OBART04G13770 (Oryza barthii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 OBART04G13770 T254976_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL12
M10906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL12_01 		0.854 0.854
MADS26
M10974_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS26_01 		0.771 0.771
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.729 0.729
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.729 0.729
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.729 0.729
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.729 0.729
MLOC_61901
M10964_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM8_01 		0.708 0.708
Q40882_PETHY
M11003_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP11_01 		0.708 0.708
Q9FR84_MAIZE
M10981_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_03 		0.708 0.708
Q41829_MAIZE
M10977_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ZAP1_02 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART04G13770.1 MADS box 10 57

Links

Other MADS box family TFs
Other Oryza barthii TFs

255 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29736.m002013 Ricinus communis 29736.m002013 I
AMTR_s00010p00252990 Amborella trichopoda AMTR_s00010p00252990 I
Aquca_002_00543 Aquilegia coerulea Aquca_002_00543 I
MYB124 Arabidopsis thaliana AT1G14350 D
MYB88 Arabidopsis thaliana AT2G02820 D
BGIOSGA026188 Oryza indica BGIOSGA026188 I
Bo2g136560 Brassica oleracea Bo2g136560 I
Bo5g019500 Brassica oleracea Bo5g019500 I
Bo7g080730 Brassica oleracea Bo7g080730 I
Bostr.0556s0099 Boechera stricta Bostr.0556s0099 I
Bra019658 Brassica rapa Bra019658 I
Bra024804 Brassica rapa Bra024804 I
Cagra.0534s0022 Capsella grandiflora Cagra.0534s0022 I
Cagra.3501s0066 Capsella grandiflora Cagra.3501s0066 I
Carubv10011707m.g Capsella rubella Carubv10011707m.g I
Carubv10017119m.g Capsella rubella Carubv10017119m.g I
cassava35260.valid.m1 Manihot esculenta cassava35260.valid.m1 I
cassava39089.m1 Manihot esculenta cassava39089.m1 I
Ca_18779 Cicer arietinum Ca_18779 I
Ciclev10031405m.g Citrus clementina Ciclev10031405m.g I
Cla010333 Citrullus lanatus Cla010333 I
Cucsa.285270 Cucumis sativus Cucsa.285270 I
Eucgr.B03417 Eucalyptus grandis Eucgr.B03417 I
Eucgr.G02522 Eucalyptus grandis Eucgr.G02522 I
evm.TU.supercontig_183.27 Carica papaya evm.TU.supercontig_183.27 I
FLP Arabidopsis lyrata fgenesh2_kg.1__1561__AT1G14350.1 I
MYB88 Arabidopsis lyrata fgenesh2_kg.5__181__AT2G02820.2 I
GLYMA01G05190 Glycine max GLYMA01G05190 I
GLYMA02G02310 Glycine max GLYMA02G02310 I
GLYMA08G40950 Glycine max GLYMA08G40950 I
GLYMA18G16040 Glycine max GLYMA18G16040 I
Gorai.005G139500 Gossypium raimondii Gorai.005G139500 I
Gorai.013G083300 Gossypium raimondii Gorai.013G083300 I
GRMZM2G064630 Zea mays GRMZM2G064630 I
GSMUA_Achr10G18880_001 Musa acuminata GSMUA_Achr10G18880_001 I
LPERR07G19800 Leersia perrieri LPERR07G19800 I
Lus10012847.g Linum usitatissimum Lus10012847.g I
Lus10030494.g Linum usitatissimum Lus10030494.g I
MDP0000165523 Malus domestica MDP0000165523 I
MDP0000210970 Malus domestica MDP0000210970 I
mgf009409m Mimulus guttatus mgf009409m I
MTR_5g038910 Medicago truncatula MTR_5g038910 I
MTR_8g468380 Medicago truncatula MTR_8g468380 I
OB07G28520 Oryza brachyantha OB07G28520 I
OBART07G22930 Oryza barthii OBART07G22930 I
OGLUM07G22980 Oryza glumaepatula OGLUM07G22980 I
OPUNC07G21540 Oryza punctata OPUNC07G21540 I
orange1.1g044977m.g Citrus sinensis orange1.1g044977m.g I
ORGLA07G0179200 Oryza glaberrima ORGLA07G0179200 I
ORUFI07G24080 Oryza rufipogon ORUFI07G24080 I
OS07G0627300 Oryza sativa OS07G0627300 I
Pavir.Bb03405 Panicum virgatum Pavir.Bb03405 I
Pavir.J36475 Panicum virgatum Pavir.J36475 I
PDK_20s1473891g001 Phoenix dactylifera PDK_20s1473891g001 I
PGSC0003DMG400002828 Solanum tuberosum PGSC0003DMG400002828 I
PGSC0003DMG400025612 Solanum tuberosum PGSC0003DMG400025612 I
PGSC0003DMG400026758 Solanum tuberosum PGSC0003DMG400026758 I
PK05123.1 Cannabis sativa PK05123.1 I
Pm006532 Prunus mume Pm006532 I
POPTR_0008s14790 Populus trichocarpa POPTR_0008s14790 I
POPTR_0010s10310 Populus trichocarpa POPTR_0010s10310 I
PRUPE_ppa017536mg Prunus persica PRUPE_ppa017536mg I
SapurV1A.0062s0030 Salix purpurea SapurV1A.0062s0030 I
SapurV1A.0200s0020 Salix purpurea SapurV1A.0200s0020 I
Sb02g040050 Sorghum bicolor Sb02g040050 I
Si029124m.g Setaria italica Si029124m.g I
Solyc04g005710.1 Solanum lycopersicum Solyc04g005710.1 I
Solyc05g007160.2 Solanum lycopersicum Solyc05g007160.2 I
TCM_011776 Theobroma cacao TCM_011776 I
Thhalv10004109m.g Eutrema salsugineum Thhalv10004109m.g I
Thhalv10007659m.g Eutrema salsugineum Thhalv10007659m.g I
Traes_2AS_1161E1D2E Triticum aestivum Traes_2AS_1161E1D2E I
Traes_2BS_F1B450FA4 Triticum aestivum Traes_2BS_F1B450FA4 I
Traes_2DS_9430AAD52 Triticum aestivum Traes_2DS_9430AAD52 I
VIT_01s0026g01910 Vitis vinifera VIT_01s0026g01910 I