estExt_Genewise1.C_80073 (Physcomitrella patens)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 estExt_Genewise1.C_80073 T257338_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL1
M02694_2.00 		Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN
NDTWCCHNWWWWGGHAHN		 SELEX
Mathelier et al.(2014)
MA0585.1 		0.708 0.708
AGL1
M10920_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_01 		0.708 0.708
AGL1
M10921_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_02 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
SHP2
M10914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SHP2_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_80073 MADS box 10 57

Links

Other MADS box family TFs
Other Physcomitrella patens TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
e_gw1.55.5.1 Physcomitrella patens e_gw1.55.5.1 I 0.958
fgenesh1_pg.scaffold_163000049 Physcomitrella patens fgenesh1_pg.scaffold_163000049 I 0.958
estExt_fgenesh1_pg.C_1180093 Physcomitrella patens estExt_fgenesh1_pg.C_1180093 I 0.958
estExt_gwp_gw1.C_900087 Physcomitrella patens estExt_gwp_gw1.C_900087 I 0.938
estExt_fgenesh1_pm.C_80015 Physcomitrella patens estExt_fgenesh1_pm.C_80015 I 0.938
estExt_fgenesh1_kg.C_550007 Physcomitrella patens estExt_fgenesh1_kg.C_550007 I 0.938
estExt_gwp_gw1.C_1630046 Physcomitrella patens estExt_gwp_gw1.C_1630046 I 0.917
e_gw1.273.6.1 Physcomitrella patens e_gw1.273.6.1 I 0.917
estExt_gwp_gw1.C_340302 Physcomitrella patens estExt_gwp_gw1.C_340302 I 0.917
SELMODRAFT_449720 Selaginella moellendorffii SELMODRAFT_449720 N 0.875
SELMODRAFT_449721 Selaginella moellendorffii SELMODRAFT_449721 N 0.875
Cla014721 Citrullus lanatus Cla014721 I 0.812
OPUNC08G17110 Oryza punctata OPUNC08G17110 I 0.812
PRUPE_ppa023054mg Prunus persica PRUPE_ppa023054mg I 0.812
AMTR_s00010p00214260 Amborella trichopoda AMTR_s00010p00214260 I 0.812
OB08G26170 Oryza brachyantha OB08G26170 I 0.792
LPERR08G16000 Leersia perrieri LPERR08G16000 I 0.792
ORGLA08G0167200 Oryza glaberrima ORGLA08G0167200 I 0.792
GSMUA_Achr3G04450_001 Musa acuminata GSMUA_Achr3G04450_001 I 0.792
ORUFI08G21330 Oryza rufipogon ORUFI08G21330 I 0.792
OGLUM08G20110 Oryza glumaepatula OGLUM08G20110 I 0.792
LPERR06G07270 Leersia perrieri LPERR06G07270 I 0.792
OLONG_004474 Oryza longistaminata OLONG_004474 I 0.792
OBART08G19110 Oryza barthii OBART08G19110 I 0.792
Pm005355 Prunus mume Pm005355 I 0.792
Pavir.Fb01739 Panicum virgatum Pavir.Fb01739 I 0.792
Pavir.J32837 Panicum virgatum Pavir.J32837 I 0.792
SapurV1A.0010s0340 Salix purpurea SapurV1A.0010s0340 I 0.792
Aquca_014_00554 Aquilegia coerulea Aquca_014_00554 I 0.792
cassava32041.m1 Manihot esculenta cassava32041.m1 I 0.792
POPTR_0002s09290 Populus trichocarpa POPTR_0002s09290 I 0.792
Ca_01572 Cicer arietinum Ca_01572 I 0.792
GLYMA04G04641 Glycine max GLYMA04G04641 I 0.792
OS08G0494100 Oryza sativa OS08G0494100 I 0.792
Si013985m.g Setaria italica Si013985m.g I 0.792
BGIOSGA026745 Oryza indica BGIOSGA026745 I 0.792
OPUNC06G07570 Oryza punctata OPUNC06G07570 I 0.771
ONIVA08G21050 Oryza nivara ONIVA08G21050 I 0.771
ORGLA06G0074200 Oryza glaberrima ORGLA06G0074200 I 0.771
mgf017317m Mimulus guttatus mgf017317m I 0.771
BGIOSGA003731 Oryza indica BGIOSGA003731 I 0.771
ORUFI06G08110 Oryza rufipogon ORUFI06G08110 I 0.771
Cagra.1707s0007 Capsella grandiflora Cagra.1707s0007 I 0.771
Carubv10010907m.g Capsella rubella Carubv10010907m.g I 0.771
gene31290-v1.0-hybrid Fragaria vesca gene31290-v1.0-hybrid I 0.771
OBART06G07860 Oryza barthii OBART06G07860 I 0.771
evm.TU.supercontig_21.133 Carica papaya evm.TU.supercontig_21.133 I 0.771
OGLUM06G08350 Oryza glumaepatula OGLUM06G08350 I 0.771
Ciclev10003964m.g Citrus clementina Ciclev10003964m.g I 0.771
OS06G0223300 Oryza sativa OS06G0223300 I 0.771
Gorai.005G100600 Gossypium raimondii Gorai.005G100600 I 0.771
TCM_001182 Theobroma cacao TCM_001182 I 0.771
Pm019181 Prunus mume Pm019181 I 0.771
TCM_034970 Theobroma cacao TCM_034970 I 0.771
Ca_24539 Cicer arietinum Ca_24539 I 0.771
VIT_18s0001g09540 Vitis vinifera VIT_18s0001g09540 I 0.771
Solyc04g078300.2 Solanum lycopersicum Solyc04g078300.2 I 0.771
29908.m005982 Ricinus communis 29908.m005982 I 0.771
cassava25616.m1 Manihot esculenta cassava25616.m1 I 0.771
PRUPE_ppa007816mg Prunus persica PRUPE_ppa007816mg I 0.771
Sb10g007810 Sorghum bicolor Sb10g007810 I 0.771
Si008439m.g Setaria italica Si008439m.g I 0.771
30170.m013776 Ricinus communis 30170.m013776 I 0.771
VIT_07s0031g01140 Vitis vinifera VIT_07s0031g01140 I 0.771
ONIVA06G09080 Oryza nivara ONIVA06G09080 I 0.771
GRMZM2G334225 Zea mays GRMZM2G334225 I 0.771
GRMZM2G152415 Zea mays GRMZM2G152415 I 0.771
MDP0000243965 Malus domestica MDP0000243965 I 0.771
orange1.1g039560m.g Citrus sinensis orange1.1g039560m.g I 0.771
Pavir.Db01574 Panicum virgatum Pavir.Db01574 I 0.771
GSMUA_Achr9G13010_001 Musa acuminata GSMUA_Achr9G13010_001 I 0.771
GLYMA14G34160 Glycine max GLYMA14G34160 I 0.771
MTR_3g102570 Medicago truncatula MTR_3g102570 I 0.771
OB06G17440 Oryza brachyantha OB06G17440 I 0.771
Gorai.009G216900 Gossypium raimondii Gorai.009G216900 I 0.771
Lus10018714.g Linum usitatissimum Lus10018714.g I 0.771
SELMODRAFT_449788 Selaginella moellendorffii SELMODRAFT_449788 I 0.766
SELMODRAFT_451128 Selaginella moellendorffii SELMODRAFT_451128 I 0.766
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.760
AGL104 Arabidopsis thaliana AT1G22130 I 0.750
Bra015643 Brassica rapa Bra015643 I 0.750
Bo8g071330 Brassica oleracea Bo8g071330 I 0.750
Bo6g121640 Brassica oleracea Bo6g121640 I 0.750
Cucsa.392160 Cucumis sativus Cucsa.392160 I 0.750
Bo7g060150 Brassica oleracea Bo7g060150 I 0.750
POPTR_0007s05980 Populus trichocarpa POPTR_0007s05980 I 0.750
SapurV1A.0293s0130 Salix purpurea SapurV1A.0293s0130 I 0.750
GLYMA13G02170 Glycine max GLYMA13G02170 I 0.750
Thhalv10019686m.g Eutrema salsugineum Thhalv10019686m.g I 0.750
PK10594.1 Cannabis sativa PK10594.1 I 0.750
AGL104 Arabidopsis lyrata Al_scaffold_0001_2320 I 0.750
Bra016386 Brassica rapa Bra016386 I 0.750
Cla002664 Citrullus lanatus Cla002664 I 0.750
Bra012308 Brassica rapa Bra012308 I 0.750
cassava22012.m1 Manihot esculenta cassava22012.m1 I 0.750
Traes_4DS_A28BC582A Triticum aestivum Traes_4DS_A28BC582A I 0.750
AGL66 Arabidopsis thaliana AT1G77980 I 0.750
TRIUR3_20588 Triticum urartu TRIUR3_20588 I 0.750
Bostr.20129s0232 Boechera stricta Bostr.20129s0232 I 0.750
Ciclev10001730m.g Citrus clementina Ciclev10001730m.g I 0.750
Cagra.0096s0037 Capsella grandiflora Cagra.0096s0037 I 0.750
OMERI08G15140 Oryza meridionalis OMERI08G15140 I 0.750
BRADI3G39177 Brachypodium distachyon BRADI3G39177 I 0.750
OMERI06G09450 Oryza meridionalis OMERI06G09450 I 0.750
MTR_4g084740 Medicago truncatula MTR_4g084740 I 0.750
F775_03584 Aegilops tauschii F775_03584 I 0.750
Gorai.005G093000 Gossypium raimondii Gorai.005G093000 I 0.750
orange1.1g046530m.g Citrus sinensis orange1.1g046530m.g I 0.750
mgf006616m Mimulus guttatus mgf006616m I 0.750
AGL66 Arabidopsis lyrata fgenesh2_kg.2__2091__AT1G77980.1 I 0.750
Lus10016810.g Linum usitatissimum Lus10016810.g I 0.750
Lus10022506.g Linum usitatissimum Lus10022506.g I 0.750
Carubv10021590m.g Capsella rubella Carubv10021590m.g I 0.750
Solyc05g051830.2 Solanum lycopersicum Solyc05g051830.2 N 0.729
PK19764.1 Cannabis sativa PK19764.1 I 0.729
PK21701.1 Cannabis sativa PK21701.1 I 0.729
TCM_034757 Theobroma cacao TCM_034757 I 0.729
Lus10024823.g Linum usitatissimum Lus10024823.g I 0.729
PRUPE_ppa020874mg Prunus persica PRUPE_ppa020874mg I 0.729
mgf021705m Mimulus guttatus mgf021705m I 0.729
mgf019100m Mimulus guttatus mgf019100m N 0.729
GRMZM2G171365 Zea mays GRMZM2G171365 I 0.729
Bostr.12659s0064 Boechera stricta Bostr.12659s0064 I 0.729
Si038257m.g Setaria italica Si038257m.g I 0.729
Gorai.007G242000 Gossypium raimondii Gorai.007G242000 I 0.729
MDP0000152821 Malus domestica MDP0000152821 I 0.729
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.724
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.722
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.717
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.717
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.717
F775_13266 Aegilops tauschii F775_13266 I 0.717
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.717
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.717
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.717
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.714
OBART05G06600 Oryza barthii OBART05G06600 I 0.708
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.708
OGLUM03G01750 Oryza glumaepatula OGLUM03G01750 I 0.708
Gorai.007G043400 Gossypium raimondii Gorai.007G043400 I 0.708
OBART03G01800 Oryza barthii OBART03G01800 I 0.708
OB03G11760 Oryza brachyantha OB03G11760 I 0.708
OGLUM05G06900 Oryza glumaepatula OGLUM05G06900 I 0.708
SHP2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002019 I 0.708
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.708
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.708
Carubv10025002m.g Capsella rubella Carubv10025002m.g I 0.708
Carubv10021761m.g Capsella rubella Carubv10021761m.g I 0.708
OMERI03G01730 Oryza meridionalis OMERI03G01730 I 0.708
Carubv10019520m.g Capsella rubella Carubv10019520m.g I 0.708
OLONG_018464 Oryza longistaminata OLONG_018464 I 0.708
OLONG_010918 Oryza longistaminata OLONG_010918 I 0.708
evm.TU.supercontig_13.95 Carica papaya evm.TU.supercontig_13.95 I 0.708
MTR_3g452380 Medicago truncatula MTR_3g452380 I 0.708
Eucgr.I00556 Eucalyptus grandis Eucgr.I00556 I 0.708
Ciclev10032927m.g Citrus clementina Ciclev10032927m.g I 0.708
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.708
MLOC_5375 Hordeum vulgare MLOC_5375 I 0.708
GRMZM2G026223 Zea mays GRMZM2G026223 I 0.708
Thhalv10017047m.g Eutrema salsugineum Thhalv10017047m.g I 0.708
Thhalv10006196m.g Eutrema salsugineum Thhalv10006196m.g I 0.708
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.708
GLYMA18G12590 Glycine max GLYMA18G12590 I 0.708
GLYMA14G03100 Glycine max GLYMA14G03100 I 0.708
GLYMA08G42300 Glycine max GLYMA08G42300 I 0.708
LjT38P01.180.nd Lotus japonicus LjT38P01.180.nd I 0.708
chr2.CM0099.100.nc Lotus japonicus chr2.CM0099.100.nc I 0.708
GLYMA10G38580 Glycine max GLYMA10G38580 I 0.708
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.708
GRMZM2G359952 Zea mays GRMZM2G359952 I 0.708
GSMUA_Achr5G06590_001 Musa acuminata GSMUA_Achr5G06590_001 I 0.708
orange1.1g042438m.g Citrus sinensis orange1.1g042438m.g I 0.708
SHP1 Arabidopsis lyrata fgenesh2_kg.5__2325__AT3G58780.1 I 0.708
OMERI05G05900 Oryza meridionalis OMERI05G05900 I 0.708
GLYMA02G45730 Glycine max GLYMA02G45730 I 0.708
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.708
GSMUA_Achr10G14160_001 Musa acuminata GSMUA_Achr10G14160_001 I 0.708
GSMUA_Achr10G21480_001 Musa acuminata GSMUA_Achr10G21480_001 I 0.708
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.708
MLOC_57700 Hordeum vulgare MLOC_57700 I 0.708
ONIVA03G01420 Oryza nivara ONIVA03G01420 I 0.708
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.708
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.708
Bo9g014270 Brassica oleracea Bo9g014270 I 0.708
Sb01g049020 Sorghum bicolor Sb01g049020 I 0.708
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.708
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.708
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.708
Bo8g092930 Brassica oleracea Bo8g092930 I 0.708
Q40172_SOLLC Solanum lycopersicum Q40172_SOLLC I 0.708
Cucsa.362960 Cucumis sativus Cucsa.362960 I 0.708
Bra007419 Brassica rapa Bra007419 I 0.708
Solyc02g071730.2 Solanum lycopersicum Solyc02g071730.2 I 0.708
Bra000392 Brassica rapa Bra000392 I 0.708
Cla007057 Citrullus lanatus Cla007057 I 0.708
Ca_25684 Cicer arietinum Ca_25684 I 0.708
Bra004716 Brassica rapa Bra004716 I 0.708
Cla021117 Citrullus lanatus Cla021117 I 0.708
Bo9g093920 Brassica oleracea Bo9g093920 I 0.708
Solyc03g019710.2 Solanum lycopersicum Solyc03g019710.2 I 0.708
Pm024524 Prunus mume Pm024524 I 0.708
TCM_000992 Theobroma cacao TCM_000992 I 0.708
Cagra.21079s0001 Capsella grandiflora Cagra.21079s0001 I 0.708
Bra015645 Brassica rapa Bra015645 I 0.708
Bostr.20903s0120 Boechera stricta Bostr.20903s0120 I 0.708
OPUNC03G01630 Oryza punctata OPUNC03G01630 I 0.708
BRADI2G06330 Brachypodium distachyon BRADI2G06330 I 0.708
Aquca_022_00241 Aquilegia coerulea Aquca_022_00241 I 0.708
Bostr.25993s0500 Boechera stricta Bostr.25993s0500 I 0.708
Bostr.7867s0083 Boechera stricta Bostr.7867s0083 I 0.708
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.708
Cagra.0202s0031 Capsella grandiflora Cagra.0202s0031 I 0.708
Cagra.0096s0039 Capsella grandiflora Cagra.0096s0039 I 0.708
ONIVA05G07370 Oryza nivara ONIVA05G07370 I 0.708
SHP2 Arabidopsis thaliana AT2G42830 D 0.708
ORGLA03G0015400 Oryza glaberrima ORGLA03G0015400 I 0.708
MADS50 Oryza sativa OS03G0122600 D 0.708
PGSC0003DMG400028442 Solanum tuberosum PGSC0003DMG400028442 I 0.708
Bo4g017290 Brassica oleracea Bo4g017290 I 0.708
PGSC0003DMG401015205 Solanum tuberosum PGSC0003DMG401015205 I 0.708
AGL1 Arabidopsis thaliana AT3G58780 D 0.708
Bra029424 Brassica rapa Bra029424 I 0.708
ORUFI03G01510 Oryza rufipogon ORUFI03G01510 I 0.708
Bra026507 Brassica rapa Bra026507 I 0.708
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.707
H311_00382 Anncaliia algerae H311_00382 I 0.704
mgf000046m Mimulus guttatus mgf000046m I 0.702
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.700