GLYMA19G00390 (Glycine max)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 GLYMA19G00390 T245252_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.899 0.899
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA19G00390.2 LOB 10 108

Links

Other LOB family TFs
Other Glycine max TFs

183 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA05G08870 Glycine max GLYMA05G08870 I 1.000
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.980
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.970
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.970
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.960
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.960
Ca_24372 Cicer arietinum Ca_24372 I 0.960
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.949
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.949
Pm015649 Prunus mume Pm015649 I 0.949
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.949
PK26472.1 Cannabis sativa PK26472.1 I 0.949
TCM_016952 Theobroma cacao TCM_016952 I 0.939
29917.m001993 Ricinus communis 29917.m001993 I 0.939
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.939
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.939
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.939
MDP0000848210 Malus domestica MDP0000848210 I 0.939
Cla010600 Citrullus lanatus Cla010600 I 0.929
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.929
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.929
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.929
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.919
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.919
Cla017388 Citrullus lanatus Cla017388 I 0.919
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.919
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.919
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.909
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.909
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.909
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.909
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.909
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.909
LOB Arabidopsis thaliana AT5G63090 D 0.899
Bo3g104760 Brassica oleracea Bo3g104760 I 0.899
Bra038606 Brassica rapa Bra038606 I 0.899
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.899
LOB Arabidopsis lyrata scaffold_802995.1 I 0.899
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.899
30147.m013890 Ricinus communis 30147.m013890 I 0.899
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.899
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.899
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.899
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.899
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.899
Bo9g017470 Brassica oleracea Bo9g017470 I 0.889
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.889
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.889
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.889
TCM_012190 Theobroma cacao TCM_012190 I 0.889
LOB Vitis vinifera VIT_17s0000g09010 I 0.889
Cla019510 Citrullus lanatus Cla019510 I 0.889
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.889
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.889
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.889
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.889
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.889
MDP0000130659 Malus domestica MDP0000130659 I 0.889
MDP0000254288 Malus domestica MDP0000254288 I 0.889
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.879
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.879
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.879
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.879
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.879
Ca_08824 Cicer arietinum Ca_08824 I 0.879
Pm024312 Prunus mume Pm024312 I 0.879
mgf024603m Mimulus guttatus mgf024603m I 0.879
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.879
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.879
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.879
LBD25 Arabidopsis thaliana AT3G27650 I 0.869
Bra035860 Brassica rapa Bra035860 I 0.869
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.869
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.869
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.869
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.869
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.869
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.869
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.859
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.859
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.859
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.859
OB01G14220 Oryza brachyantha OB01G14220 I 0.859
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.859
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.859
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.859
Si002632m.g Setaria italica Si002632m.g I 0.859
Ca_07463 Cicer arietinum Ca_07463 I 0.859
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.859
mgf003146m Mimulus guttatus mgf003146m I 0.859
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.859
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.859
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.859
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.859
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.859
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.859
PK21510.1 Cannabis sativa PK21510.1 I 0.859
Bo7g085860 Brassica oleracea Bo7g085860 I 0.848
Bo9g008330 Brassica oleracea Bo9g008330 I 0.848
Bra025294 Brassica rapa Bra025294 I 0.848
Bra039072 Brassica rapa Bra039072 I 0.848
F775_25656 Aegilops tauschii F775_25656 I 0.848
OBART01G04470 Oryza barthii OBART01G04470 I 0.848
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.848
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.848
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.848
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.848
OS01G0169400 Oryza sativa OS01G0169400 I 0.848
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.848
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.848
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.838
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.838
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.838
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.828
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.828
Cla003499 Citrullus lanatus Cla003499 I 0.828
Bo2g144870 Brassica oleracea Bo2g144870 I 0.818
Bra033019 Brassica rapa Bra033019 I 0.818
mgf016361m Mimulus guttatus mgf016361m I 0.818
PK18922.1 Cannabis sativa PK18922.1 I 0.807
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.798
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.798
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.780
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.778
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.778
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.768
GLYMA01G32340 Glycine max GLYMA01G32340 N 0.763
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.758
PK29334.1 Cannabis sativa PK29334.1 I 0.750
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.747
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.747
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.741
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.737
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.737
AS2 Vitis vinifera VIT_00s0340g00090 I 0.737
mgf014755m Mimulus guttatus mgf014755m I 0.737
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.737
MDP0000643326 Malus domestica MDP0000643326 I 0.737
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.727
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.727
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.727
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.727
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.727
Ca_20200 Cicer arietinum Ca_20200 I 0.727
Cla005851 Citrullus lanatus Cla005851 I 0.727
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.727
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.727
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.727
MDP0000273432 Malus domestica MDP0000273432 I 0.727
GSMUA_Achr10G20760_001 Musa acuminata GSMUA_Achr10G20760_001 I 0.725
LBD6 Arabidopsis thaliana AT1G65620 D 0.717
Bo2g051420 Brassica oleracea Bo2g051420 I 0.717
Bra039733 Brassica rapa Bra039733 I 0.717
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.717
TCM_024217 Theobroma cacao TCM_024217 I 0.717
29929.m004500 Ricinus communis 29929.m004500 I 0.717
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.717
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.717
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.717
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.717
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.717
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.717
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.717
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.717
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.707
Bo2g167820 Brassica oleracea Bo2g167820 I 0.707
F775_21760 Aegilops tauschii F775_21760 I 0.707
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.707
OB05G24560 Oryza brachyantha OB05G24560 I 0.707
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.707
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.707
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.707
OS05G0417000 Oryza sativa OS05G0417000 I 0.707
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.707
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.707
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.707
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.707
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.707
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.707
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.707
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.707
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.707
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.707