CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ONIVA08G12870
(
Oryza nivara
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
ONIVA08G12870
T245668_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.728
0.728
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.728
0.728
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ONIVA08G12870.1
LOB
6
113
PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGAINVSKMLQYIKSDFFLPNELPAQQQGDAVSSLVYEANDRIRDPVYGCNQVSQLQMQLAVAQGEILCSQM
ONIVA08G12870.2
LOB
6
96
PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGAINVSKMLQYIKSDFFLPNELPAQQQGDAVSSLVYEANDRIRDPVYGCVGPGP
ONIVA08G12870.3
LOB
6
113
PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGAINVSKMLQYIKSDFFLPNELPAQQQGDAVSSLVYEANDRIRDPVYGCNQVSQLQMQLAVAQGEILCSQM
ONIVA08G12870.4
LOB
6
97
PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGAINVSKMLQYIKSDFFLPNELPAQQQGDAVSSLVYEANDRIRDPVYGCVGPGPS
Links
Other
LOB
family TFs
Other
Oryza nivara
TFs
181 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OMERI01G39870
Oryza meridionalis
OMERI01G39870
I
0.963
ORGLA01G0366500
Oryza glaberrima
ORGLA01G0366500
I
0.951
ORUFI01G46340
Oryza rufipogon
ORUFI01G46340
I
0.947
OBART05G12620
Oryza barthii
OBART05G12620
I
0.914
ORGLA05G0108100
Oryza glaberrima
ORGLA05G0108100
I
0.914
BGIOSGA000185
Oryza indica
BGIOSGA000185
N
0.890
Si024229m.g
Setaria italica
Si024229m.g
I
0.889
Sb09g016240
Sorghum bicolor
Sb09g016240
I
0.889
GRMZM2G044150
Zea mays
GRMZM2G044150
I
0.877
F775_24149
Aegilops tauschii
F775_24149
I
0.877
TRIUR3_27421
Triticum urartu
TRIUR3_27421
I
0.877
Gorai.011G290800
Gossypium raimondii
Gorai.011G290800
I
0.840
MDP0000265429
Malus domestica
MDP0000265429
I
0.840
Gorai.003G149600
Gossypium raimondii
Gorai.003G149600
I
0.840
TCM_042447
Theobroma cacao
TCM_042447
I
0.840
PDK_20s1810211g001
Phoenix dactylifera
PDK_20s1810211g001
I
0.840
POPTR_0008s07280
Populus trichocarpa
POPTR_0008s07280
I
0.827
mgf018189m
Mimulus guttatus
mgf018189m
I
0.827
Cla007354
Citrullus lanatus
Cla007354
I
0.827
ASL5
Vitis vinifera
VIT_06s0004g07200
I
0.827
Cucsa.144430
Cucumis sativus
Cucsa.144430
I
0.827
Ciclev10032929m.g
Citrus clementina
Ciclev10032929m.g
I
0.827
Lus10031285.g
Linum usitatissimum
Lus10031285.g
I
0.827
GLYMA02G43030
Glycine max
GLYMA02G43030
I
0.827
orange1.1g036782m.g
Citrus sinensis
orange1.1g036782m.g
I
0.827
SapurV1A.0673s0190
Salix purpurea
SapurV1A.0673s0190
I
0.827
PRUPE_ppa012504mg
Prunus persica
PRUPE_ppa012504mg
I
0.827
SapurV1A.0061s0670
Salix purpurea
SapurV1A.0061s0670
I
0.827
POPTR_0010s19180
Populus trichocarpa
POPTR_0010s19180
I
0.815
TCM_042212
Theobroma cacao
TCM_042212
I
0.815
VIT_13s0067g01880
Vitis vinifera
VIT_13s0067g01880
I
0.815
POPTR_0009s08060
Populus trichocarpa
POPTR_0009s08060
I
0.815
gene21039-v1.0-hybrid
Fragaria vesca
gene21039-v1.0-hybrid
I
0.815
Pavir.J18260
Panicum virgatum
Pavir.J18260
I
0.815
SapurV1A.0042s0120
Salix purpurea
SapurV1A.0042s0120
I
0.815
MDP0000861160
Malus domestica
MDP0000861160
I
0.815
evm.TU.supercontig_2.374
Carica papaya
evm.TU.supercontig_2.374
I
0.815
Eucgr.B03991
Eucalyptus grandis
Eucgr.B03991
I
0.815
cassava26200.m1
Manihot esculenta
cassava26200.m1
I
0.815
Ca_13388
Cicer arietinum
Ca_13388
I
0.815
GLYMA18G02780
Glycine max
GLYMA18G02780
I
0.815
MTR_3g071590
Medicago truncatula
MTR_3g071590
I
0.802
Bra018335
Brassica rapa
Bra018335
I
0.802
ASL5
Arabidopsis lyrata
fgenesh2_kg.4__983__AT2G30130.1
I
0.802
Bo4g059700
Brassica oleracea
Bo4g059700
I
0.802
GSMUA_Achr9G18030_001
Musa acuminata
GSMUA_Achr9G18030_001
I
0.802
Si026864m.g
Setaria italica
Si026864m.g
I
0.802
Carubv10025543m.g
Capsella rubella
Carubv10025543m.g
I
0.802
LBD12
Arabidopsis thaliana
AT2G30130
I
0.802
PDK_20s1728161g001
Phoenix dactylifera
PDK_20s1728161g001
I
0.802
POPTR_0001s28840
Populus trichocarpa
POPTR_0001s28840
I
0.790
Ciclev10029962m.g
Citrus clementina
Ciclev10029962m.g
I
0.790
GLYMA11G29450
Glycine max
GLYMA11G29450
I
0.790
GSMUA_Achr5G29470_001
Musa acuminata
GSMUA_Achr5G29470_001
I
0.790
PDK_20s1342451g001
Phoenix dactylifera
PDK_20s1342451g001
I
0.790
GRMZM2G025989
Zea mays
GRMZM2G025989
I
0.778
LPERR05G10020
Leersia perrieri
LPERR05G10020
I
0.778
GSMUA_Achr3G10050_001
Musa acuminata
GSMUA_Achr3G10050_001
I
0.778
MTR_5g083230
Medicago truncatula
MTR_5g083230
I
0.778
OB05G20740
Oryza brachyantha
OB05G20740
I
0.778
Lus10017431.g
Linum usitatissimum
Lus10017431.g
I
0.778
ONIVA05G13090
Oryza nivara
ONIVA05G13090
I
0.778
Lus10007525.g
Linum usitatissimum
Lus10007525.g
I
0.778
OMERI05G11330
Oryza meridionalis
OMERI05G11330
I
0.778
chr6.CM0738.260.nd
Lotus japonicus
chr6.CM0738.260.nd
I
0.778
OGLUM05G13250
Oryza glumaepatula
OGLUM05G13250
I
0.778
BGIOSGA018245
Oryza indica
BGIOSGA018245
I
0.778
OPUNC05G10670
Oryza punctata
OPUNC05G10670
I
0.778
OS05G0346800
Oryza sativa
OS05G0346800
I
0.778
ORUFI05G13610
Oryza rufipogon
ORUFI05G13610
I
0.778
PGSC0003DMG400023939
Solanum tuberosum
PGSC0003DMG400023939
I
0.778
BGIOSGA018244
Oryza indica
BGIOSGA018244
I
0.778
Solyc11g045530.1
Solanum lycopersicum
Solyc11g045530.1
I
0.768
Cla009336
Citrullus lanatus
Cla009336
I
0.768
SapurV1A.0059s0540
Salix purpurea
SapurV1A.0059s0540
I
0.768
Lus10040638.g
Linum usitatissimum
Lus10040638.g
I
0.768
Cla013678
Citrullus lanatus
Cla013678
I
0.768
Cucsa.118370
Cucumis sativus
Cucsa.118370
I
0.768
MTR_4g083680
Medicago truncatula
MTR_4g083680
I
0.768
PGSC0003DMG400008649
Solanum tuberosum
PGSC0003DMG400008649
I
0.768
PGSC0003DMG400021204
Solanum tuberosum
PGSC0003DMG400021204
I
0.768
SELMODRAFT_49085
Selaginella moellendorffii
SELMODRAFT_49085
I
0.765
SELMODRAFT_48883
Selaginella moellendorffii
SELMODRAFT_48883
I
0.765
SELMODRAFT_58936
Selaginella moellendorffii
SELMODRAFT_58936
I
0.765
Cla013598
Citrullus lanatus
Cla013598
I
0.765
Cucsa.239660
Cucumis sativus
Cucsa.239660
I
0.765
Pavir.J21476
Panicum virgatum
Pavir.J21476
I
0.758
Traes_1BL_04EFBAECF
Triticum aestivum
Traes_1BL_04EFBAECF
I
0.758
Pavir.J22399
Panicum virgatum
Pavir.J22399
I
0.758
MLOC_54949
Hordeum vulgare
MLOC_54949
I
0.758
Pavir.Ca01985
Panicum virgatum
Pavir.Ca01985
I
0.758
Traes_1AL_DB7593004
Triticum aestivum
Traes_1AL_DB7593004
I
0.758
cassava27818.m1
Manihot esculenta
cassava27818.m1
I
0.756
PRUPE_ppa012322mg
Prunus persica
PRUPE_ppa012322mg
I
0.756
orange1.1g031034m.g
Citrus sinensis
orange1.1g031034m.g
I
0.756
Ciclev10016993m.g
Citrus clementina
Ciclev10016993m.g
I
0.756
MDP0000121203
Malus domestica
MDP0000121203
I
0.756
Lus10018275.g
Linum usitatissimum
Lus10018275.g
I
0.756
Aquca_118_00035
Aquilegia coerulea
Aquca_118_00035
I
0.756
mgf026046m
Mimulus guttatus
mgf026046m
I
0.756
mgf022958m
Mimulus guttatus
mgf022958m
I
0.756
GLYMA15G13410
Glycine max
GLYMA15G13410
I
0.756
gene20083-v1.0-hybrid
Fragaria vesca
gene20083-v1.0-hybrid
I
0.756
PK11564.1
Cannabis sativa
PK11564.1
I
0.756
Gorai.010G170700
Gossypium raimondii
Gorai.010G170700
I
0.756
PK24688.1
Cannabis sativa
PK24688.1
I
0.756
Solyc02g069440.2
Solanum lycopersicum
Solyc02g069440.2
I
0.756
LBD3
Vitis vinifera
VIT_19s0027g01120
I
0.756
LBD4
Vitis vinifera
VIT_00s0125g00290
I
0.756
GLYMA20G02850
Glycine max
GLYMA20G02850
I
0.756
Traes_5BL_CE4CF3B5C
Triticum aestivum
Traes_5BL_CE4CF3B5C
I
0.753
Gorai.009G149900
Gossypium raimondii
Gorai.009G149900
I
0.753
chr4.CM0229.130.nc
Lotus japonicus
chr4.CM0229.130.nc
I
0.753
Ca_08998
Cicer arietinum
Ca_08998
I
0.753
F775_08326
Aegilops tauschii
F775_08326
I
0.753
MDP0000277239
Malus domestica
MDP0000277239
I
0.753
GSMUA_Achr8G02800_001
Musa acuminata
GSMUA_Achr8G02800_001
I
0.753
GSMUA_Achr2G13170_001
Musa acuminata
GSMUA_Achr2G13170_001
I
0.744
POPTR_0007s08290
Populus trichocarpa
POPTR_0007s08290
I
0.744
Gorai.002G104500
Gossypium raimondii
Gorai.002G104500
I
0.744
Ciclev10006113m.g
Citrus clementina
Ciclev10006113m.g
I
0.744
PRUPE_ppa012253mg
Prunus persica
PRUPE_ppa012253mg
I
0.744
orange1.1g044340m.g
Citrus sinensis
orange1.1g044340m.g
I
0.744
Pm011040
Prunus mume
Pm011040
I
0.744
GLYMA08G17990
Glycine max
GLYMA08G17990
I
0.744
GLYMA07G35000
Glycine max
GLYMA07G35000
I
0.744
MDP0000268890
Malus domestica
MDP0000268890
I
0.744
30169.m006340
Ricinus communis
30169.m006340
I
0.744
GSMUA_Achr4G32000_001
Musa acuminata
GSMUA_Achr4G32000_001
I
0.744
MDP0000284409
Malus domestica
MDP0000284409
I
0.744
MLOC_5148
Hordeum vulgare
MLOC_5148
I
0.741
TRIUR3_11082
Triticum urartu
TRIUR3_11082
I
0.741
Si011647m.g
Setaria italica
Si011647m.g
I
0.741
cassava30732.valid.m1
Manihot esculenta
cassava30732.valid.m1
I
0.741
evm.TU.supercontig_19.133
Carica papaya
evm.TU.supercontig_19.133
I
0.737
Pavir.Ia01095
Panicum virgatum
Pavir.Ia01095
I
0.732
Carubv10010462m.g
Capsella rubella
Carubv10010462m.g
I
0.732
Cagra.1508s0061
Capsella grandiflora
Cagra.1508s0061
I
0.732
Lus10031769.g
Linum usitatissimum
Lus10031769.g
I
0.732
Bostr.15697s0446
Boechera stricta
Bostr.15697s0446
I
0.732
LBD4
Arabidopsis thaliana
AT1G31320
D
0.732
Thhalv10008917m.g
Eutrema salsugineum
Thhalv10008917m.g
I
0.732
LBD4
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1002773
I
0.732
Bo7g041000
Brassica oleracea
Bo7g041000
I
0.732
Sb01g012810
Sorghum bicolor
Sb01g012810
I
0.732
Pavir.Ib04170
Panicum virgatum
Pavir.Ib04170
I
0.732
Si037583m.g
Setaria italica
Si037583m.g
I
0.728
Bra014907
Brassica rapa
Bra014907
I
0.728
BRADI4G44850
Brachypodium distachyon
BRADI4G44850
I
0.728
Pm018982
Prunus mume
Pm018982
I
0.727
mgf019461m
Mimulus guttatus
mgf019461m
I
0.727
gene28202-v1.0-hybrid
Fragaria vesca
gene28202-v1.0-hybrid
I
0.727
Gorai.010G195100
Gossypium raimondii
Gorai.010G195100
I
0.727
MDP0000155138
Malus domestica
MDP0000155138
I
0.727
OGLUM04G05130
Oryza glumaepatula
OGLUM04G05130
I
0.720
GRMZM2G447176
Zea mays
GRMZM2G447176
I
0.720
BGIOSGA013249
Oryza indica
BGIOSGA013249
I
0.720
ONIVA03G29300
Oryza nivara
ONIVA03G29300
I
0.720
GLYMA15G41020
Glycine max
GLYMA15G41020
I
0.720
ORUFI03G29410
Oryza rufipogon
ORUFI03G29410
I
0.720
OMERI03G24920
Oryza meridionalis
OMERI03G24920
I
0.720
e_gw1.192.35.1
Physcomitrella patens
e_gw1.192.35.1
I
0.720
PRUPE_ppa012275mg
Prunus persica
PRUPE_ppa012275mg
I
0.717
Aquca_030_00227
Aquilegia coerulea
Aquca_030_00227
I
0.717
Solyc06g082310.2
Solanum lycopersicum
Solyc06g082310.2
I
0.717
29729.m002278
Ricinus communis
29729.m002278
I
0.717
GSMUA_Achr6G15660_001
Musa acuminata
GSMUA_Achr6G15660_001
I
0.717
cassava20865.m1
Manihot esculenta
cassava20865.m1
I
0.717
Pm000193
Prunus mume
Pm000193
I
0.717
PGSC0003DMG400030456
Solanum tuberosum
PGSC0003DMG400030456
I
0.717
Gorai.009G112900
Gossypium raimondii
Gorai.009G112900
I
0.716
SapurV1A.0284s0080
Salix purpurea
SapurV1A.0284s0080
I
0.716
orange1.1g038565m.g
Citrus sinensis
orange1.1g038565m.g
I
0.716
GLYMA14G06140
Glycine max
GLYMA14G06140
I
0.707
Lus10031855.g
Linum usitatissimum
Lus10031855.g
I
0.707
PGSC0003DMG402023851
Solanum tuberosum
PGSC0003DMG402023851
I
0.707
MDP0000194766
Malus domestica
MDP0000194766
I
0.707
Gorai.004G234100
Gossypium raimondii
Gorai.004G234100
I
0.707
OPUNC03G25820
Oryza punctata
OPUNC03G25820
I
0.707
Thhalv10017267m.g
Eutrema salsugineum
Thhalv10017267m.g
I
0.704