MDP0000133546 (Malus domestica)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 MDP0000133546 T247073_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.778 0.778
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000133546 LOB 9 107

Links

Other LOB family TFs
Other Malus domestica TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK18922.1 Cannabis sativa PK18922.1 I 0.947
MDP0000643326 Malus domestica MDP0000643326 I 0.808
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.798
Cla005851 Citrullus lanatus Cla005851 I 0.798
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.798
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.798
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.798
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.798
MDP0000273432 Malus domestica MDP0000273432 I 0.798
GSMUA_Achr11G26500_001 Musa acuminata GSMUA_Achr11G26500_001 I 0.788
GSMUA_Achr5G25770_001 Musa acuminata GSMUA_Achr5G25770_001 I 0.788
AS2 Vitis vinifera VIT_00s0340g00090 I 0.788
mgf014755m Mimulus guttatus mgf014755m I 0.788
LBD6 Arabidopsis thaliana AT1G65620 D 0.778
Bo2g051420 Brassica oleracea Bo2g051420 I 0.778
Bra039733 Brassica rapa Bra039733 I 0.778
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.778
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.778
TCM_024217 Theobroma cacao TCM_024217 I 0.778
29929.m004500 Ricinus communis 29929.m004500 I 0.778
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.778
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.778
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.778
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.778
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.778
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.778
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.768
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.768
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.768
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.768
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.768
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.768
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.768
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.758
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.747
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.747
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.737
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.737
F775_21760 Aegilops tauschii F775_21760 I 0.737
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.737
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.737
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.737
LPERR05G13240 Leersia perrieri LPERR05G13240 I 0.737
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.737
OB05G24560 Oryza brachyantha OB05G24560 I 0.737
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.737
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.737
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.737
OS05G0417000 Oryza sativa OS05G0417000 I 0.737
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.737
Si002599m.g Setaria italica Si002599m.g I 0.737
Ca_20200 Cicer arietinum Ca_20200 I 0.737
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.737
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.737
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.734
LBD6 Oryza indica BGIOSGA004955 I 0.727
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.727
F775_20715 Aegilops tauschii F775_20715 I 0.727
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.727
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.727
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.727
OB01G48740 Oryza brachyantha OB01G48740 I 0.727
OBART01G39990 Oryza barthii OBART01G39990 I 0.727
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.727
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.727
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.727
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.727
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.727
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.727
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.727
LBD6 Oryza sativa OS01G0889400 I 0.727
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.727
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.727
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.727
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.727
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.727
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.727
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.727
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.727
PK29334.1 Cannabis sativa PK29334.1 I 0.719
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.717
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.717
Si024114m.g Setaria italica Si024114m.g I 0.717
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.717
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.717
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.717
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.717
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.717
PK21617.1 Cannabis sativa PK21617.1 I 0.717
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.707
LOB Arabidopsis thaliana AT5G63090 D 0.707
Bo3g104760 Brassica oleracea Bo3g104760 I 0.707
Bo9g017470 Brassica oleracea Bo9g017470 I 0.707
Bra038606 Brassica rapa Bra038606 I 0.707
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.707
F775_25656 Aegilops tauschii F775_25656 I 0.707
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.707
OB01G14220 Oryza brachyantha OB01G14220 I 0.707
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.707
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.707
LOB Arabidopsis lyrata scaffold_802995.1 I 0.707
Si002632m.g Setaria italica Si002632m.g I 0.707
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.707
30147.m013890 Ricinus communis 30147.m013890 I 0.707
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.707
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.707
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.707
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.707
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.707
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.707
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.707
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.707