Bra026903 (Brassica rapa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bra026903 T248028_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.968 0.771
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.965 0.800
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.964 0.771
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.964 0.771
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.964 0.771
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.961 0.629
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.946 0.771
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.945 0.757
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.944 0.643
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.944 0.643
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.944 0.643
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.939 0.614
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.930 0.671
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.920 0.771
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.915 0.714
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.886 0.471
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra026903.1-P MADF 84 167

Links

Other MADF family TFs
Other Brassica rapa TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000659701 Angiostrongylus cantonensis ACAC_0000659701 N
ACOC_0000451501 Angiostrongylus costaricensis ACOC_0000451501 N
ANCCAN_07722 Ancylostoma caninum ANCCAN_07722 N
ANCCEY_03457 Ancylostoma ceylanicum ANCCEY_03457 N
ANCDUO_02619 Ancylostoma duodenale ANCDUO_02619 N
ASIM_0000091301 Anisakis simplex ASIM_0000091301 I
ASIM_0000512001 Anisakis simplex ASIM_0000512001 N
ASU_06962 Ascaris suum ASU_06962 N
Bm7459 Brugia malayi Bm7459 N
BTMF_0000953701 Brugia timori BTMF_0000953701 N
BXY_1512700 Bursaphelenchus xylophilus BXY_1512700 N
CBG06922 Caenorhabditis briggsae CBG06922 N
CRE15772 Caenorhabditis remanei CRE15772 N
EEL_0000068901 Elaeophora elaphi EEL_0000068901 N
SMAD1 Ochotona princeps ENSOPRG00000012775 I
EVEC_0000636701 Enterobius vermicularis EVEC_0000636701 N
Hba_13214 Heterorhabditis bacteriophora Hba_13214 N
HCOI00251100 Haemonchus contortus HCOI00251100 N
HCOI01543700 Haemonchus contortus HCOI01543700 N
HPBE_0002664601 Heligmosomoides bakeri HPBE_0002664601 N
HPLM_0002015601 Haemonchus placei HPLM_0002015601 N
L596_g26009 Steinernema carpocapsae L596_g26009 N
L892_g4529 Steinernema scapterisci L892_g4529 N
L893_g15060 Steinernema glaseri L893_g15060 N
L898_g14583 Steinernema monticolum L898_g14583 N
LOAG_01471 Loa loa LOAG_01471 N
maker-nMf.1.1.scaf00076-augustus-gene-0.21 Meloidogyne floridensis maker-nMf.1.1.scaf00076-augustus-gene-0.21 N
Minc06478 Meloidogyne incognita Minc06478 N
nAv.1.0.1.g05112 Acanthocheilonema viteae nAv.1.0.1.g05112 N
NBR_0000271401 Nippostrongylus brasiliensis NBR_0000271401 N
NBR_0000522801 Nippostrongylus brasiliensis NBR_0000522801 I
nDi.2.2.2.g00640 Dirofilaria immitis nDi.2.2.2.g00640 N
NECAME_19535 Necator americanus NECAME_19535 N
nLs.2.1.2.g02003 Litomosoides sigmodontis nLs.2.1.2.g02003 N
nOo.2.0.1.g00974 Onchocerca ochengi nOo.2.0.1.g00974 N
OFLC_0000052301 Onchocerca flexuosa OFLC_0000052301 N
Ppa-sma-2 Pristionchus pacificus PPA15247 N
PTRK_0000297300 Parastrongyloides trichosuri PTRK_0000297300 N
RSKR_0000082500 Rhabditophanes kr3021 RSKR_0000082500 N
SMUV_0000477801 Syphacia muris SMUV_0000477801 N
SPAL_0001290200 Strongyloides papillosus SPAL_0001290200 N
SSTP_0000571600 Strongyloides stercoralis SSTP_0000571600 N
SVE_0161800 Strongyloides venezuelensis SVE_0161800 N
SVUK_0000145101 Strongylus vulgaris SVUK_0000145101 N
TCLT_0000791701 Thelazia callipaeda TCLT_0000791701 N
sma-2 Caenorhabditis elegans WBGene00004856 N
WBGene00245189 Onchocerca volvulus WBGene00245189 N
WUBG_02400 Wuchereria bancrofti WUBG_02400 N