MTR_4g105170 (Medicago truncatula)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 MTR_4g105170 T245454_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.960 0.960
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.768 0.768
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH31799 LOB 11 109

Links

Other LOB family TFs
Other Medicago truncatula TFs

278 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_08824 Cicer arietinum Ca_08824 I 1.000
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.990
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.990
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.990
TCM_012190 Theobroma cacao TCM_012190 I 0.990
Cla019510 Citrullus lanatus Cla019510 I 0.990
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.990
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.990
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.990
MDP0000130659 Malus domestica MDP0000130659 I 0.990
MDP0000254288 Malus domestica MDP0000254288 I 0.990
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.980
LOB Vitis vinifera VIT_17s0000g09010 I 0.980
Pm024312 Prunus mume Pm024312 I 0.980
30147.m013890 Ricinus communis 30147.m013890 I 0.980
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.970
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.970
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.970
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.970
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.970
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.970
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.970
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.970
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.970
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.970
LOB Arabidopsis thaliana AT5G63090 D 0.960
Bo3g104760 Brassica oleracea Bo3g104760 I 0.960
Bra038606 Brassica rapa Bra038606 I 0.960
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.960
LOB Arabidopsis lyrata scaffold_802995.1 I 0.960
Ca_07463 Cicer arietinum Ca_07463 I 0.960
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.960
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.960
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.960
Bo9g017470 Brassica oleracea Bo9g017470 I 0.949
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.949
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.949
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.949
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.939
PK21510.1 Cannabis sativa PK21510.1 I 0.939
Bra035860 Brassica rapa Bra035860 I 0.929
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.929
mgf024603m Mimulus guttatus mgf024603m I 0.929
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.929
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.929
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.919
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.909
F775_25656 Aegilops tauschii F775_25656 I 0.909
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.909
OB01G14220 Oryza brachyantha OB01G14220 I 0.909
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.909
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.909
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.909
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.909
Si002632m.g Setaria italica Si002632m.g I 0.909
Pm015649 Prunus mume Pm015649 I 0.909
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.909
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.909
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.909
PK26472.1 Cannabis sativa PK26472.1 I 0.909
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.899
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.899
OBART01G04470 Oryza barthii OBART01G04470 I 0.899
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.899
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.899
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.899
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.899
OS01G0169400 Oryza sativa OS01G0169400 I 0.899
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.899
29917.m001993 Ricinus communis 29917.m001993 I 0.899
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.899
mgf016361m Mimulus guttatus mgf016361m I 0.899
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.889
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.889
TCM_016952 Theobroma cacao TCM_016952 I 0.889
Ca_24372 Cicer arietinum Ca_24372 I 0.889
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.889
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.889
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.889
MDP0000848210 Malus domestica MDP0000848210 I 0.889
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.879
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.879
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.879
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.879
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.879
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.879
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.879
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.879
Cla010600 Citrullus lanatus Cla010600 I 0.869
Cla017388 Citrullus lanatus Cla017388 I 0.869
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.869
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.869
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.869
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.869
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.869
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.869
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.859
Cla003499 Citrullus lanatus Cla003499 I 0.859
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.859
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.859
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.848
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.838
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.838
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.838
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.828
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.828
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.828
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.818
mgf003146m Mimulus guttatus mgf003146m I 0.818
LBD25 Arabidopsis thaliana AT3G27650 I 0.798
Bo7g085860 Brassica oleracea Bo7g085860 I 0.798
Bra025294 Brassica rapa Bra025294 I 0.798
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.798
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.798
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.798
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.798
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.798
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.798
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.798
Bo9g008330 Brassica oleracea Bo9g008330 I 0.788
Bra039072 Brassica rapa Bra039072 I 0.788
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.788
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.788
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.788
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.780
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.778
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.778
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.778
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.778
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.778
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.778
AS2 Vitis vinifera VIT_00s0340g00090 I 0.778
Ca_20200 Cicer arietinum Ca_20200 I 0.778
Cla005851 Citrullus lanatus Cla005851 I 0.778
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.778
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.778
mgf014755m Mimulus guttatus mgf014755m I 0.778
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.778
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.778
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.778
MDP0000273432 Malus domestica MDP0000273432 I 0.778
LBD6 Arabidopsis thaliana AT1G65620 D 0.768
Bo2g051420 Brassica oleracea Bo2g051420 I 0.768
Bra039733 Brassica rapa Bra039733 I 0.768
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.768
TCM_024217 Theobroma cacao TCM_024217 I 0.768
29929.m004500 Ricinus communis 29929.m004500 I 0.768
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.768
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.768
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.768
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.768
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.768
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.768
MDP0000643326 Malus domestica MDP0000643326 I 0.768
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.768
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.768
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.759
Bo2g144870 Brassica oleracea Bo2g144870 I 0.758
Bra033019 Brassica rapa Bra033019 I 0.758
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.758
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.758
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.758
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.758
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.758
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.758
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.747
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.747
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.737
F775_21760 Aegilops tauschii F775_21760 I 0.737
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.737
OB05G24560 Oryza brachyantha OB05G24560 I 0.737
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.737
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.737
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.737
OS05G0417000 Oryza sativa OS05G0417000 I 0.737
TCM_000560 Theobroma cacao TCM_000560 I 0.737
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.737
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.737
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.737
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.737
LBD6 Oryza indica BGIOSGA004955 I 0.727
Bo2g167820 Brassica oleracea Bo2g167820 I 0.727
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.727
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.727
F775_20715 Aegilops tauschii F775_20715 I 0.727
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.727
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.727
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.727
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.727
OB01G48740 Oryza brachyantha OB01G48740 I 0.727
OBART01G39990 Oryza barthii OBART01G39990 I 0.727
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.727
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.727
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.727
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.727
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.727
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.727
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.727
LBD6 Oryza sativa OS01G0889400 I 0.727
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.727
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.727
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.727
Si002599m.g Setaria italica Si002599m.g I 0.727
Si024114m.g Setaria italica Si024114m.g I 0.727
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.727
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.727
Pm026450 Prunus mume Pm026450 I 0.727
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.727
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.727
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.727
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.727
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.727
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.727
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.727
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.727
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.727
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.727
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.727
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.727
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.727
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.727
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.717
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.717
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.717
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.717
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.717
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.717
Si036905m.g Setaria italica Si036905m.g I 0.717
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.717
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.717
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.717
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.717
29676.m001633 Ricinus communis 29676.m001633 I 0.717
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.717
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.717
mgf004296m Mimulus guttatus mgf004296m I 0.717
Lus10005313.g Linum usitatissimum Lus10005313.g I 0.717
MDP0000562305 Malus domestica MDP0000562305 I 0.717
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.717
LBD36 Arabidopsis thaliana AT5G66870 I 0.707
BGIOSGA013119 Oryza indica BGIOSGA013119 I 0.707
Bo3g024350 Brassica oleracea Bo3g024350 I 0.707
Bo7g064360 Brassica oleracea Bo7g064360 I 0.707
Bra012112 Brassica rapa Bra012112 I 0.707
Bra022780 Brassica rapa Bra022780 I 0.707
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.707
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.707
GLYMA11G06210 Glycine max GLYMA11G06210 I 0.707
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707
GRMZM2G362627 Zea mays GRMZM2G362627 I 0.707
MTR_5g017950 Medicago truncatula MTR_5g017950 I 0.707
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.707
OGLUM03G26820 Oryza glumaepatula OGLUM03G26820 I 0.707
ONIVA11G15310 Oryza nivara ONIVA11G15310 I 0.707
ORGLA03G0240600 Oryza glaberrima ORGLA03G0240600 I 0.707
ORUFI03G26840 Oryza rufipogon ORUFI03G26840 I 0.707
OS03G0612400 Oryza sativa OS03G0612400 I 0.707
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.707
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.707
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
Sb01g014650 Sorghum bicolor Sb01g014650 I 0.707
Si037583m.g Setaria italica Si037583m.g I 0.707
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.707
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.707
Traes_4BS_C1F4F41E9 Triticum aestivum Traes_4BS_C1F4F41E9 I 0.707
Traes_4DS_72ABC3EE5 Triticum aestivum Traes_4DS_72ABC3EE5 I 0.707
Ca_11161 Cicer arietinum Ca_11161 I 0.707
Cla020438 Citrullus lanatus Cla020438 I 0.707
cassava16840.m1 Manihot esculenta cassava16840.m1 I 0.707
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.707
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.707
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.707
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.707
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.707
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.707
Pavir.J09541 Panicum virgatum Pavir.J09541 I 0.707
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.707
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.707