Bra015645 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra015645 T253284_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL67
M10907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT1G77950_01 		0.917 0.917
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra015645.1-P MADS box 10 57

Links

Other MADS box family TFs
Other Brassica rapa TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL104 Arabidopsis lyrata Al_scaffold_0001_2320 I 0.729
AMTR_s00010p00214260 Amborella trichopoda AMTR_s00010p00214260 I 0.708
AGL104 Arabidopsis thaliana AT1G22130 I 0.729
AGL67 Arabidopsis thaliana AT1G77950 D 0.917
AGL66 Arabidopsis thaliana AT1G77980 I 0.750
BGIOSGA026745 Oryza indica BGIOSGA026745 I 0.708
Bo6g121610 Brassica oleracea Bo6g121610 I 0.958
Bo6g121640 Brassica oleracea Bo6g121640 I 0.750
Bo7g060150 Brassica oleracea Bo7g060150 I 0.729
Bo8g071330 Brassica oleracea Bo8g071330 I 0.729
Bostr.20129s0232 Boechera stricta Bostr.20129s0232 I 0.729
Bra012308 Brassica rapa Bra012308 I 0.729
Bra015643 Brassica rapa Bra015643 I 0.750
Bra016386 Brassica rapa Bra016386 I 0.729
BRADI3G39177 Brachypodium distachyon BRADI3G39177 I 0.708
Cagra.0096s0037 Capsella grandiflora Cagra.0096s0037 I 0.750
Cagra.0096s0039 Capsella grandiflora Cagra.0096s0039 I 0.917
Cagra.1707s0007 Capsella grandiflora Cagra.1707s0007 I 0.729
Carubv10010907m.g Capsella rubella Carubv10010907m.g I 0.729
Carubv10021590m.g Capsella rubella Carubv10021590m.g I 0.750
Carubv10021761m.g Capsella rubella Carubv10021761m.g I 0.917
estExt_Genewise1.C_80073 Physcomitrella patens estExt_Genewise1.C_80073 I 0.708
F775_03584 Aegilops tauschii F775_03584 I 0.708
fgenesh2_kg.2__2089__AT1G77950.1 Arabidopsis lyrata fgenesh2_kg.2__2089__AT1G77950.1 I 0.896
AGL66 Arabidopsis lyrata fgenesh2_kg.2__2091__AT1G77980.1 I 0.750
fgenesh2_kg.2__2429__AT1G77950.2 Arabidopsis lyrata fgenesh2_kg.2__2429__AT1G77950.2 I 0.896
H311_00382 Anncaliia algerae H311_00382 I 0.704
LPERR06G07270 Leersia perrieri LPERR06G07270 I 0.729
LPERR08G16000 Leersia perrieri LPERR08G16000 I 0.708
OB06G17440 Oryza brachyantha OB06G17440 I 0.729
OB08G26170 Oryza brachyantha OB08G26170 I 0.708
OBART08G19110 Oryza barthii OBART08G19110 I 0.708
OGLUM08G20110 Oryza glumaepatula OGLUM08G20110 I 0.708
OLONG_004474 Oryza longistaminata OLONG_004474 I 0.729
OPUNC06G07570 Oryza punctata OPUNC06G07570 I 0.708
ORGLA08G0167200 Oryza glaberrima ORGLA08G0167200 I 0.708
ORUFI08G21330 Oryza rufipogon ORUFI08G21330 I 0.708
OS08G0494100 Oryza sativa OS08G0494100 I 0.708
Pavir.Fb01739 Panicum virgatum Pavir.Fb01739 I 0.708
Pavir.J32837 Panicum virgatum Pavir.J32837 I 0.708
Pm005355 Prunus mume Pm005355 I 0.708
PRUPE_ppa023054mg Prunus persica PRUPE_ppa023054mg I 0.729
Si008439m.g Setaria italica Si008439m.g I 0.708
Si013985m.g Setaria italica Si013985m.g I 0.708
Thhalv10019686m.g Eutrema salsugineum Thhalv10019686m.g I 0.750
Thhalv10019795m.g Eutrema salsugineum Thhalv10019795m.g I 0.896
Traes_4DS_A28BC582A Triticum aestivum Traes_4DS_A28BC582A I 0.708
TRIUR3_20588 Triticum urartu TRIUR3_20588 I 0.708