Bra033019 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra033019 T245079_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.768 0.768
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra033019.1-P LOB 12 110

Links

Other LOB family TFs
Other Brassica rapa TFs

157 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g144870 Brassica oleracea Bo2g144870 I 1.000
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.960
LBD25 Arabidopsis thaliana AT3G27650 I 0.949
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.949
Bra025294 Brassica rapa Bra025294 I 0.939
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.939
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.939
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.939
Bo9g008330 Brassica oleracea Bo9g008330 I 0.919
Bra039072 Brassica rapa Bra039072 I 0.919
Bo7g085860 Brassica oleracea Bo7g085860 I 0.909
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.848
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.848
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.838
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.838
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.838
TCM_016952 Theobroma cacao TCM_016952 I 0.828
Cla017388 Citrullus lanatus Cla017388 I 0.828
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.828
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.828
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.828
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.828
MDP0000848210 Malus domestica MDP0000848210 I 0.828
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.828
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.818
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.818
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.818
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.818
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.818
Cla010600 Citrullus lanatus Cla010600 I 0.818
Pm015649 Prunus mume Pm015649 I 0.818
29917.m001993 Ricinus communis 29917.m001993 I 0.818
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.818
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.818
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.818
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.818
PK26472.1 Cannabis sativa PK26472.1 I 0.818
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.818
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.818
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.808
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.808
Ca_24372 Cicer arietinum Ca_24372 I 0.808
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.798
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.798
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.788
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.788
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.788
PK29334.1 Cannabis sativa PK29334.1 I 0.781
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.778
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.778
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.778
30147.m013890 Ricinus communis 30147.m013890 I 0.778
mgf003146m Mimulus guttatus mgf003146m I 0.778
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.778
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.778
LOB Arabidopsis thaliana AT5G63090 D 0.768
Bo3g104760 Brassica oleracea Bo3g104760 I 0.768
Bra038606 Brassica rapa Bra038606 I 0.768
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.768
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.768
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.768
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.768
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.768
LOB Arabidopsis lyrata scaffold_802995.1 I 0.768
TCM_012190 Theobroma cacao TCM_012190 I 0.768
LOB Vitis vinifera VIT_17s0000g09010 I 0.768
Ca_07463 Cicer arietinum Ca_07463 I 0.768
Cla019510 Citrullus lanatus Cla019510 I 0.768
Pm024312 Prunus mume Pm024312 I 0.768
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.768
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.768
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.768
mgf024603m Mimulus guttatus mgf024603m I 0.768
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.768
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.768
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.768
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.768
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.768
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.768
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.768
MDP0000130659 Malus domestica MDP0000130659 I 0.768
MDP0000254288 Malus domestica MDP0000254288 I 0.768
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.768
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.768
F775_33210 Aegilops tauschii F775_33210 I 0.767
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.759
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.758
Bo9g017470 Brassica oleracea Bo9g017470 I 0.758
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.758
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.758
OB01G14220 Oryza brachyantha OB01G14220 I 0.758
OBART01G04470 Oryza barthii OBART01G04470 I 0.758
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.758
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.758
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.758
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.758
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.758
OS01G0169400 Oryza sativa OS01G0169400 I 0.758
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.758
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.758
Si002632m.g Setaria italica Si002632m.g I 0.758
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.758
Ca_08824 Cicer arietinum Ca_08824 I 0.758
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.758
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.758
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.758
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.758
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.758
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.758
F775_25656 Aegilops tauschii F775_25656 I 0.747
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.747
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.747
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.747
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.747
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.747
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.745
AMTR_s00083p00067130 Amborella trichopoda AMTR_s00083p00067130 I 0.742
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.738
Bra035860 Brassica rapa Bra035860 I 0.737
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.737
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.737
Cla003499 Citrullus lanatus Cla003499 I 0.737
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.737
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.737
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.737
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.737
PK18922.1 Cannabis sativa PK18922.1 I 0.737
PK21510.1 Cannabis sativa PK21510.1 I 0.737
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.727
mgf016361m Mimulus guttatus mgf016361m I 0.727
PK13228.1 Cannabis sativa PK13228.1 I 0.719
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.717
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.717
GSMUA_Achr7G23710_001 Musa acuminata GSMUA_Achr7G23710_001 I 0.717
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.717
Lus10028986.g Linum usitatissimum Lus10028986.g N 0.717
PK21617.1 Cannabis sativa PK21617.1 I 0.717
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.707
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.707
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.707
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.707
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.707
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.707
POPTR_0008s07150 Populus trichocarpa POPTR_0008s07150 N 0.707
POPTR_0010s19340 Populus trichocarpa POPTR_0010s19340 N 0.707
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.707
AS2 Vitis vinifera VIT_00s0340g00090 I 0.707
LBD21 Vitis vinifera VIT_13s0067g01450 N 0.707
Ca_20200 Cicer arietinum Ca_20200 I 0.707
Cla005851 Citrullus lanatus Cla005851 I 0.707
29814.m000742 Ricinus communis 29814.m000742 N 0.707
cassava20837.m1 Manihot esculenta cassava20837.m1 N 0.707
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.707
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.707
Eucgr.G03078 Eucalyptus grandis Eucgr.G03078 N 0.707
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.705
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.702