AP3 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT3G54340 T252883_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AP3
M08146_2.00		 Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1		 (Direct) (Direct)
AP3
M10919_2.00		 Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.875 0.875
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.812 0.812
MADS16
M10971_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS16_01 		0.771 0.771
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.729 0.729
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.729 0.729
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.729 0.729
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.708 0.708
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.708 0.708
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.708 0.708
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.708 0.708
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.708 0.708
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.708 0.708
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.708 0.708
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.708 0.708
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.708 0.708
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.708 0.708
MLOC_61901
M10964_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM8_01 		0.708 0.708
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.708 0.708
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.708 0.708
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.708 0.708
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.708 0.708
MADS15
M10972_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_01 		0.708 0.708
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.708 0.708
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.708 0.708
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.708 0.708
Q9FR84_MAIZE
M10981_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_03 		0.708 0.708
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.708 0.708
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.708 0.708
Q41829_MAIZE
M10977_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ZAP1_02 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G54340.1 MADS box 10 57

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

389 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R008874 Calypte anna Aan_R008874 I 0.000
Afo_R002341 Aptenodytes forsteri Afo_R002341 I 0.000
Cmyd_10013542 Chelonia mydas Cmyd_10013542 I 0.000
ENSAMEG00000016587 Ailuropoda melanoleuca ENSAMEG00000016587 I 0.000
ENSAPLG00000010304 Anas platyrhynchos ENSAPLG00000010304 I 0.000
MGA Bos taurus ENSBTAG00000015138 I 0.000
MGA Canis familiaris ENSCAFG00000009662 I 0.000
MGA Choloepus hoffmanni ENSCHOG00000012044 I 0.000
MGA Callithrix jacchus ENSCJAG00000020688 I 0.000
ENSCSAG00000007832 Chlorocebus sabaeus ENSCSAG00000007832 I 0.000
MGA Equus caballus ENSECAG00000006544 I 0.000
MGA Erinaceus europaeus ENSEEUG00000004604 I 0.000
ENSFALG00000006030 Ficedula albicollis ENSFALG00000006030 I 0.000
MGA Felis catus ENSFCAG00000007347 I 0.000
MGA Homo sapiens ENSG00000174197 D 0.000
ENSGALG00000008653 Gallus gallus ENSGALG00000008653 I 0.000
MGA Gorilla gorilla ENSGGOG00000001640 I 0.000
ENSLACG00000002619 Latimeria chalumnae ENSLACG00000002619 I 0.000
ENSLOCG00000011689 Lepisosteus oculatus ENSLOCG00000011689 I 0.000
MGA Meleagris gallopavo ENSMGAG00000011293 I 0.000
MGA Microcebus murinus ENSMICG00000001788 I 0.000
MGA Myotis lucifugus ENSMLUG00000015227 I 0.000
MGA Monodelphis domestica ENSMODG00000000052 I 0.000
ENSMPUG00000008968 Mustela putorius furo ENSMPUG00000008968 I 0.000
Mga Mus musculus ENSMUSG00000033943 I 0.000
ENSNLEG00000003750 Nomascus leucogenys ENSNLEG00000003750 I 0.000
MGA Ornithorhynchus anatinus ENSOANG00000004502 I 0.000
ENSOARG00000020404 Ovis aries ENSOARG00000020404 I 0.000
MGA Oryctolagus cuniculus ENSOCUG00000006505 I 0.000
MGA Otolemur garnettii ENSOGAG00000016028 I 0.000
ENSP00000219905 Macaca fascicularis ENSP00000219905 I 0.000
ENSP00000219905-D1 Bos grunniens ENSP00000219905-D1 I 0.000
MGA Procavia capensis ENSPCAG00000013131 I 0.000
ENSPPYG00000006380 Pongo abelii ENSPPYG00000006380 I 0.000
MGA Pan troglodytes ENSPTRG00000006953 I 0.000
MGA Pteropus vampyrus ENSPVAG00000013732 I 0.000
Mga Rattus norvegicus ENSRNOG00000006378 I 0.000
MGA Sorex araneus ENSSARG00000007043 I 0.000
ENSSTOG00000000653 Ictidomys tridecemlineatus ENSSTOG00000000653 I 0.000
MGA Tupaia belangeri ENSTBEG00000002010 I 0.000
ENSTSYG00000014605 Tarsius syrichta ENSTSYG00000014605 I 0.000
MGA Tursiops truncatus ENSTTRG00000002514 I 0.000
MGA Vicugna pacos ENSVPAG00000006239 I 0.000
Myotis_brandtii_MGA_10023843 Myotis brandtii Myotis_brandtii_MGA_10023843 I 0.000
Ogr06446 Ophisaurus gracilis Ogr06446 I 0.000
Pvit_03503 Pogona vitticeps Pvit_03503 I 0.000
XP_002933783 Xenopus tropicalis XP_002933783 I 0.000