gene30101-v1.0-hybrid (Fragaria vesca)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 gene30101-v1.0-hybrid T250696_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00 		Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538 		0.925 0.753
AT3G10030
M06971_2.00 		Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a 		0.925 0.753
AT3G10030
M06972_2.00 		Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a 		0.925 0.753
PK04914.1
M01262_2.00 		Cannabis sativa
DCCGTYAN
NTRACGGH		 PBM
Lambert et al.(2019)
pTH10098 		0.919 0.726
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna30101.1-v1.0-hybrid MADF 139 219

Links

Other MADF family TFs
Other Fragaria vesca TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000002164 Ailuropoda melanoleuca ENSAMEG00000002164 I
ENSAMEG00000006449 Ailuropoda melanoleuca ENSAMEG00000006449 I
ENSAMXG00000014210 Astyanax mexicanus ENSAMXG00000014210 I
ASCL1 Bos taurus ENSBTAG00000016227 I
ASCL2 Bos taurus ENSBTAG00000026769 I
ENSBTAP00000021592-D1 Bos grunniens ENSBTAP00000021592-D1 I
ASCL1 Canis familiaris ENSCAFG00000007324 I
ASCL2 Canis familiaris ENSCAFG00000010103 I
ASCL2 Callithrix jacchus ENSCJAG00000011549 I
ASCL1 Callithrix jacchus ENSCJAG00000014345 I
ASCL1 Cavia porcellus ENSCPOG00000020666 I
ENSCPOG00000023523 Cavia porcellus ENSCPOG00000023523 I
ENSCSAG00000018938 Chlorocebus sabaeus ENSCSAG00000018938 I
ENSCSAG00000018956 Chlorocebus sabaeus ENSCSAG00000018956 I
ascl1a Danio rerio ENSDARG00000038386 I
ASCL1 Dasypus novemcinctus ENSDNOG00000001616 I
ENSFALG00000014466 Ficedula albicollis ENSFALG00000014466 I
ASCL1 Felis catus ENSFCAG00000008250 I
ASCL2 Felis catus ENSFCAG00000018914 I
ASCL1 Homo sapiens ENSG00000139352 D
ASCL2 Homo sapiens ENSG00000183734 D
ascl1a Gasterosteus aculeatus ENSGACG00000020048 I
ENSGALG00000023607 Gallus gallus ENSGALG00000023607 I
ASCL1 Gorilla gorilla ENSGGOG00000005479 I
ASCL2 Gorilla gorilla ENSGGOG00000007421 I
ENSGMOG00000002268 Gadus morhua ENSGMOG00000002268 I
ENSLACG00000010712 Latimeria chalumnae ENSLACG00000010712 I
ASCL2 Loxodonta africana ENSLAFG00000020947 I
ENSMEUG00000010370 Macropus eugenii ENSMEUG00000010370 I
ASCL2 Macaca mulatta ENSMMUG00000001322 I
ASCL1 Macaca mulatta ENSMMUG00000005747 I
ASCL1 Monodelphis domestica ENSMODG00000002347 I
ENSMPUG00000019849 Mustela putorius furo ENSMPUG00000019849 I
Ascl2 Mus musculus ENSMUSG00000009248 D
Ascl1 Mus musculus ENSMUSG00000020052 D
ENSNLEG00000002663 Nomascus leucogenys ENSNLEG00000002663 I
ENSNLEG00000006410 Nomascus leucogenys ENSNLEG00000006410 I
ASCL1 Ornithorhynchus anatinus ENSOANG00000013973 I
ENSOARG00000015879 Ovis aries ENSOARG00000015879 I
ASCL1 Oryctolagus cuniculus ENSOCUG00000006992 I
ASCL1 Otolemur garnettii ENSOGAG00000030324 I
ASCL2 Otolemur garnettii ENSOGAG00000034847 I
ENSONIG00000021219 Oreochromis niloticus ENSONIG00000021219 I
ASCL2 Ochotona princeps ENSOPRG00000019165 I
ascl1a Oryzias latipes ENSORLG00000016504 I
ENSP00000266744 Macaca fascicularis ENSP00000266744 I
ENSPANG00000019205 Papio anubis ENSPANG00000019205 I
ASCL2 Procavia capensis ENSPCAG00000000676 I
ENSPFOG00000018073 Poecilia formosa ENSPFOG00000018073 I
ENSPPYG00000002926 Pongo abelii ENSPPYG00000002926 I
ENSPPYG00000004884 Pongo abelii ENSPPYG00000004884 I
ASCL2 Pan troglodytes ENSPTRG00000003174 I
ASCL2 Pteropus vampyrus ENSPVAG00000002964 I
ASCL1 Pteropus vampyrus ENSPVAG00000011272 I
Ascl1 Rattus norvegicus ENSRNOG00000004294 I
Ascl2 Rattus norvegicus ENSRNOG00000020434 I
ENSSHAG00000011936 Sarcophilus harrisii ENSSHAG00000011936 I
ENSSTOG00000028167 Ictidomys tridecemlineatus ENSSTOG00000028167 I
ENSSTOG00000028420 Ictidomys tridecemlineatus ENSSTOG00000028420 I
ascl1a Takifugu rubripes ENSTRUG00000012801 I
ASCL1 Tursiops truncatus ENSTTRG00000016243 I
ASCL1 Vicugna pacos ENSVPAG00000002018 I
ENSXMAG00000019614 Xiphophorus maculatus ENSXMAG00000019614 I
ISCW001920 Ixodes scapularis ISCW001920 I
Ogr07565 Ophisaurus gracilis Ogr07565 I
Pvit_15764 Pogona vitticeps Pvit_15764 I
ascl1 Xenopus tropicalis XB-GENE-1032967 I
ascl1.L Xenopus laevis XB-GENE-1032969 I
ascl1.S Xenopus laevis XB-GENE-17340658 I