CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pvit_03503
(
Pogona vitticeps
)
bHLH,T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
PF00907 (T-box)
IPR001092
IPR001699
Pvit_03503
T055494_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MGA
M02821_2.00
Homo sapiens
RGGTGTGA
TCACACCY
SELEX
Jolma et al.(2013)
MGA_1
0.880
0.880
MGA
M02822_2.00
Homo sapiens
AGGTGTKAHDTMACACCT
AGGTGTKAHDTMACACCT
SELEX
Jolma et al.(2013)
MGA_2
0.880
0.880
MGA
M02823_2.00
Homo sapiens
VGTGTKAWWWTTCACRCB
VGYGTGAAWWWTMACACB
SELEX
Jolma et al.(2013)
MGA_3
0.880
0.880
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pvit_03503
T-box
87
270
VTLDNNNMWNEFYHRSTEMILTKQGRRMFPYCRYWIAGLESNLKYILVMDISPVDNFRYKWNGHSWEPSGKAEPHVLGRVFIHPESPSTGYYWMHQPVSFYKLKLTNNTLDQEGHIILHSMHRYLPRLHLIPADKATDVIQLNGPDVHTFTFSQTEFFAVTAYQNIQITQLKIDYNPFAKGFRE
Pvit_03503
bHLH
2374
2425
YRQTHTANERRRRKEMRGLFEKLKATLKLDSLPKVSKCFILKQALEEIQGLT
Links
Other
bHLH,T-box
family TFs
Other
Pogona vitticeps
TFs
46 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ogr06446
Ophisaurus gracilis
Ogr06446
I
0.936
Cmyd_10013542
Chelonia mydas
Cmyd_10013542
I
0.919
ENSGALG00000008653
Gallus gallus
ENSGALG00000008653
I
0.902
Afo_R002341
Aptenodytes forsteri
Afo_R002341
I
0.902
Gfo_R014126
Geospiza fortis
Gfo_R014126
I
0.897
ENSFALG00000006030
Ficedula albicollis
ENSFALG00000006030
I
0.897
MGA
Meleagris gallopavo
ENSMGAG00000011293
I
0.893
MGA
Microcebus murinus
ENSMICG00000001788
I
0.889
MGA
Bos taurus
ENSBTAG00000015138
I
0.885
MGA
Otolemur garnettii
ENSOGAG00000016028
I
0.885
MGA
Ornithorhynchus anatinus
ENSOANG00000004502
I
0.885
ENSP00000219905-D1
Bos grunniens
ENSP00000219905-D1
I
0.885
MGA
Vicugna pacos
ENSVPAG00000006239
I
0.885
MGA
Pan troglodytes
ENSPTRG00000006953
I
0.880
ENSPPYG00000006380
Pongo abelii
ENSPPYG00000006380
I
0.880
ENSOARG00000020404
Ovis aries
ENSOARG00000020404
I
0.880
MGA
Tursiops truncatus
ENSTTRG00000002514
I
0.880
ENSP00000219905
Macaca fascicularis
ENSP00000219905
I
0.880
ENSTSYG00000014605
Tarsius syrichta
ENSTSYG00000014605
I
0.880
MGA
Tupaia belangeri
ENSTBEG00000002010
I
0.880
MGA
Sorex araneus
ENSSARG00000007043
I
0.880
MGA
Pteropus vampyrus
ENSPVAG00000013732
I
0.880
ENSNLEG00000003750
Nomascus leucogenys
ENSNLEG00000003750
I
0.880
MGA
Equus caballus
ENSECAG00000006544
I
0.880
MGA
Felis catus
ENSFCAG00000007347
I
0.880
MGA
Homo sapiens
ENSG00000174197
D
0.880
ENSCSAG00000007832
Chlorocebus sabaeus
ENSCSAG00000007832
I
0.880
MGA
Callithrix jacchus
ENSCJAG00000020688
I
0.880
ENSAPLG00000010304
Anas platyrhynchos
ENSAPLG00000010304
I
0.880
MGA
Canis familiaris
ENSCAFG00000009662
I
0.880
MGA
Choloepus hoffmanni
ENSCHOG00000012044
I
0.880
ENSAMEG00000016587
Ailuropoda melanoleuca
ENSAMEG00000016587
I
0.880
MGA
Gorilla gorilla
ENSGGOG00000001640
I
0.880
ENSMPUG00000008968
Mustela putorius furo
ENSMPUG00000008968
I
0.880
MGA
Myotis lucifugus
ENSMLUG00000015227
I
0.880
ENSSTOG00000000653
Ictidomys tridecemlineatus
ENSSTOG00000000653
I
0.876
MGA
Oryctolagus cuniculus
ENSOCUG00000006505
I
0.876
Aan_R008874
Calypte anna
Aan_R008874
I
0.876
MGA
Erinaceus europaeus
ENSEEUG00000004604
I
0.876
Mga
Rattus norvegicus
ENSRNOG00000006378
I
0.868
Mga
Mus musculus
ENSMUSG00000033943
I
0.868
ENSLACG00000002619
Latimeria chalumnae
ENSLACG00000002619
I
0.855
MGA
Procavia capensis
ENSPCAG00000013131
I
0.850
MGA
Monodelphis domestica
ENSMODG00000000052
I
0.842
XP_002933783
Xenopus tropicalis
XP_002933783
I
0.833
ENSLOCG00000011689
Lepisosteus oculatus
ENSLOCG00000011689
I
0.782