VIT_03s0017g00440 (Vitis vinifera)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 VIT_03s0017g00440 T256775_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.750 0.750
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.750 0.750
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.750 0.750
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.708 0.708
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.708 0.708
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.708 0.708
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.708 0.708
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.708 0.708
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_03s0017g00440.t01 MADS box 10 57

Links

Other MADS box family TFs
Other Vitis vinifera TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29838.m001690 Ricinus communis 29838.m001690 I 0.854
AMTR_s00053p00228660 Amborella trichopoda AMTR_s00053p00228660 I 0.708
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.771
Aquca_009_00337 Aquilegia coerulea Aquca_009_00337 I 0.708
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.812
SVP Arabidopsis thaliana AT2G22540 D 0.750
AGL79 Arabidopsis thaliana AT3G30260 I 0.708
AGL24 Arabidopsis thaliana AT4G24540 I 0.750
AGL15 Arabidopsis thaliana AT5G13790 D 0.708
BGIOSGA011317 Oryza indica BGIOSGA011317 I 0.750
Bo1g039080 Brassica oleracea Bo1g039080 I 0.729
Bo4g149800 Brassica oleracea Bo4g149800 I 0.771
Bo7g109590 Brassica oleracea Bo7g109590 I 0.750
Bo8g101000 Brassica oleracea Bo8g101000 I 0.750
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.750
Bostr.7867s0261 Boechera stricta Bostr.7867s0261 I 0.729
Bra013812 Brassica rapa Bra013812 I 0.729
Bra019221 Brassica rapa Bra019221 I 0.750
Bra030228 Brassica rapa Bra030228 I 0.771
Bra038511 Brassica rapa Bra038511 I 0.750
BRADI1G72150 Brachypodium distachyon BRADI1G72150 I 0.729
squamosa Antirrhinum majus CAA45228.1 D 0.708
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.750
Cagra.2171s0007 Capsella grandiflora Cagra.2171s0007 I 0.729
Carubv10005653m.g Capsella rubella Carubv10005653m.g I 0.729
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.750
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.833
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.812
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.812
cassava39138.m1 Manihot esculenta cassava39138.m1 I 0.708
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.771
Ca_01491 Cicer arietinum Ca_01491 I 0.729
Ca_12416 Cicer arietinum Ca_12416 I 0.729
Ca_21060 Cicer arietinum Ca_21060 I 0.750
chr4.CM0100.30.nc Lotus japonicus chr4.CM0100.30.nc I 0.812
Ciclev10026457m.g Citrus clementina Ciclev10026457m.g I 0.771
Ciclev10029776m.g Citrus clementina Ciclev10029776m.g I 0.812
Cla013108 Citrullus lanatus Cla013108 N 0.750
Cla014322 Citrullus lanatus Cla014322 I 0.792
Cla022499 Citrullus lanatus Cla022499 I 0.750
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.792
Cucsa.160640 Cucumis sativus Cucsa.160640 I 0.771
Cucsa.190400 Cucumis sativus Cucsa.190400 N 0.750
Cucsa.331840 Cucumis sativus Cucsa.331840 I 0.833
Eucgr.F00420 Eucalyptus grandis Eucgr.F00420 I 0.792
Eucgr.F02141 Eucalyptus grandis Eucgr.F02141 I 0.708
Eucgr.F02146 Eucalyptus grandis Eucgr.F02146 I 0.708
Eucgr.I00556 Eucalyptus grandis Eucgr.I00556 I 0.771
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.708
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.771
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.812
F775_26069 Aegilops tauschii F775_26069 I 0.729
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.750
AGL24 Arabidopsis lyrata fgenesh2_kg.7__1822__AT4G24540.1 I 0.750
gene03714-v1.0-hybrid Fragaria vesca gene03714-v1.0-hybrid I 0.708
gene03748-v1.0-hybrid Fragaria vesca gene03748-v1.0-hybrid I 0.708
gene12120-v1.0-hybrid Fragaria vesca gene12120-v1.0-hybrid I 0.750
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I 0.771
gene29503-v1.0-hybrid Fragaria vesca gene29503-v1.0-hybrid I 0.708
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.771
GLYMA02G04710 Glycine max GLYMA02G04710 I 0.750
GLYMA04G10015 Glycine max GLYMA04G10015 I 0.771
GLYMA06G10020 Glycine max GLYMA06G10020 I 0.771
GLYMA07G30040 Glycine max GLYMA07G30040 I 0.812
GLYMA08G07260 Glycine max GLYMA08G07260 I 0.812
GLYMA11G16105 Glycine max GLYMA11G16105 I 0.750
GLYMA12G17721 Glycine max GLYMA12G17721 I 0.729
GLYMA13G33031 Glycine max GLYMA13G33031 I 0.750
GLYMA13G33051 Glycine max GLYMA13G33051 I 0.833
GLYMA15G06302 Glycine max GLYMA15G06302 I 0.875
GLYMA15G06314 Glycine max GLYMA15G06314 I 0.750
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I 0.792
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.854
Gorai.008G017200 Gossypium raimondii Gorai.008G017200 I 0.875
Gorai.008G092300 Gossypium raimondii Gorai.008G092300 I 0.708
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I 0.792
Gorai.013G055700 Gossypium raimondii Gorai.013G055700 I 0.875
GRMZM2G046885 Zea mays GRMZM2G046885 I 0.708
GRMZM2G059102 Zea mays GRMZM2G059102 I 0.750
GSMUA_Achr10G19290_001 Musa acuminata GSMUA_Achr10G19290_001 I 0.771
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I 0.812
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I 0.812
LjT38P01.180.nd Lotus japonicus LjT38P01.180.nd I 0.771
LPERR02G27330 Leersia perrieri LPERR02G27330 I 0.708
LPERR03G05670 Leersia perrieri LPERR03G05670 I 0.729
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.750
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.750
MDP0000209705 Malus domestica MDP0000209705 I 0.792
MDP0000233948 Malus domestica MDP0000233948 I 0.771
mgf015964m Mimulus guttatus mgf015964m I 0.854
mgf023192m Mimulus guttatus mgf023192m I 0.750
mgf025830m Mimulus guttatus mgf025830m I 0.729
MTR_1g041615 Medicago truncatula MTR_1g041615 I 0.708
MTR_4g093970 Medicago truncatula MTR_4g093970 I 0.792
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.729
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.729
MTR_5g066180 Medicago truncatula MTR_5g066180 I 0.708
OBART03G06320 Oryza barthii OBART03G06320 I 0.750
OGLUM03G06330 Oryza glumaepatula OGLUM03G06330 I 0.750
OMERI03G06190 Oryza meridionalis OMERI03G06190 I 0.750
ONIVA02G06550 Oryza nivara ONIVA02G06550 I 0.750
OPUNC03G06100 Oryza punctata OPUNC03G06100 I 0.750
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.771
orange1.1g034384m.g Citrus sinensis orange1.1g034384m.g I 0.771
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.771
ORGLA03G0061100 Oryza glaberrima ORGLA03G0061100 I 0.750
ORUFI03G06210 Oryza rufipogon ORUFI03G06210 I 0.750
OS03G0186600 Oryza sativa OS03G0186600 I 0.750
Pavir.Da01333 Panicum virgatum Pavir.Da01333 I 0.729
Pavir.Ia04527 Panicum virgatum Pavir.Ia04527 I 0.750
Pavir.Ib00555 Panicum virgatum Pavir.Ib00555 I 0.729
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I 0.750
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.750
PGSC0003DMG400033570 Solanum tuberosum PGSC0003DMG400033570 I 0.854
PK11571.1 Cannabis sativa PK11571.1 I 0.812
PK20651.1 Cannabis sativa PK20651.1 I 0.708
PK28167.1 Cannabis sativa PK28167.1 I 0.792
Pm002166 Prunus mume Pm002166 I 0.812
Pm004416 Prunus mume Pm004416 I 0.708
Pm004420 Prunus mume Pm004420 I 0.708
Pm022002 Prunus mume Pm022002 I 0.875
Pm025026 Prunus mume Pm025026 I 0.708
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I 0.812
POPTR_0007s03270 Populus trichocarpa POPTR_0007s03270 I 0.896
POPTR_0007s03290 Populus trichocarpa POPTR_0007s03290 I 0.896
POPTR_0007s03310 Populus trichocarpa POPTR_0007s03310 I 0.812
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.750
AGL15 Populus trichocarpa POPTR_0009s06060 I 0.729
POPTR_0017s07170 Populus trichocarpa POPTR_0017s07170 I 0.812
PRUPE_ppa010308mg Prunus persica PRUPE_ppa010308mg I 0.708
PRUPE_ppa010714mg Prunus persica PRUPE_ppa010714mg I 0.708
PRUPE_ppa010822mg Prunus persica PRUPE_ppa010822mg I 0.708
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.812
PRUPE_ppa022274mg Prunus persica PRUPE_ppa022274mg I 0.896
Q38742_ANTMA Antirrhinum majus Q38742_ANTMA D 0.708
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I 0.812
SapurV1A.0027s0860 Salix purpurea SapurV1A.0027s0860 I 0.708
SapurV1A.0187s0010 Salix purpurea SapurV1A.0187s0010 I 0.896
SapurV1A.0463s0130 Salix purpurea SapurV1A.0463s0130 I 0.812
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.750
Sb01g044810 Sorghum bicolor Sb01g044810 I 0.750
Si007641m.g Setaria italica Si007641m.g I 0.708
Si037358m.g Setaria italica Si037358m.g I 0.750
Solyc01g105800.2 Solanum lycopersicum Solyc01g105800.2 I 0.854
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.750
TCM_000992 Theobroma cacao TCM_000992 I 0.729
TCM_007378 Theobroma cacao TCM_007378 I 0.896
TCM_034501 Theobroma cacao TCM_034501 I 0.812
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.750
Thhalv10005641m.g Eutrema salsugineum Thhalv10005641m.g I 0.708
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I 0.750
Traes_4BL_410DEBFD3 Triticum aestivum Traes_4BL_410DEBFD3 I 0.729
Traes_4DL_67EFB6303 Triticum aestivum Traes_4DL_67EFB6303 I 0.729
SVP Vitis vinifera VIT_00s0313g00070 I 0.750
VIT_00s0729g00010 Vitis vinifera VIT_00s0729g00010 I 0.938
VIT_03s0017g00360 Vitis vinifera VIT_03s0017g00360 I 0.958
VIT_03s0017g00450 Vitis vinifera VIT_03s0017g00450 I 0.958
VIT_03s0167g00100 Vitis vinifera VIT_03s0167g00100 I 0.917
VIT_15s0024g01860 Vitis vinifera VIT_15s0024g01860 I 0.896
VIT_15s0024g02000 Vitis vinifera VIT_15s0024g02000 I 0.917
VIT_15s0107g00120 Vitis vinifera VIT_15s0107g00120 I 0.938
AGL24 Vitis vinifera VIT_18s0001g07460 I 0.771