fgenesh2_kg.8__2584__AT5G65330.1 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 fgenesh2_kg.8__2584__AT5G65330.1 T254045_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.938 0.938
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.8__2584__AT5G65330.1 MADS box 8 55

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SCL13 Arabidopsis thaliana AT4G17230 N 0.000
Bo1g052870 Brassica oleracea Bo1g052870 N 0.000
Bo8g047170 Brassica oleracea Bo8g047170 N 0.000
Bostr.30275s0178 Boechera stricta Bostr.30275s0178 N 0.000
Bra026237 Brassica rapa Bra026237 N 0.000
Cagra.3356s0014 Capsella grandiflora Cagra.3356s0014 N 0.000
Carubv10004566m.g Capsella rubella Carubv10004566m.g N 0.000
evm.TU.supercontig_27.254 Carica papaya evm.TU.supercontig_27.254 N 0.000
SCL13 Arabidopsis lyrata fgenesh2_kg.7__2586__AT4G17230.1 N 0.000
Thhalv10024887m.g Eutrema salsugineum Thhalv10024887m.g N 0.000