Carubv10025704m.g (Capsella rubella)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Carubv10025704m.g T246789_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10025704m LOB 5 103

Links

Other LOB family TFs
Other Capsella rubella TFs

120 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.2475s0001 Capsella grandiflora Cagra.2475s0001 I 1.000
Bostr.27895s0126 Boechera stricta Bostr.27895s0126 N 0.970
LBD10 Arabidopsis lyrata scaffold_400352.1 I 0.960
LBD10 Arabidopsis thaliana AT2G23660 I 0.949
Bo4g151770 Brassica oleracea Bo4g151770 I 0.909
Bra032153 Brassica rapa Bra032153 I 0.909
Thhalv10000525m.g Eutrema salsugineum Thhalv10000525m.g I 0.899
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.796
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.787
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.778
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.778
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.778
Pm026450 Prunus mume Pm026450 I 0.778
PK18922.1 Cannabis sativa PK18922.1 I 0.772
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.768
MDP0000310871 Malus domestica MDP0000310871 I 0.768
F775_33210 Aegilops tauschii F775_33210 I 0.767
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.758
LBD36 Arabidopsis thaliana AT5G66870 I 0.758
Bo7g064360 Brassica oleracea Bo7g064360 I 0.758
Bra012112 Brassica rapa Bra012112 I 0.758
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.758
TCM_000560 Theobroma cacao TCM_000560 I 0.758
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.758
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.758
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.758
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.758
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.758
MDP0000562305 Malus domestica MDP0000562305 I 0.758
Bo2g167820 Brassica oleracea Bo2g167820 I 0.747
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.747
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I 0.747
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.747
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.747
PK21617.1 Cannabis sativa PK21617.1 I 0.739
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.737
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.737
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.737
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.737
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.737
VIT_07s0197g00040 Vitis vinifera VIT_07s0197g00040 I 0.737
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.737
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.737
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.737
mgf004296m Mimulus guttatus mgf004296m I 0.737
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.737
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.737
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.737
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.737
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.737
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.737
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.737
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.727
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.727
Cla020438 Citrullus lanatus Cla020438 I 0.727
29676.m001633 Ricinus communis 29676.m001633 I 0.727
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.727
MDP0000777060 Malus domestica MDP0000777060 I 0.727
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.723
BGIOSGA013119 Oryza indica BGIOSGA013119 I 0.717
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.717
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.717
OB03G34080 Oryza brachyantha OB03G34080 I 0.717
OGLUM03G26820 Oryza glumaepatula OGLUM03G26820 I 0.717
ONIVA11G15310 Oryza nivara ONIVA11G15310 I 0.717
ORGLA03G0240600 Oryza glaberrima ORGLA03G0240600 I 0.717
ORUFI03G26840 Oryza rufipogon ORUFI03G26840 I 0.717
OS03G0612400 Oryza sativa OS03G0612400 I 0.717
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.717
Cla005851 Citrullus lanatus Cla005851 I 0.717
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.717
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.717
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.717
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.717
MDP0000197526 Malus domestica MDP0000197526 I 0.717
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.717
LBD6 Arabidopsis thaliana AT1G65620 D 0.707
Bo2g051420 Brassica oleracea Bo2g051420 I 0.707
Bra039733 Brassica rapa Bra039733 I 0.707
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.707
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.707
GLYMA04G11991 Glycine max GLYMA04G11991 I 0.707
GLYMA11G06210 Glycine max GLYMA11G06210 I 0.707
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.707
GRMZM2G362627 Zea mays GRMZM2G362627 I 0.707
MTR_5g017950 Medicago truncatula MTR_5g017950 I 0.707
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.707
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.707
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.707
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.707
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.707
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.707
Si002599m.g Setaria italica Si002599m.g I 0.707
Si024114m.g Setaria italica Si024114m.g I 0.707
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.707
TCM_024217 Theobroma cacao TCM_024217 I 0.707
AS2 Vitis vinifera VIT_00s0340g00090 I 0.707
VIT_07s0197g00030 Vitis vinifera VIT_07s0197g00030 I 0.707
Ca_02125 Cicer arietinum Ca_02125 I 0.707
Ca_11161 Cicer arietinum Ca_11161 I 0.707
Pm010483 Prunus mume Pm010483 I 0.707
29929.m004500 Ricinus communis 29929.m004500 I 0.707
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.707
mgf014755m Mimulus guttatus mgf014755m I 0.707
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.707
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.707
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.707
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.707
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.707
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.707
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.707
MDP0000273432 Malus domestica MDP0000273432 I 0.707
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.707
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.707
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.707
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.707
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.707
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.707
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.707
MDP0000167580 Malus domestica MDP0000167580 I 0.700