cassava42719.valid.m1 (Manihot esculenta)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 cassava42719.valid.m1 T196036_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA26
M02001_2.00 		Arabidopsis thaliana
NNKATBNNNN
NNNNVATMNN		 PBM
Weirauch et al.(2014)
pTH7490 		0.867 0.944
GATA27
M02005_2.00 		Arabidopsis thaliana
NNGATBNNN
NNNVATCNN		 PBM
Weirauch et al.(2014)
pTH7492 		0.867 0.944
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava42719.valid.m1 GATA 7 42

Links

Other GATA family TFs
Other Manihot esculenta TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GATA26 Arabidopsis thaliana AT4G17570 D 0.867
GATA27 Arabidopsis thaliana AT5G47140 D 0.867
Bo1g017650 Brassica oleracea Bo1g017650 I 0.867
Bo2g132210 Brassica oleracea Bo2g132210 I 0.867
Bo7g077300 Brassica oleracea Bo7g077300 I 0.867
Bo8g049560 Brassica oleracea Bo8g049560 I 0.867
Bo9g069320 Brassica oleracea Bo9g069320 I 0.867
Bra017501 Brassica rapa Bra017501 I 0.867
Bra021041 Brassica rapa Bra021041 I 0.867
Bra022107 Brassica rapa Bra022107 I 0.867
Bra024961 Brassica rapa Bra024961 I 0.867
Bra040167 Brassica rapa Bra040167 I 0.867
GATA27 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8000066 I 0.867
GATA26 Arabidopsis lyrata fgenesh2_kg.7__2553__AT4G17570.1 I 0.867
GLYMA01G41370 Glycine max GLYMA01G41370 I 0.867
GLYMA05G05320 Glycine max GLYMA05G05320 I 0.867
GLYMA11G04060 Glycine max GLYMA11G04060 I 0.867
GLYMA17G15610 Glycine max GLYMA17G15610 I 0.867
GSMUA_Achr11G17690_001 Musa acuminata GSMUA_Achr11G17690_001 I 0.867
GSMUA_Achr2G18310_001 Musa acuminata GSMUA_Achr2G18310_001 I 0.867
GSMUA_Achr5G18290_001 Musa acuminata GSMUA_Achr5G18290_001 I 0.867
GSMUA_Achr8G15000_001 Musa acuminata GSMUA_Achr8G15000_001 I 0.867
POPTR_0001s15170 Populus trichocarpa POPTR_0001s15170 I 0.867
POPTR_0003s08080 Populus trichocarpa POPTR_0003s08080 I 0.867
TCM_015870 Theobroma cacao TCM_015870 I 0.867
Traes_2DL_C46B73FA3 Triticum aestivum Traes_2DL_C46B73FA3 I 0.867
Ca_02313 Cicer arietinum Ca_02313 I 0.867
27940.m000323 Ricinus communis 27940.m000323 I 0.867
mgf015364m Mimulus guttatus mgf015364m I 0.867
mgf016271m Mimulus guttatus mgf016271m I 0.867
mgf024972m Mimulus guttatus mgf024972m I 0.867
Aquca_053_00062 Aquilegia coerulea Aquca_053_00062 I 0.867
Bostr.28243s0001 Boechera stricta Bostr.28243s0001 I 0.867
Bostr.30275s0218 Boechera stricta Bostr.30275s0218 I 0.867
Cagra.3356s0048 Capsella grandiflora Cagra.3356s0048 I 0.867
Cagra.3675s0017 Capsella grandiflora Cagra.3675s0017 I 0.867
Carubv10007115m.g Capsella rubella Carubv10007115m.g I 0.867
Carubv10026597m.g Capsella rubella Carubv10026597m.g I 0.867
Ciclev10019614m.g Citrus clementina Ciclev10019614m.g I 0.867
Eucgr.D02129 Eucalyptus grandis Eucgr.D02129 I 0.867
Eucgr.E00364 Eucalyptus grandis Eucgr.E00364 I 0.867
Gorai.003G177500 Gossypium raimondii Gorai.003G177500 I 0.867
Gorai.004G193200 Gossypium raimondii Gorai.004G193200 I 0.867
Gorai.006G214400 Gossypium raimondii Gorai.006G214400 I 0.867
Gorai.008G231500 Gossypium raimondii Gorai.008G231500 I 0.867
Lus10011008.g Linum usitatissimum Lus10011008.g I 0.867
Lus10011010.g Linum usitatissimum Lus10011010.g I 0.867
orange1.1g009155m.g Citrus sinensis orange1.1g009155m.g I 0.867
SapurV1A.0107s0250 Salix purpurea SapurV1A.0107s0250 I 0.867
SapurV1A.0201s0160 Salix purpurea SapurV1A.0201s0160 I 0.867
Thhalv10000871m.g Eutrema salsugineum Thhalv10000871m.g I 0.867
Thhalv10024940m.g Eutrema salsugineum Thhalv10024940m.g I 0.867
PK11095.1 Cannabis sativa PK11095.1 I 0.867
Aquca_082_00024 Aquilegia coerulea Aquca_082_00024 I 0.862
estExt_fgenesh1_pg.C_1220019 Physcomitrella patens estExt_fgenesh1_pg.C_1220019 I 0.857
estExt_fgenesh1_pg.C_4100005 Physcomitrella patens estExt_fgenesh1_pg.C_4100005 I 0.857
BRADI5G17370 Brachypodium distachyon BRADI5G17370 I 0.856
GSMUA_Achr11G23110_001 Musa acuminata GSMUA_Achr11G23110_001 I 0.856
MLOC_15510 Hordeum vulgare MLOC_15510 I 0.856
Traes_2AL_01E6C08C0 Triticum aestivum Traes_2AL_01E6C08C0 I 0.856
Traes_2BL_4575D095D Triticum aestivum Traes_2BL_4575D095D I 0.856
Bra017500 Brassica rapa Bra017500 I 0.831
PGSC0003DMG400023781 Solanum tuberosum PGSC0003DMG400023781 I 0.831
F775_19309 Aegilops tauschii F775_19309 I 0.827
evm.TU.supercontig_74.95 Carica papaya evm.TU.supercontig_74.95 I 0.827
Lus10000587.g Linum usitatissimum Lus10000587.g I 0.827
LjSGA_060304.1 Lotus japonicus LjSGA_060304.1 I 0.827
AMTR_s00008p00092930 Amborella trichopoda AMTR_s00008p00092930 I 0.816
MDP0000129092 Malus domestica MDP0000129092 I 0.816