PGSC0003DMG400027078 (Solanum tuberosum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 PGSC0003DMG400027078 T245837_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.889 0.889
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400069646 LOB 10 108

Links

Other LOB family TFs
Other Solanum tuberosum TFs

168 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.980
LOB Vitis vinifera VIT_17s0000g09010 I 0.899
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.899
LOB Arabidopsis thaliana AT5G63090 D 0.889
Bo3g104760 Brassica oleracea Bo3g104760 I 0.889
Bra038606 Brassica rapa Bra038606 I 0.889
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.889
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.889
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.889
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.889
LOB Arabidopsis lyrata scaffold_802995.1 I 0.889
TCM_012190 Theobroma cacao TCM_012190 I 0.889
Cla019510 Citrullus lanatus Cla019510 I 0.889
30147.m013890 Ricinus communis 30147.m013890 I 0.889
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.889
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.889
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.889
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.889
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.889
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.889
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.889
MDP0000130659 Malus domestica MDP0000130659 I 0.889
MDP0000254288 Malus domestica MDP0000254288 I 0.889
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.889
Bo9g017470 Brassica oleracea Bo9g017470 I 0.879
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.879
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.879
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.879
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.879
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.879
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.879
Ca_08824 Cicer arietinum Ca_08824 I 0.879
Pm024312 Prunus mume Pm024312 I 0.879
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.879
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.879
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.879
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.869
Ca_07463 Cicer arietinum Ca_07463 I 0.869
mgf024603m Mimulus guttatus mgf024603m I 0.869
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.869
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.869
Bra035860 Brassica rapa Bra035860 I 0.859
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.848
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.848
OB01G14220 Oryza brachyantha OB01G14220 I 0.848
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.848
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.848
Si002632m.g Setaria italica Si002632m.g I 0.848
29917.m001993 Ricinus communis 29917.m001993 I 0.848
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.848
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.848
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.848
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.848
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.848
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.848
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.848
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.848
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.848
PK21510.1 Cannabis sativa PK21510.1 I 0.848
OBART01G04470 Oryza barthii OBART01G04470 I 0.838
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.838
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.838
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.838
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.838
OS01G0169400 Oryza sativa OS01G0169400 I 0.838
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.838
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.838
Pm015649 Prunus mume Pm015649 I 0.838
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.838
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.838
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.838
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.838
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.838
PK26472.1 Cannabis sativa PK26472.1 I 0.838
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.828
F775_25656 Aegilops tauschii F775_25656 I 0.828
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.828
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.828
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.828
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.828
Ca_24372 Cicer arietinum Ca_24372 I 0.828
Cla010600 Citrullus lanatus Cla010600 I 0.828
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.828
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.828
PK18922.1 Cannabis sativa PK18922.1 I 0.825
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.818
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.818
TCM_016952 Theobroma cacao TCM_016952 I 0.818
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.818
Cla003499 Citrullus lanatus Cla003499 I 0.818
Cla017388 Citrullus lanatus Cla017388 I 0.818
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.818
mgf016361m Mimulus guttatus mgf016361m I 0.818
MDP0000848210 Malus domestica MDP0000848210 I 0.818
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.818
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.808
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.798
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.798
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.798
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.798
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.798
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.798
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.796
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.788
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.788
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.788
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.788
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.778
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.768
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.768
F775_33210 Aegilops tauschii F775_33210 I 0.767
Lus10001139.g Linum usitatissimum Lus10001139.g I 0.759
mgf003146m Mimulus guttatus mgf003146m I 0.758
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.753
LBD25 Arabidopsis thaliana AT3G27650 I 0.747
Bo7g085860 Brassica oleracea Bo7g085860 I 0.747
Bra025294 Brassica rapa Bra025294 I 0.747
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.747
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.747
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.747
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.747
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.747
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.737
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.737
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.729
Bo9g008330 Brassica oleracea Bo9g008330 I 0.727
Bra039072 Brassica rapa Bra039072 I 0.727
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.727
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.727
GSMUA_Achr10G20760_001 Musa acuminata GSMUA_Achr10G20760_001 I 0.725
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.723
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.717
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.717
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.717
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.717
MDP0000643326 Malus domestica MDP0000643326 I 0.717
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.709
LBD6 Arabidopsis thaliana AT1G65620 D 0.707
Bo2g051420 Brassica oleracea Bo2g051420 I 0.707
Bo2g144870 Brassica oleracea Bo2g144870 I 0.707
Bra033019 Brassica rapa Bra033019 I 0.707
Bra039733 Brassica rapa Bra039733 I 0.707
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.707
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.707
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.707
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.707
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.707
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.707
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.707
TCM_024217 Theobroma cacao TCM_024217 I 0.707
AS2 Vitis vinifera VIT_00s0340g00090 I 0.707
Ca_20200 Cicer arietinum Ca_20200 I 0.707
Cla005851 Citrullus lanatus Cla005851 I 0.707
29929.m004500 Ricinus communis 29929.m004500 I 0.707
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.707
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.707
mgf014755m Mimulus guttatus mgf014755m I 0.707
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.707
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.707
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.707
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.707
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.707
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.707
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.707
MDP0000273432 Malus domestica MDP0000273432 I 0.707
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.707
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.707
PK29334.1 Cannabis sativa PK29334.1 I 0.703