gene31797-v1.0-hybrid (Fragaria vesca)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 gene31797-v1.0-hybrid T246938_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.949 0.949
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna31797.1-v1.0-hybrid LOB 11 109

Links

Other LOB family TFs
Other Fragaria vesca TFs

268 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.980
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.980
TCM_012190 Theobroma cacao TCM_012190 I 0.980
Cla019510 Citrullus lanatus Cla019510 I 0.980
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.980
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.980
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.980
MDP0000130659 Malus domestica MDP0000130659 I 0.980
MDP0000254288 Malus domestica MDP0000254288 I 0.980
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.970
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.970
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.970
LOB Vitis vinifera VIT_17s0000g09010 I 0.970
Ca_08824 Cicer arietinum Ca_08824 I 0.970
Pm024312 Prunus mume Pm024312 I 0.970
30147.m013890 Ricinus communis 30147.m013890 I 0.970
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.960
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.960
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.960
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.960
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.960
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.960
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.960
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.960
LOB Arabidopsis thaliana AT5G63090 D 0.949
Bo3g104760 Brassica oleracea Bo3g104760 I 0.949
Bra038606 Brassica rapa Bra038606 I 0.949
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.949
LOB Arabidopsis lyrata scaffold_802995.1 I 0.949
Ca_07463 Cicer arietinum Ca_07463 I 0.949
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.949
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.949
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.949
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.949
PK21510.1 Cannabis sativa PK21510.1 I 0.949
Bo9g017470 Brassica oleracea Bo9g017470 I 0.939
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.939
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.939
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.939
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.939
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.939
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.929
Bra035860 Brassica rapa Bra035860 I 0.919
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.919
mgf024603m Mimulus guttatus mgf024603m I 0.919
mgf016361m Mimulus guttatus mgf016361m I 0.909
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.909
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.899
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.899
OB01G14220 Oryza brachyantha OB01G14220 I 0.899
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.899
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.899
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.899
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.899
Si002632m.g Setaria italica Si002632m.g I 0.899
Pm015649 Prunus mume Pm015649 I 0.899
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.899
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.899
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.899
PK26472.1 Cannabis sativa PK26472.1 I 0.899
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.889
OBART01G04470 Oryza barthii OBART01G04470 I 0.889
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.889
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.889
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.889
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.889
OS01G0169400 Oryza sativa OS01G0169400 I 0.889
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.889
29917.m001993 Ricinus communis 29917.m001993 I 0.889
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.889
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.879
F775_25656 Aegilops tauschii F775_25656 I 0.879
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.879
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.879
TCM_016952 Theobroma cacao TCM_016952 I 0.879
Ca_24372 Cicer arietinum Ca_24372 I 0.879
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.879
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.879
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.879
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.879
MDP0000848210 Malus domestica MDP0000848210 I 0.879
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.869
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.869
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.869
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.869
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.869
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.869
Cla003499 Citrullus lanatus Cla003499 I 0.869
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.869
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.869
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.869
PK18922.1 Cannabis sativa PK18922.1 I 0.860
Cla010600 Citrullus lanatus Cla010600 I 0.859
Cla017388 Citrullus lanatus Cla017388 I 0.859
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.859
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.859
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.859
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.859
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.859
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.852
mgf003146m Mimulus guttatus mgf003146m I 0.848
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.848
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.848
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.847
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.838
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.828
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.828
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.828
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.818
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.818
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.818
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.808
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.798
F775_33210 Aegilops tauschii F775_33210 I 0.795
LBD25 Arabidopsis thaliana AT3G27650 I 0.788
Bo7g085860 Brassica oleracea Bo7g085860 I 0.788
Bra025294 Brassica rapa Bra025294 I 0.788
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.788
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.788
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.788
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.788
Ca_20200 Cicer arietinum Ca_20200 I 0.788
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.788
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.788
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.788
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.788
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.788
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.788
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.778
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.778
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.778
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.769
Bo9g008330 Brassica oleracea Bo9g008330 I 0.768
Bra039072 Brassica rapa Bra039072 I 0.768
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.768
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.768
AS2 Vitis vinifera VIT_00s0340g00090 I 0.768
Cla005851 Citrullus lanatus Cla005851 I 0.768
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.768
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.768
mgf014755m Mimulus guttatus mgf014755m I 0.768
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.768
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.768
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.768
MDP0000273432 Malus domestica MDP0000273432 I 0.768
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.760
LBD6 Arabidopsis thaliana AT1G65620 D 0.758
Bo2g051420 Brassica oleracea Bo2g051420 I 0.758
Bra039733 Brassica rapa Bra039733 I 0.758
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.758
TCM_024217 Theobroma cacao TCM_024217 I 0.758
29929.m004500 Ricinus communis 29929.m004500 I 0.758
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.758
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.758
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.758
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.758
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.758
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.758
MDP0000643326 Malus domestica MDP0000643326 I 0.758
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.758
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.758
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.756
Bo2g144870 Brassica oleracea Bo2g144870 I 0.747
Bra033019 Brassica rapa Bra033019 I 0.747
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.747
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.747
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.747
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.747
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.747
Bo2g167820 Brassica oleracea Bo2g167820 I 0.737
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.737
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.737
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.734
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.727
F775_21760 Aegilops tauschii F775_21760 I 0.727
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.727
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.727
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.727
OB05G24560 Oryza brachyantha OB05G24560 I 0.727
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.727
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.727
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.727
OS05G0417000 Oryza sativa OS05G0417000 I 0.727
TCM_000560 Theobroma cacao TCM_000560 I 0.727
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.727
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.727
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.727
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.727
GSMUA_Achr10G20760_001 Musa acuminata GSMUA_Achr10G20760_001 I 0.725
gw1.7.209.1 Physcomitrella patens gw1.7.209.1 I 0.724
LBD6 Oryza indica BGIOSGA004955 I 0.717
BGIOSGA013119 Oryza indica BGIOSGA013119 I 0.717
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.717
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.717
F775_20715 Aegilops tauschii F775_20715 I 0.717
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.717
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.717
GRMZM2G362627 Zea mays GRMZM2G362627 I 0.717
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.717
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.717
OB01G48740 Oryza brachyantha OB01G48740 I 0.717
OBART01G39990 Oryza barthii OBART01G39990 I 0.717
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.717
OGLUM03G26820 Oryza glumaepatula OGLUM03G26820 I 0.717
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.717
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.717
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.717
ONIVA11G15310 Oryza nivara ONIVA11G15310 I 0.717
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.717
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.717
ORGLA03G0240600 Oryza glaberrima ORGLA03G0240600 I 0.717
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.717
ORUFI03G26840 Oryza rufipogon ORUFI03G26840 I 0.717
LBD6 Oryza sativa OS01G0889400 I 0.717
OS03G0612400 Oryza sativa OS03G0612400 I 0.717
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.717
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.717
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.717
Si002599m.g Setaria italica Si002599m.g I 0.717
Si024114m.g Setaria italica Si024114m.g I 0.717
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.717
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.717
Pm026450 Prunus mume Pm026450 I 0.717
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.717
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.717
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.717
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.717
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.717
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.717
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.717
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.717
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.717
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.717
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.717
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.717
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.717
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.717
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.717
LBD12 Arabidopsis thaliana AT2G30130 I 0.707
Bo4g059700 Brassica oleracea Bo4g059700 I 0.707
Bra018335 Brassica rapa Bra018335 I 0.707
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.707
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.707
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.707
GLYMA18G02780 Glycine max GLYMA18G02780 I 0.707
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.707
OB03G34080 Oryza brachyantha OB03G34080 I 0.707
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.707
PRUPE_ppa012275mg Prunus persica PRUPE_ppa012275mg I 0.707
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.707
Si036905m.g Setaria italica Si036905m.g I 0.707
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.707
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.707
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.707
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.707
Ca_08998 Cicer arietinum Ca_08998 I 0.707
Pm000193 Prunus mume Pm000193 I 0.707
29676.m001633 Ricinus communis 29676.m001633 I 0.707
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.707
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.707
mgf004296m Mimulus guttatus mgf004296m I 0.707
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.707
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I 0.707
Lus10005313.g Linum usitatissimum Lus10005313.g I 0.707
MDP0000265429 Malus domestica MDP0000265429 I 0.707
MDP0000562305 Malus domestica MDP0000562305 I 0.707
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.707
PK29334.1 Cannabis sativa PK29334.1 I 0.703