AGL55 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT1G60920 T252854_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL55
M06983_2.00		 Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
AGL55_col_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G60920.1 MADS box 12 64

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27940.m000323 Ricinus communis 27940.m000323 I 0.000
AMTR_s00008p00092930 Amborella trichopoda AMTR_s00008p00092930 I 0.000
Aquca_053_00062 Aquilegia coerulea Aquca_053_00062 I 0.000
Aquca_082_00024 Aquilegia coerulea Aquca_082_00024 I 0.000
GATA26 Arabidopsis thaliana AT4G17570 D 0.000
GATA27 Arabidopsis thaliana AT5G47140 D 0.000
Bo1g017650 Brassica oleracea Bo1g017650 I 0.000
Bo2g132210 Brassica oleracea Bo2g132210 I 0.000
Bo7g077300 Brassica oleracea Bo7g077300 I 0.000
Bo8g049560 Brassica oleracea Bo8g049560 I 0.000
Bo9g069320 Brassica oleracea Bo9g069320 I 0.000
Bostr.28243s0001 Boechera stricta Bostr.28243s0001 I 0.000
Bostr.30275s0218 Boechera stricta Bostr.30275s0218 I 0.000
Bra017500 Brassica rapa Bra017500 I 0.000
Bra017501 Brassica rapa Bra017501 I 0.000
Bra021041 Brassica rapa Bra021041 I 0.000
Bra022107 Brassica rapa Bra022107 I 0.000
Bra024961 Brassica rapa Bra024961 I 0.000
Bra040167 Brassica rapa Bra040167 I 0.000
BRADI5G17370 Brachypodium distachyon BRADI5G17370 I 0.000
Cagra.3356s0048 Capsella grandiflora Cagra.3356s0048 I 0.000
Cagra.3675s0017 Capsella grandiflora Cagra.3675s0017 I 0.000
Carubv10007115m.g Capsella rubella Carubv10007115m.g I 0.000
Carubv10026597m.g Capsella rubella Carubv10026597m.g I 0.000
cassava42719.valid.m1 Manihot esculenta cassava42719.valid.m1 I 0.000
Ca_02313 Cicer arietinum Ca_02313 I 0.000
Ciclev10019614m.g Citrus clementina Ciclev10019614m.g I 0.000
estExt_fgenesh1_pg.C_1220019 Physcomitrella patens estExt_fgenesh1_pg.C_1220019 I 0.000
estExt_fgenesh1_pg.C_4100005 Physcomitrella patens estExt_fgenesh1_pg.C_4100005 I 0.000
Eucgr.D02129 Eucalyptus grandis Eucgr.D02129 I 0.000
Eucgr.E00364 Eucalyptus grandis Eucgr.E00364 I 0.000
evm.TU.supercontig_74.95 Carica papaya evm.TU.supercontig_74.95 I 0.000
F775_19309 Aegilops tauschii F775_19309 I 0.000
GATA26 Arabidopsis lyrata fgenesh2_kg.7__2553__AT4G17570.1 I 0.000
GLYMA01G41370 Glycine max GLYMA01G41370 I 0.000
GLYMA05G05320 Glycine max GLYMA05G05320 I 0.000
GLYMA11G04060 Glycine max GLYMA11G04060 I 0.000
GLYMA17G15610 Glycine max GLYMA17G15610 I 0.000
Gorai.003G177500 Gossypium raimondii Gorai.003G177500 I 0.000
Gorai.004G193200 Gossypium raimondii Gorai.004G193200 I 0.000
Gorai.006G214400 Gossypium raimondii Gorai.006G214400 I 0.000
Gorai.008G231500 Gossypium raimondii Gorai.008G231500 I 0.000
GSMUA_Achr11G17690_001 Musa acuminata GSMUA_Achr11G17690_001 I 0.000
GSMUA_Achr11G23110_001 Musa acuminata GSMUA_Achr11G23110_001 I 0.000
GSMUA_Achr2G18310_001 Musa acuminata GSMUA_Achr2G18310_001 I 0.000
GSMUA_Achr5G18290_001 Musa acuminata GSMUA_Achr5G18290_001 I 0.000
GSMUA_Achr8G15000_001 Musa acuminata GSMUA_Achr8G15000_001 I 0.000
LjSGA_060304.1 Lotus japonicus LjSGA_060304.1 I 0.000
Lus10000587.g Linum usitatissimum Lus10000587.g I 0.000
Lus10011008.g Linum usitatissimum Lus10011008.g I 0.000
Lus10011010.g Linum usitatissimum Lus10011010.g I 0.000
MDP0000129092 Malus domestica MDP0000129092 I 0.000
mgf015364m Mimulus guttatus mgf015364m I 0.000
mgf016271m Mimulus guttatus mgf016271m I 0.000
mgf024972m Mimulus guttatus mgf024972m I 0.000
MLOC_15510 Hordeum vulgare MLOC_15510 I 0.000
orange1.1g009155m.g Citrus sinensis orange1.1g009155m.g I 0.000
PGSC0003DMG400023781 Solanum tuberosum PGSC0003DMG400023781 I 0.000
PK11095.1 Cannabis sativa PK11095.1 I 0.000
POPTR_0001s15170 Populus trichocarpa POPTR_0001s15170 I 0.000
POPTR_0003s08080 Populus trichocarpa POPTR_0003s08080 I 0.000
SapurV1A.0107s0250 Salix purpurea SapurV1A.0107s0250 I 0.000
SapurV1A.0201s0160 Salix purpurea SapurV1A.0201s0160 I 0.000
TCM_015870 Theobroma cacao TCM_015870 I 0.000
Thhalv10000871m.g Eutrema salsugineum Thhalv10000871m.g I 0.000
Thhalv10024940m.g Eutrema salsugineum Thhalv10024940m.g I 0.000
Traes_2AL_01E6C08C0 Triticum aestivum Traes_2AL_01E6C08C0 I 0.000
Traes_2BL_4575D095D Triticum aestivum Traes_2BL_4575D095D I 0.000
Traes_2DL_C46B73FA3 Triticum aestivum Traes_2DL_C46B73FA3 I 0.000