra033019
I
0.758
gw1.12.172.1
Physcomitrella patens
gw1.12.172.1
I
0.758
AMTR_s00066p00120340
Amborella trichopoda
AMTR_s00066p00120340
I
0.747
OLONG_009404
Oryza longistaminata
OLONG_009404
I
0.747
PGSC0003DMG400000974
Solanum tuberosum
PGSC0003DMG400000974
I
0.747
Solyc03g063140.2
Solanum lycopersicum
Solyc03g063140.2
I
0.747
TRIUR3_10339
Triticum urartu
TRIUR3_10339
I
0.747
GLYMA13G26020
Glycine max
GLYMA13G26020
I
0.737
GLYMA15G36310
Glycine max
GLYMA15G36310
I
0.737
MTR_8g040900
Medicago truncatula
MTR_8g040900
I
0.737
PRUPE_ppa027059mg
Prunus persica
PRUPE_ppa027059mg
I
0.737
Solyc11g008830.1
Solanum lycopersicum
Solyc11g008830.1
I
0.737
AS2
Vitis vinifera
VIT_00s0340g00090
I
0.737
Ca_20200
Cicer arietinum
Ca_20200
I
0.737
Cla005851
Citrullus lanatus
Cla005851
I
0.737
Cucsa.178830
Cucumis sativus
Cucsa.178830
I
0.737
mgf014755m
Mimulus guttatus
mgf014755m
I
0.737
Aquca_058_00006
Aquilegia coerulea
Aquca_058_00006
I
0.737
Ciclev10017910m.g
Citrus clementina
Ciclev10017910m.g
I
0.737
Eucgr.C02148
Eucalyptus grandis
Eucgr.C02148
I
0.737
gene21541-v1.0-hybrid
Fragaria vesca
gene21541-v1.0-hybrid
I
0.737
MDP0000273432
Malus domestica
MDP0000273432
I
0.737
orange1.1g027472m.g
Citrus sinensis
orange1.1g027472m.g
I
0.737
LBD6
Arabidopsis thaliana
AT1G65620
D
0.727
Bo2g051420
Brassica oleracea
Bo2g051420
I
0.727
Bra039733
Brassica rapa
Bra039733
I
0.727
AS2
Arabidopsis lyrata
fgenesh2_kg.2__796__AT1G65620.2
I
0.727
TCM_024217
Theobroma cacao
TCM_024217
I
0.727
29929.m004500
Ricinus communis
29929.m004500
I
0.727
cassava1141.valid.m1
Manihot esculenta
cassava1141.valid.m1
I
0.727
cassava32690.m1
Manihot esculenta
cassava32690.m1
I
0.727
Aquca_007_00083
Aquilegia coerulea
Aquca_007_00083
I
0.727
Bostr.26959s0351
Boechera stricta
Bostr.26959s0351
I
0.727
Cagra.10809s0001
Capsella grandiflora
Cagra.10809s0001
I
0.727
Carubv10020974m.g
Capsella rubella
Carubv10020974m.g
I
0.727
evm.TU.supercontig_39.110
Carica papaya
evm.TU.supercontig_39.110
I
0.727
MDP0000643326
Malus domestica
MDP0000643326
I
0.727
Thhalv10019572m.g
Eutrema salsugineum
Thhalv10019572m.g
I
0.727
POPTR_0008s07930
Populus trichocarpa
POPTR_0008s07930
I
0.717
POPTR_0010s18460
Populus trichocarpa
POPTR_0010s18460
I
0.717
TCM_000560
Theobroma cacao
TCM_000560
I
0.717
Bostr.0568s0111
Boechera stricta
Bostr.0568s0111
I
0.717
Cagra.20099s0001
Capsella grandiflora
Cagra.20099s0001
I
0.717
Carubv10026811m.g
Capsella rubella
Carubv10026811m.g
I
0.717
Gorai.007G210500
Gossypium raimondii
Gorai.007G210500
I
0.717
Gorai.007G350300
Gossypium raimondii
Gorai.007G350300
I
0.717
Gorai.011G104600
Gossypium raimondii
Gorai.011G104600
I
0.717
Lus10005313.g
Linum usitatissimum
Lus10005313.g
I
0.717
SapurV1A.0093s0490
Salix purpurea
SapurV1A.0093s0490
I
0.717
SapurV1A.0164s0090
Salix purpurea
SapurV1A.0164s0090
I
0.717
LBD36
Arabidopsis thaliana
AT5G66870
I
0.707
ASL1
Arabidopsis lyrata
fgenesh2_kg.8__2729__AT5G66870.1
I
0.707
LPERR03G21590
Leersia perrieri
LPERR03G21590
I
0.707
POPTR_0007s11460
Populus trichocarpa
POPTR_0007s11460
I
0.707
PRUPE_ppa026393mg
Prunus persica
PRUPE_ppa026393mg
I
0.707
Si036905m.g
Setaria italica
Si036905m.g
I
0.707
Pm026450
Prunus mume
Pm026450
I
0.707
Cucsa.250570
Cucumis sativus
Cucsa.250570
I
0.707
Ciclev10027275m.g
Citrus clementina
Ciclev10027275m.g
I
0.707
gene24088-v1.0-hybrid
Fragaria vesca
gene24088-v1.0-hybrid
I
0.707
Lus10013610.g
Linum usitatissimum
Lus10013610.g
I
0.707
orange1.1g039589m.g
Citrus sinensis
orange1.1g039589m.g
I
0.707
Pavir.J16692
Panicum virgatum
Pavir.J16692
I
0.707
SapurV1A.0428s0090
Salix purpurea
SapurV1A.0428s0090
I
0.707
SapurV1A.0641s0140
Salix purpurea
SapurV1A.0641s0140
I
0.707
SapurV1A.0811s0020
Salix purpurea
SapurV1A.0811s0020
I
0.707