PGSC0003DMG400023781 (Solanum tuberosum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 PGSC0003DMG400023781 T194715_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA26
M02001_2.00 		Arabidopsis thaliana
NNKATBNNNN
NNNNVATMNN		 PBM
Weirauch et al.(2014)
pTH7490 		0.831 0.722
GATA27
M02005_2.00 		Arabidopsis thaliana
NNGATBNNN
NNNVATCNN		 PBM
Weirauch et al.(2014)
pTH7492 		0.831 0.694
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400061125 GATA 165 200

Links

Other GATA family TFs
Other Solanum tuberosum TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_2AL_01E6C08C0 Triticum aestivum Traes_2AL_01E6C08C0 I 0.842
Traes_2BL_4575D095D Triticum aestivum Traes_2BL_4575D095D I 0.842
estExt_fgenesh1_pg.C_1220019 Physcomitrella patens estExt_fgenesh1_pg.C_1220019 I 0.836
estExt_fgenesh1_pg.C_4100005 Physcomitrella patens estExt_fgenesh1_pg.C_4100005 I 0.836
Aquca_082_00024 Aquilegia coerulea Aquca_082_00024 I 0.836
GATA26 Arabidopsis thaliana AT4G17570 D 0.831
GATA27 Arabidopsis thaliana AT5G47140 D 0.831
Bo1g017650 Brassica oleracea Bo1g017650 I 0.831
Bo2g132210 Brassica oleracea Bo2g132210 I 0.831
Bo7g077300 Brassica oleracea Bo7g077300 I 0.831
Bo8g049560 Brassica oleracea Bo8g049560 I 0.831
Bo9g069320 Brassica oleracea Bo9g069320 I 0.831
Bra017501 Brassica rapa Bra017501 I 0.831
Bra021041 Brassica rapa Bra021041 I 0.831
Bra022107 Brassica rapa Bra022107 I 0.831
Bra024961 Brassica rapa Bra024961 I 0.831
Bra040167 Brassica rapa Bra040167 I 0.831
BRADI5G17370 Brachypodium distachyon BRADI5G17370 I 0.831
GATA27 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8000066 I 0.831
GATA26 Arabidopsis lyrata fgenesh2_kg.7__2553__AT4G17570.1 I 0.831
GLYMA01G41370 Glycine max GLYMA01G41370 I 0.831
GLYMA05G05320 Glycine max GLYMA05G05320 I 0.831
GLYMA11G04060 Glycine max GLYMA11G04060 I 0.831
GLYMA17G15610 Glycine max GLYMA17G15610 I 0.831
GSMUA_Achr11G17690_001 Musa acuminata GSMUA_Achr11G17690_001 I 0.831
GSMUA_Achr11G23110_001 Musa acuminata GSMUA_Achr11G23110_001 I 0.831
GSMUA_Achr2G18310_001 Musa acuminata GSMUA_Achr2G18310_001 I 0.831
GSMUA_Achr5G18290_001 Musa acuminata GSMUA_Achr5G18290_001 I 0.831
GSMUA_Achr8G15000_001 Musa acuminata GSMUA_Achr8G15000_001 I 0.831
MLOC_15510 Hordeum vulgare MLOC_15510 I 0.831
POPTR_0001s15170 Populus trichocarpa POPTR_0001s15170 I 0.831
POPTR_0003s08080 Populus trichocarpa POPTR_0003s08080 I 0.831
TCM_015870 Theobroma cacao TCM_015870 I 0.831
Traes_2DL_C46B73FA3 Triticum aestivum Traes_2DL_C46B73FA3 I 0.831
Ca_02313 Cicer arietinum Ca_02313 I 0.831
27940.m000323 Ricinus communis 27940.m000323 I 0.831
cassava42719.valid.m1 Manihot esculenta cassava42719.valid.m1 I 0.831
mgf015364m Mimulus guttatus mgf015364m I 0.831
mgf016271m Mimulus guttatus mgf016271m I 0.831
mgf024972m Mimulus guttatus mgf024972m I 0.831
Aquca_053_00062 Aquilegia coerulea Aquca_053_00062 I 0.831
Bostr.28243s0001 Boechera stricta Bostr.28243s0001 I 0.831
Bostr.30275s0218 Boechera stricta Bostr.30275s0218 I 0.831
Cagra.3356s0048 Capsella grandiflora Cagra.3356s0048 I 0.831
Cagra.3675s0017 Capsella grandiflora Cagra.3675s0017 I 0.831
Carubv10007115m.g Capsella rubella Carubv10007115m.g I 0.831
Carubv10026597m.g Capsella rubella Carubv10026597m.g I 0.831
Ciclev10019614m.g Citrus clementina Ciclev10019614m.g I 0.831
Eucgr.D02129 Eucalyptus grandis Eucgr.D02129 I 0.831
Eucgr.E00364 Eucalyptus grandis Eucgr.E00364 I 0.831
Gorai.003G177500 Gossypium raimondii Gorai.003G177500 I 0.831
Gorai.004G193200 Gossypium raimondii Gorai.004G193200 I 0.831
Gorai.006G214400 Gossypium raimondii Gorai.006G214400 I 0.831
Gorai.008G231500 Gossypium raimondii Gorai.008G231500 I 0.831
Lus10011008.g Linum usitatissimum Lus10011008.g I 0.831
Lus10011010.g Linum usitatissimum Lus10011010.g I 0.831
orange1.1g009155m.g Citrus sinensis orange1.1g009155m.g I 0.831
SapurV1A.0107s0250 Salix purpurea SapurV1A.0107s0250 I 0.831
SapurV1A.0201s0160 Salix purpurea SapurV1A.0201s0160 I 0.831
Thhalv10000871m.g Eutrema salsugineum Thhalv10000871m.g I 0.831
Thhalv10024940m.g Eutrema salsugineum Thhalv10024940m.g I 0.831
PK11095.1 Cannabis sativa PK11095.1 I 0.831