Bo5g145000 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo5g145000 T253129_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.778 0.778
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g145000.1 MADS box 10 55

Links

Other MADS box family TFs
Other Brassica oleracea TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava2445.valid.m1 Manihot esculenta cassava2445.valid.m1 N
Eucgr.H01651 Eucalyptus grandis Eucgr.H01651 N
Eucgr.H02009 Eucalyptus grandis Eucgr.H02009 N
evm.TU.supercontig_55.163 Carica papaya evm.TU.supercontig_55.163 N
gene24052-v1.0-hybrid Fragaria vesca gene24052-v1.0-hybrid N
GLYMA17G20175 Glycine max GLYMA17G20175 N
Gorai.007G212100 Gossypium raimondii Gorai.007G212100 N
MDP0000258417 Malus domestica MDP0000258417 N
MDP0000314333 Malus domestica MDP0000314333 N
PGSC0003DMG400015771 Solanum tuberosum PGSC0003DMG400015771 N
PK03938.1 Cannabis sativa PK03938.1 N
Solyc02g090710.2 Solanum lycopersicum Solyc02g090710.2 N
TCM_000597 Theobroma cacao TCM_000597 N