Cla017388 (Citrullus lanatus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cla017388 T246350_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.869 0.869
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla017388 LOB 10 108

Links

Other LOB family TFs
Other Citrullus lanatus TFs

251 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.339980 Cucumis sativus Cucsa.339980 I 1.000
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.970
29917.m001993 Ricinus communis 29917.m001993 I 0.960
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.960
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.949
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.949
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.949
Cla010600 Citrullus lanatus Cla010600 I 0.949
Pm015649 Prunus mume Pm015649 I 0.949
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.949
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.949
PK26472.1 Cannabis sativa PK26472.1 I 0.949
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.939
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.939
Ca_24372 Cicer arietinum Ca_24372 I 0.939
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.939
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.939
MDP0000848210 Malus domestica MDP0000848210 I 0.939
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.929
TCM_016952 Theobroma cacao TCM_016952 I 0.929
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.929
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.929
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.919
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.919
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.919
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.909
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.909
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.909
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.909
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.909
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.899
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.899
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.899
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.899
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.889
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.889
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.889
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.879
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.879
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.879
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.879
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.879
OB01G14220 Oryza brachyantha OB01G14220 I 0.879
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.879
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.879
Si002632m.g Setaria italica Si002632m.g I 0.879
TCM_012190 Theobroma cacao TCM_012190 I 0.879
LOB Vitis vinifera VIT_17s0000g09010 I 0.879
Cla019510 Citrullus lanatus Cla019510 I 0.879
30147.m013890 Ricinus communis 30147.m013890 I 0.879
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.879
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.879
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.879
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.879
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.879
MDP0000130659 Malus domestica MDP0000130659 I 0.879
MDP0000254288 Malus domestica MDP0000254288 I 0.879
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.879
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.879
AMTR_s00083p00067130 Amborella trichopoda AMTR_s00083p00067130 I 0.871
LOB Arabidopsis thaliana AT5G63090 D 0.869
Bo3g104760 Brassica oleracea Bo3g104760 I 0.869
Bra038606 Brassica rapa Bra038606 I 0.869
F775_25656 Aegilops tauschii F775_25656 I 0.869
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.869
OBART01G04470 Oryza barthii OBART01G04470 I 0.869
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.869
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.869
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.869
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.869
OS01G0169400 Oryza sativa OS01G0169400 I 0.869
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.869
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.869
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.869
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.869
LOB Arabidopsis lyrata scaffold_802995.1 I 0.869
Ca_08824 Cicer arietinum Ca_08824 I 0.869
Pm024312 Prunus mume Pm024312 I 0.869
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.869
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.869
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.869
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.869
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.869
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.869
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.869
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.869
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.869
LBD25 Arabidopsis thaliana AT3G27650 I 0.859
Bo9g017470 Brassica oleracea Bo9g017470 I 0.859
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.859
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.859
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.859
mgf024603m Mimulus guttatus mgf024603m I 0.859
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.859
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.859
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.859
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.859
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.859
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.852
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.852
Bo7g085860 Brassica oleracea Bo7g085860 I 0.848
Bra025294 Brassica rapa Bra025294 I 0.848
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.848
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.848
Ca_07463 Cicer arietinum Ca_07463 I 0.848
Cla003499 Citrullus lanatus Cla003499 I 0.848
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.848
mgf003146m Mimulus guttatus mgf003146m I 0.848
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.848
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.848
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.848
PK21510.1 Cannabis sativa PK21510.1 I 0.848
PK18922.1 Cannabis sativa PK18922.1 I 0.842
Bo9g008330 Brassica oleracea Bo9g008330 I 0.838
Bra035860 Brassica rapa Bra035860 I 0.838
Bra039072 Brassica rapa Bra039072 I 0.838
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.838
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.838
Bo2g144870 Brassica oleracea Bo2g144870 I 0.828
Bra033019 Brassica rapa Bra033019 I 0.828
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.818
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.818
mgf016361m Mimulus guttatus mgf016361m I 0.818
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.798
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.798
F775_33210 Aegilops tauschii F775_33210 I 0.795
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.785
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.781
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.778
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.778
Lus10001139.g Linum usitatissimum Lus10001139.g I 0.776
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.768
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.768
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.768
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.758
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.758
Cla005851 Citrullus lanatus Cla005851 I 0.758
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.758
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.758
mgf014755m Mimulus guttatus mgf014755m I 0.758
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.756
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.753
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.747
AS2 Vitis vinifera VIT_00s0340g00090 I 0.747
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.747
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.747
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.747
MDP0000273432 Malus domestica MDP0000273432 I 0.747
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.745
PK21617.1 Cannabis sativa PK21617.1 I 0.739
LBD6 Arabidopsis thaliana AT1G65620 D 0.737
Bo2g051420 Brassica oleracea Bo2g051420 I 0.737
Bra039733 Brassica rapa Bra039733 I 0.737
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.737
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.737
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.737
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.737
TCM_024217 Theobroma cacao TCM_024217 I 0.737
Ca_20200 Cicer arietinum Ca_20200 I 0.737
29929.m004500 Ricinus communis 29929.m004500 I 0.737
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.737
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.737
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.737
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.737
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.737
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.737
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.737
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.737
MDP0000643326 Malus domestica MDP0000643326 I 0.737
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.737
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.737
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.734
PK29334.1 Cannabis sativa PK29334.1 I 0.734
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.727
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.727
TCM_000560 Theobroma cacao TCM_000560 I 0.727
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.727
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.727
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.727
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.727
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.727
GLYMA01G32340 Glycine max GLYMA01G32340 N 0.722
LBD6 Oryza indica BGIOSGA004955 I 0.717
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.717
Bo2g167820 Brassica oleracea Bo2g167820 I 0.717
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.717
F775_20715 Aegilops tauschii F775_20715 I 0.717
F775_21760 Aegilops tauschii F775_21760 I 0.717
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.717
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.717
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.717
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.717
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.717
OB01G48740 Oryza brachyantha OB01G48740 I 0.717
OB05G24560 Oryza brachyantha OB05G24560 I 0.717
OBART01G39990 Oryza barthii OBART01G39990 I 0.717
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.717
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.717
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.717
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.717
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.717
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.717
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.717
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.717
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.717
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.717
LBD6 Oryza sativa OS01G0889400 I 0.717
OS05G0417000 Oryza sativa OS05G0417000 I 0.717
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.717
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.717
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.717
Si002599m.g Setaria italica Si002599m.g I 0.717
Si024114m.g Setaria italica Si024114m.g I 0.717
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.717
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.717
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.717
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.717
Pm026450 Prunus mume Pm026450 I 0.717
29676.m001633 Ricinus communis 29676.m001633 I 0.717
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.717
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.717
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.717
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.717
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.717
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.717
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.717
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.717
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.717
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.717
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.717
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.717
Bo7g064360 Brassica oleracea Bo7g064360 I 0.707
Bra012112 Brassica rapa Bra012112 I 0.707
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.707
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.707
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.707
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.707
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.707
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.707
Ca_11161 Cicer arietinum Ca_11161 I 0.707
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.707
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.707
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.707
mgf004296m Mimulus guttatus mgf004296m I 0.707
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.707
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.707
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.707
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.707
PK17019.1 Cannabis sativa PK17019.1 I 0.706
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.702
GSMUA_Achr10G20760_001 Musa acuminata GSMUA_Achr10G20760_001 I 0.700