Bra015643 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra015643 T253283_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL67
M10907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT1G77950_01 		0.833 0.833
AGL3
M02693_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 SELEX
Mathelier et al.(2014)
MA0001.2 		0.708 0.708
AGL3
M10908_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 Transfac
Matys et al.(2006)
P$AGL3_01 		0.708 0.708
AGL3
M10909_2.00 		Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN
NNWDCYAWWWWTGGNAHN		 Transfac
Matys et al.(2006)
P$AGL3_02 		0.708 0.708
AGL3
M10910_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL3_03 		0.708 0.708
Q40882_PETHY
M11003_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP11_01 		0.708 0.708
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.708 0.708
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.708 0.708
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.708 0.708
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra015643.1-P MADS box 10 57

Links

Other MADS box family TFs
Other Brassica rapa TFs

226 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo6g121640 Brassica oleracea Bo6g121640 I 1.000
Thhalv10019686m.g Eutrema salsugineum Thhalv10019686m.g I 1.000
AGL66 Arabidopsis thaliana AT1G77980 I 0.979
AGL66 Arabidopsis lyrata fgenesh2_kg.2__2091__AT1G77980.1 I 0.979
Cagra.0096s0037 Capsella grandiflora Cagra.0096s0037 I 0.979
Carubv10021590m.g Capsella rubella Carubv10021590m.g I 0.979
AGL104 Arabidopsis lyrata Al_scaffold_0001_2320 I 0.958
AGL104 Arabidopsis thaliana AT1G22130 I 0.958
Bo7g060150 Brassica oleracea Bo7g060150 I 0.958
Bo8g071330 Brassica oleracea Bo8g071330 I 0.958
Bra012308 Brassica rapa Bra012308 I 0.958
Bra016386 Brassica rapa Bra016386 I 0.958
Bostr.20129s0232 Boechera stricta Bostr.20129s0232 I 0.958
GSMUA_Achr9G13010_001 Musa acuminata GSMUA_Achr9G13010_001 I 0.938
TCM_001182 Theobroma cacao TCM_001182 I 0.938
TCM_034970 Theobroma cacao TCM_034970 I 0.938
Cagra.1707s0007 Capsella grandiflora Cagra.1707s0007 I 0.938
Carubv10010907m.g Capsella rubella Carubv10010907m.g I 0.938
Ciclev10003964m.g Citrus clementina Ciclev10003964m.g I 0.938
gene31290-v1.0-hybrid Fragaria vesca gene31290-v1.0-hybrid I 0.938
MDP0000243965 Malus domestica MDP0000243965 I 0.938
orange1.1g039560m.g Citrus sinensis orange1.1g039560m.g I 0.938
GRMZM2G152415 Zea mays GRMZM2G152415 I 0.917
GRMZM2G334225 Zea mays GRMZM2G334225 I 0.917
GSMUA_Achr3G04450_001 Musa acuminata GSMUA_Achr3G04450_001 I 0.917
LPERR06G07270 Leersia perrieri LPERR06G07270 I 0.917
OB08G26170 Oryza brachyantha OB08G26170 I 0.917
OLONG_004474 Oryza longistaminata OLONG_004474 I 0.917
ORUFI06G08110 Oryza rufipogon ORUFI06G08110 I 0.917
POPTR_0002s09290 Populus trichocarpa POPTR_0002s09290 I 0.917
POPTR_0007s05980 Populus trichocarpa POPTR_0007s05980 I 0.917
PRUPE_ppa007816mg Prunus persica PRUPE_ppa007816mg I 0.917
Sb10g007810 Sorghum bicolor Sb10g007810 I 0.917
Pm019181 Prunus mume Pm019181 I 0.917
29908.m005982 Ricinus communis 29908.m005982 I 0.917
cassava22012.m1 Manihot esculenta cassava22012.m1 I 0.917
cassava32041.m1 Manihot esculenta cassava32041.m1 I 0.917
Bostr.12659s0064 Boechera stricta Bostr.12659s0064 I 0.917
Gorai.005G093000 Gossypium raimondii Gorai.005G093000 I 0.917
SapurV1A.0010s0340 Salix purpurea SapurV1A.0010s0340 I 0.917
SapurV1A.0293s0130 Salix purpurea SapurV1A.0293s0130 I 0.917
AMTR_s00010p00214260 Amborella trichopoda AMTR_s00010p00214260 I 0.896
BGIOSGA003731 Oryza indica BGIOSGA003731 I 0.896
BGIOSGA026745 Oryza indica BGIOSGA026745 I 0.896
BRADI3G39177 Brachypodium distachyon BRADI3G39177 I 0.896
F775_03584 Aegilops tauschii F775_03584 I 0.896
LPERR08G16000 Leersia perrieri LPERR08G16000 I 0.896
OB06G17440 Oryza brachyantha OB06G17440 I 0.896
OBART06G07860 Oryza barthii OBART06G07860 I 0.896
OBART08G19110 Oryza barthii OBART08G19110 I 0.896
OGLUM06G08350 Oryza glumaepatula OGLUM06G08350 I 0.896
OGLUM08G20110 Oryza glumaepatula OGLUM08G20110 I 0.896
ONIVA06G09080 Oryza nivara ONIVA06G09080 I 0.896
OPUNC06G07570 Oryza punctata OPUNC06G07570 I 0.896
ORGLA06G0074200 Oryza glaberrima ORGLA06G0074200 I 0.896
ORGLA08G0167200 Oryza glaberrima ORGLA08G0167200 I 0.896
ORUFI08G21330 Oryza rufipogon ORUFI08G21330 I 0.896
OS06G0223300 Oryza sativa OS06G0223300 I 0.896
OS08G0494100 Oryza sativa OS08G0494100 I 0.896
Traes_4DS_A28BC582A Triticum aestivum Traes_4DS_A28BC582A I 0.896
TRIUR3_20588 Triticum urartu TRIUR3_20588 I 0.896
VIT_07s0031g01140 Vitis vinifera VIT_07s0031g01140 I 0.896
Ca_24539 Cicer arietinum Ca_24539 I 0.896
Cla014721 Citrullus lanatus Cla014721 I 0.896
Aquca_014_00554 Aquilegia coerulea Aquca_014_00554 I 0.896
Lus10016810.g Linum usitatissimum Lus10016810.g I 0.896
Lus10022506.g Linum usitatissimum Lus10022506.g I 0.896
Pavir.Db01574 Panicum virgatum Pavir.Db01574 I 0.896
Pavir.J32837 Panicum virgatum Pavir.J32837 I 0.896
GLYMA14G34160 Glycine max GLYMA14G34160 I 0.875
OMERI06G09450 Oryza meridionalis OMERI06G09450 I 0.875
ONIVA08G21050 Oryza nivara ONIVA08G21050 I 0.875
Si008439m.g Setaria italica Si008439m.g I 0.875
Si013985m.g Setaria italica Si013985m.g I 0.875
30170.m013776 Ricinus communis 30170.m013776 I 0.875
Aquca_032_00047 Aquilegia coerulea Aquca_032_00047 I 0.875
Gorai.005G100600 Gossypium raimondii Gorai.005G100600 I 0.875
Gorai.007G242000 Gossypium raimondii Gorai.007G242000 I 0.875
Gorai.009G216900 Gossypium raimondii Gorai.009G216900 I 0.875
Pavir.Fb01739 Panicum virgatum Pavir.Fb01739 I 0.875
fgenesh2_kg.2__2089__AT1G77950.1 Arabidopsis lyrata fgenesh2_kg.2__2089__AT1G77950.1 I 0.854
fgenesh2_kg.2__2429__AT1G77950.2 Arabidopsis lyrata fgenesh2_kg.2__2429__AT1G77950.2 I 0.854
GLYMA13G02170 Glycine max GLYMA13G02170 I 0.854
MTR_4g084740 Medicago truncatula MTR_4g084740 I 0.854
OMERI08G15140 Oryza meridionalis OMERI08G15140 I 0.854
OPUNC08G17110 Oryza punctata OPUNC08G17110 I 0.854
cassava25616.m1 Manihot esculenta cassava25616.m1 I 0.854
Lus10018714.g Linum usitatissimum Lus10018714.g I 0.854
Thhalv10019795m.g Eutrema salsugineum Thhalv10019795m.g I 0.854
AGL67 Arabidopsis thaliana AT1G77950 D 0.833
PRUPE_ppa020874mg Prunus persica PRUPE_ppa020874mg I 0.833
TCM_034757 Theobroma cacao TCM_034757 I 0.833
VIT_18s0001g09540 Vitis vinifera VIT_18s0001g09540 I 0.833
Pm005355 Prunus mume Pm005355 I 0.833
mgf017317m Mimulus guttatus mgf017317m I 0.833
Ciclev10001730m.g Citrus clementina Ciclev10001730m.g I 0.833
MDP0000152821 Malus domestica MDP0000152821 I 0.833
orange1.1g046530m.g Citrus sinensis orange1.1g046530m.g I 0.833
PRUPE_ppa023054mg Prunus persica PRUPE_ppa023054mg I 0.812
Solyc04g078300.2 Solanum lycopersicum Solyc04g078300.2 I 0.812
Ca_01572 Cicer arietinum Ca_01572 I 0.812
Cagra.0096s0039 Capsella grandiflora Cagra.0096s0039 I 0.812
Carubv10021761m.g Capsella rubella Carubv10021761m.g I 0.812
evm.TU.supercontig_21.133 Carica papaya evm.TU.supercontig_21.133 I 0.812
Lus10024823.g Linum usitatissimum Lus10024823.g I 0.812
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.793
GLYMA04G04641 Glycine max GLYMA04G04641 I 0.792
MTR_3g102570 Medicago truncatula MTR_3g102570 I 0.792
estExt_fgenesh1_kg.C_550007 Physcomitrella patens estExt_fgenesh1_kg.C_550007 I 0.792
estExt_fgenesh1_pm.C_80015 Physcomitrella patens estExt_fgenesh1_pm.C_80015 I 0.792
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.788
PGSC0003DMG401015205 Solanum tuberosum PGSC0003DMG401015205 I 0.771
Q40172_SOLLC Solanum lycopersicum Q40172_SOLLC I 0.771
Solyc03g019710.2 Solanum lycopersicum Solyc03g019710.2 I 0.771
e_gw1.55.5.1 Physcomitrella patens e_gw1.55.5.1 I 0.771
estExt_fgenesh1_pg.C_1180093 Physcomitrella patens estExt_fgenesh1_pg.C_1180093 I 0.771
estExt_gwp_gw1.C_900087 Physcomitrella patens estExt_gwp_gw1.C_900087 I 0.771
POPTR_0005s16500 Populus trichocarpa POPTR_0005s16500 N 0.769
Bo6g121610 Brassica oleracea Bo6g121610 I 0.750
Bra015645 Brassica rapa Bra015645 I 0.750
SELMODRAFT_449720 Selaginella moellendorffii SELMODRAFT_449720 N 0.750
SELMODRAFT_449721 Selaginella moellendorffii SELMODRAFT_449721 N 0.750
e_gw1.273.6.1 Physcomitrella patens e_gw1.273.6.1 I 0.750
estExt_Genewise1.C_80073 Physcomitrella patens estExt_Genewise1.C_80073 I 0.750
estExt_gwp_gw1.C_1630046 Physcomitrella patens estExt_gwp_gw1.C_1630046 I 0.750
fgenesh1_pg.scaffold_163000049 Physcomitrella patens fgenesh1_pg.scaffold_163000049 I 0.750
mgf019100m Mimulus guttatus mgf019100m N 0.750
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.743
MTR_5g061740 Medicago truncatula MTR_5g061740 N 0.741
Gorai.009G358500 Gossypium raimondii Gorai.009G358500 I 0.737
MTR_7g075850 Medicago truncatula MTR_7g075850 I 0.729
OPUNC08G19670 Oryza punctata OPUNC08G19670 I 0.729
ORUFI08G24040 Oryza rufipogon ORUFI08G24040 I 0.729
PGSC0003DMG400025525 Solanum tuberosum PGSC0003DMG400025525 I 0.729
Solyc11g028020.1 Solanum lycopersicum Solyc11g028020.1 I 0.729
Ca_06280 Cicer arietinum Ca_06280 I 0.729
Cla002664 Citrullus lanatus Cla002664 I 0.729
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.729
Cucsa.392160 Cucumis sativus Cucsa.392160 I 0.729
estExt_gwp_gw1.C_340302 Physcomitrella patens estExt_gwp_gw1.C_340302 I 0.729
mgf006616m Mimulus guttatus mgf006616m I 0.729
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.729
Gorai.007G043400 Gossypium raimondii Gorai.007G043400 I 0.729
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.729
MDP0000268317 Malus domestica MDP0000268317 I 0.729
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.729
Pavir.Ea03607 Panicum virgatum Pavir.Ea03607 I 0.729
PK21701.1 Cannabis sativa PK21701.1 I 0.729
MDP0000179718 Malus domestica MDP0000179718 I 0.727
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.720
SEP4 Arabidopsis lyrata Al_scaffold_0005_309 I 0.708
AGL3 Arabidopsis thaliana AT2G03710 D 0.708
BGIOSGA004940 Oryza indica BGIOSGA004940 I 0.708
MADS56 Oryza indica BGIOSGA033356 I 0.708
Bo1g031900 Brassica oleracea Bo1g031900 I 0.708
Bo2g137070 Brassica oleracea Bo2g137070 I 0.708
Bo7g081460 Brassica oleracea Bo7g081460 I 0.708
Bo9g074400 Brassica oleracea Bo9g074400 I 0.708
Bra013662 Brassica rapa Bra013662 I 0.708
Bra026543 Brassica rapa Bra026543 I 0.708
BRADI3G32090 Brachypodium distachyon BRADI3G32090 I 0.708
F775_29801 Aegilops tauschii F775_29801 I 0.708
GRMZM2G018589 Zea mays GRMZM2G018589 I 0.708
GSMUA_Achr10G10990_001 Musa acuminata GSMUA_Achr10G10990_001 I 0.708
GSMUA_Achr10G21480_001 Musa acuminata GSMUA_Achr10G21480_001 I 0.708
GSMUA_Achr2G04350_001 Musa acuminata GSMUA_Achr2G04350_001 I 0.708
GSMUA_Achr2G06250_001 Musa acuminata GSMUA_Achr2G06250_001 I 0.708
GSMUA_Achr7G23690_001 Musa acuminata GSMUA_Achr7G23690_001 I 0.708
LPERR01G34270 Leersia perrieri LPERR01G34270 I 0.708
LPERR10G12950 Leersia perrieri LPERR10G12950 I 0.708
MTR_8g033220 Medicago truncatula MTR_8g033220 I 0.708
OB01G48510 Oryza brachyantha OB01G48510 I 0.708
OB10G24040 Oryza brachyantha OB10G24040 I 0.708
OBART01G39740 Oryza barthii OBART01G39740 I 0.708
OBART10G16960 Oryza barthii OBART10G16960 I 0.708
OGLUM01G43970 Oryza glumaepatula OGLUM01G43970 I 0.708
OGLUM10G16960 Oryza glumaepatula OGLUM10G16960 I 0.708
OLONG_003033 Oryza longistaminata OLONG_003033 I 0.708
OLONG_017665 Oryza longistaminata OLONG_017665 I 0.708
OMERI01G36640 Oryza meridionalis OMERI01G36640 I 0.708
OMERI10G13430 Oryza meridionalis OMERI10G13430 I 0.708
ONIVA01G44610 Oryza nivara ONIVA01G44610 I 0.708
ONIVA10G18680 Oryza nivara ONIVA10G18680 I 0.708
OPUNC01G38480 Oryza punctata OPUNC01G38480 I 0.708
ORGLA01G0336500 Oryza glaberrima ORGLA01G0336500 I 0.708
ORGLA10G0119200 Oryza glaberrima ORGLA10G0119200 I 0.708
ORUFI01G43090 Oryza rufipogon ORUFI01G43090 I 0.708
ORUFI10G17990 Oryza rufipogon ORUFI10G17990 I 0.708
MADS21 Oryza sativa OS01G0886200 I 0.708
MADS56 Oryza sativa OS10G0536100 I 0.708
PRUPE_ppa011140mg Prunus persica PRUPE_ppa011140mg I 0.708
Sb03g042080 Sorghum bicolor Sb03g042080 I 0.708
Si002551m.g Setaria italica Si002551m.g I 0.708
Solyc05g012020.2 Solanum lycopersicum Solyc05g012020.2 D 0.708
Solyc06g035570.1 Solanum lycopersicum Solyc06g035570.1 I 0.708
TCM_014051 Theobroma cacao TCM_014051 I 0.708
Traes_1AL_6B108514B Triticum aestivum Traes_1AL_6B108514B I 0.708
Traes_1BL_F1D5BF5F8 Triticum aestivum Traes_1BL_F1D5BF5F8 I 0.708
Traes_1DL_D5BBCA2D0 Triticum aestivum Traes_1DL_D5BBCA2D0 I 0.708
TRIUR3_32699 Triticum urartu TRIUR3_32699 I 0.708
VIT_17s0000g01230 Vitis vinifera VIT_17s0000g01230 I 0.708
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.708
VIT_18s0001g04810 Vitis vinifera VIT_18s0001g04810 I 0.708
Pm004218 Prunus mume Pm004218 I 0.708
Q40882_PETHY Petunia x hybrida Q40882_PETHY D 0.708
30147.m014133 Ricinus communis 30147.m014133 I 0.708
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.708
cassava38700.m1 Manihot esculenta cassava38700.m1 I 0.708
Bostr.0556s0185 Boechera stricta Bostr.0556s0185 I 0.708
Bostr.7867s0083 Boechera stricta Bostr.7867s0083 I 0.708
Cagra.0447s0009 Capsella grandiflora Cagra.0447s0009 I 0.708
Carubv10017787m.g Capsella rubella Carubv10017787m.g I 0.708
Ciclev10016427m.g Citrus clementina Ciclev10016427m.g I 0.708
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.708
Eucgr.E01330 Eucalyptus grandis Eucgr.E01330 I 0.708
evm.TU.supercontig_13.95 Carica papaya evm.TU.supercontig_13.95 I 0.708
Gorai.001G172200 Gossypium raimondii Gorai.001G172200 I 0.708
Lus10002763.g Linum usitatissimum Lus10002763.g I 0.708
Lus10036543.g Linum usitatissimum Lus10036543.g I 0.708
MDP0000193129 Malus domestica MDP0000193129 I 0.708
O82698_MALDO Malus domestica O82698_MALDO D 0.708
Pavir.Ab00058 Panicum virgatum Pavir.Ab00058 I 0.708
Thhalv10004767m.g Eutrema salsugineum Thhalv10004767m.g I 0.708
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I 0.705
H311_00382 Anncaliia algerae H311_00382 I 0.704
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.700