gene03714-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene03714-v1.0-hybrid T258298_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.723 0.723
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.723 0.723
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna03714.1-v1.0-hybrid MADS box 12 58

Links

Other MADS box family TFs
Other Fragaria vesca TFs

213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene03748-v1.0-hybrid Fragaria vesca gene03748-v1.0-hybrid I 0.957
gene12120-v1.0-hybrid Fragaria vesca gene12120-v1.0-hybrid I 0.872
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.809
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I 0.787
gene05180-v1.0-hybrid Fragaria vesca gene05180-v1.0-hybrid I 0.787
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I 0.787
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I 0.787
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.787
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I 0.787
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.787
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.766
Ca_19854 Cicer arietinum Ca_19854 I 0.766
TCM_034501 Theobroma cacao TCM_034501 I 0.766
PRUPE_ppa018667mg Prunus persica PRUPE_ppa018667mg I 0.766
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.750
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.750
Eucgr.F00420 Eucalyptus grandis Eucgr.F00420 I 0.750
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.750
Bra013812 Brassica rapa Bra013812 I 0.750
Bo1g039080 Brassica oleracea Bo1g039080 I 0.750
PRUPE_ppa010714mg Prunus persica PRUPE_ppa010714mg I 0.745
PRUPE_ppa010822mg Prunus persica PRUPE_ppa010822mg I 0.745
Cla014322 Citrullus lanatus Cla014322 I 0.745
VIT_15s0107g00120 Vitis vinifera VIT_15s0107g00120 I 0.745
Solyc01g105800.2 Solanum lycopersicum Solyc01g105800.2 I 0.745
Eucgr.F02141 Eucalyptus grandis Eucgr.F02141 I 0.745
MDP0000233948 Malus domestica MDP0000233948 I 0.745
MDP0000322567 Malus domestica MDP0000322567 I 0.745
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I 0.745
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I 0.745
Eucgr.F02146 Eucalyptus grandis Eucgr.F02146 I 0.745
Pm004420 Prunus mume Pm004420 I 0.745
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.745
PGSC0003DMG400033570 Solanum tuberosum PGSC0003DMG400033570 I 0.745
Cla022499 Citrullus lanatus Cla022499 I 0.745
Pm004416 Prunus mume Pm004416 I 0.745
GLYMA02G33040 Glycine max GLYMA02G33040 I 0.745
MDP0000277582 Malus domestica MDP0000277582 N 0.729
MDP0000527190 Malus domestica MDP0000527190 I 0.729
Pm004419 Prunus mume Pm004419 I 0.723
MDP0000143531 Malus domestica MDP0000143531 N 0.723
Pm022002 Prunus mume Pm022002 I 0.723
MDP0000144516 Malus domestica MDP0000144516 I 0.723
MDP0000209705 Malus domestica MDP0000209705 I 0.723
MDP0000135652 Malus domestica MDP0000135652 I 0.723
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.723
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.723
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.723
Lus10039580.g Linum usitatissimum Lus10039580.g I 0.723
Pm004417 Prunus mume Pm004417 I 0.723
Pm004415 Prunus mume Pm004415 I 0.723
Bo8g101000 Brassica oleracea Bo8g101000 I 0.723
GRMZM2G059102 Zea mays GRMZM2G059102 I 0.723
AGL15 Vitis vinifera VIT_13s0158g00100 I 0.723
VIT_03s0167g00100 Vitis vinifera VIT_03s0167g00100 I 0.723
MDP0000378412 Malus domestica MDP0000378412 I 0.723
GLYMA15G06302 Glycine max GLYMA15G06302 I 0.723
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.723
Pm002166 Prunus mume Pm002166 I 0.723
MDP0000255146 Malus domestica MDP0000255146 I 0.723
MDP0000259294 Malus domestica MDP0000259294 I 0.723
AMTR_s00053p00228660 Amborella trichopoda AMTR_s00053p00228660 I 0.723
OBART03G06320 Oryza barthii OBART03G06320 I 0.723
Gorai.003G090800 Gossypium raimondii Gorai.003G090800 I 0.723
Eucgr.F02145 Eucalyptus grandis Eucgr.F02145 I 0.723
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.723
Ciclev10026457m.g Citrus clementina Ciclev10026457m.g I 0.723
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.723
Bra038511 Brassica rapa Bra038511 I 0.723
Eucgr.G03284 Eucalyptus grandis Eucgr.G03284 I 0.723
gene12119-v1.0-hybrid Fragaria vesca gene12119-v1.0-hybrid I 0.723
Bra019221 Brassica rapa Bra019221 I 0.723
Bo7g109590 Brassica oleracea Bo7g109590 I 0.723
Eucgr.I02600 Eucalyptus grandis Eucgr.I02600 I 0.723
Carubv10015972m.g Capsella rubella Carubv10015972m.g I 0.723
Cagra.3821s0004 Capsella grandiflora Cagra.3821s0004 I 0.723
mgf015964m Mimulus guttatus mgf015964m I 0.723
mgf019667m Mimulus guttatus mgf019667m I 0.723
Lus10005325.g Linum usitatissimum Lus10005325.g I 0.723
Cucsa.160640 Cucumis sativus Cucsa.160640 I 0.723
AGL24 Arabidopsis lyrata fgenesh2_kg.7__1822__AT4G24540.1 I 0.723
mgf023192m Mimulus guttatus mgf023192m I 0.723
mgf025830m Mimulus guttatus mgf025830m I 0.723
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.723
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.723
Bostr.13083s0004 Boechera stricta Bostr.13083s0004 I 0.723
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.723
BGIOSGA011317 Oryza indica BGIOSGA011317 I 0.723
AGL24 Vitis vinifera VIT_18s0001g07460 I 0.723
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.723
PRUPE_ppa011123mg Prunus persica PRUPE_ppa011123mg I 0.723
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.723
ANR1 Arabidopsis thaliana AT2G14210 I 0.723
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.723
SapurV1A.2345s0030 Salix purpurea SapurV1A.2345s0030 I 0.723
PRUPE_ppa022274mg Prunus persica PRUPE_ppa022274mg I 0.723
SELMODRAFT_450818 Selaginella moellendorffii SELMODRAFT_450818 I 0.723
SapurV1A.1370s0060 Salix purpurea SapurV1A.1370s0060 I 0.723
Sb01g044810 Sorghum bicolor Sb01g044810 I 0.723
PRUPE_ppb017585mg Prunus persica PRUPE_ppb017585mg I 0.723
POPTR_0007s03290 Populus trichocarpa POPTR_0007s03290 I 0.723
POPTR_0007s03270 Populus trichocarpa POPTR_0007s03270 I 0.723
OPUNC03G06100 Oryza punctata OPUNC03G06100 I 0.723
ONIVA02G06550 Oryza nivara ONIVA02G06550 I 0.723
OMERI03G06190 Oryza meridionalis OMERI03G06190 I 0.723
OGLUM03G06330 Oryza glumaepatula OGLUM03G06330 I 0.723
ORGLA03G0061100 Oryza glaberrima ORGLA03G0061100 I 0.723
ORUFI03G06210 Oryza rufipogon ORUFI03G06210 I 0.723
MTR_1g053070 Medicago truncatula MTR_1g053070 I 0.723
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I 0.723
PGSC0003DMG400009349 Solanum tuberosum PGSC0003DMG400009349 I 0.723
OS03G0186600 Oryza sativa OS03G0186600 I 0.723
SELMODRAFT_450937 Selaginella moellendorffii SELMODRAFT_450937 I 0.723
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.723
Pavir.Ia04527 Panicum virgatum Pavir.Ia04527 I 0.723
orange1.1g034384m.g Citrus sinensis orange1.1g034384m.g I 0.723
SVP Arabidopsis thaliana AT2G22540 D 0.723
TCM_007378 Theobroma cacao TCM_007378 I 0.723
SVP Vitis vinifera VIT_00s0313g00070 I 0.723
AGL24 Arabidopsis thaliana AT4G24540 I 0.723
GSMUA_Achr10G19290_001 Musa acuminata GSMUA_Achr10G19290_001 I 0.723
Solyc04g076680.2 Solanum lycopersicum Solyc04g076680.2 I 0.723
SapurV1A.0019s1110 Salix purpurea SapurV1A.0019s1110 I 0.723
Solyc01g087990.2 Solanum lycopersicum Solyc01g087990.2 I 0.723
Si037358m.g Setaria italica Si037358m.g I 0.723
SapurV1A.0463s0130 Salix purpurea SapurV1A.0463s0130 I 0.723
SapurV1A.0187s0010 Salix purpurea SapurV1A.0187s0010 I 0.723
SapurV1A.0228s0130 Salix purpurea SapurV1A.0228s0130 I 0.723
VIT_03s0017g00360 Vitis vinifera VIT_03s0017g00360 I 0.723
Gorai.007G360800 Gossypium raimondii Gorai.007G360800 I 0.708
MDP0000311107 Malus domestica MDP0000311107 N 0.708
AGL18 Vitis vinifera VIT_08s0007g08790 I 0.708
29838.m001690 Ricinus communis 29838.m001690 I 0.708
cassava26340.m1 Manihot esculenta cassava26340.m1 I 0.708
VIT_03s0017g00440 Vitis vinifera VIT_03s0017g00440 I 0.708
Eucgr.I02598 Eucalyptus grandis Eucgr.I02598 I 0.708
MTR_5g066180 Medicago truncatula MTR_5g066180 I 0.708
Pavir.Ab02921 Panicum virgatum Pavir.Ab02921 I 0.702
Gorai.004G169000 Gossypium raimondii Gorai.004G169000 I 0.702
gene29503-v1.0-hybrid Fragaria vesca gene29503-v1.0-hybrid I 0.702
gene26429-v1.0-hybrid Fragaria vesca gene26429-v1.0-hybrid I 0.702
LjSGA_019451.1 Lotus japonicus LjSGA_019451.1 I 0.702
orange1.1g025240m.g Citrus sinensis orange1.1g025240m.g I 0.702
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.702
Pavir.Ib00555 Panicum virgatum Pavir.Ib00555 I 0.702
Gorai.013G055700 Gossypium raimondii Gorai.013G055700 I 0.702
Bo7g025330 Brassica oleracea Bo7g025330 I 0.702
SapurV1A.0027s0860 Salix purpurea SapurV1A.0027s0860 I 0.702
Bo4g149800 Brassica oleracea Bo4g149800 I 0.702
Lus10028214.g Linum usitatissimum Lus10028214.g I 0.702
Thhalv10022995m.g Eutrema salsugineum Thhalv10022995m.g I 0.702
PK08595.1 Cannabis sativa PK08595.1 I 0.702
PK20651.1 Cannabis sativa PK20651.1 I 0.702
Bo1g007520 Brassica oleracea Bo1g007520 I 0.702
Gorai.008G017200 Gossypium raimondii Gorai.008G017200 I 0.702
Gorai.008G112400 Gossypium raimondii Gorai.008G112400 I 0.702
PK11571.1 Cannabis sativa PK11571.1 I 0.702
chr6.CM0055.180.nc Lotus japonicus chr6.CM0055.180.nc I 0.702
cassava45813.m1 Manihot esculenta cassava45813.m1 I 0.702
TCM_024579 Theobroma cacao TCM_024579 I 0.702
Traes_4BL_410DEBFD3 Triticum aestivum Traes_4BL_410DEBFD3 I 0.702
TCM_005818 Theobroma cacao TCM_005818 I 0.702
TCM_000992 Theobroma cacao TCM_000992 I 0.702
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.702
Traes_4DL_67EFB6303 Triticum aestivum Traes_4DL_67EFB6303 I 0.702
VIT_00s0211g00150 Vitis vinifera VIT_00s0211g00150 I 0.702
VIT_15s0024g01860 Vitis vinifera VIT_15s0024g01860 I 0.702
VIT_15s0024g02000 Vitis vinifera VIT_15s0024g02000 I 0.702
VIT_03s0017g00450 Vitis vinifera VIT_03s0017g00450 I 0.702
VIT_00s0729g00010 Vitis vinifera VIT_00s0729g00010 I 0.702
VIT_00s0211g00180 Vitis vinifera VIT_00s0211g00180 I 0.702
Solyc02g091550.1 Solanum lycopersicum Solyc02g091550.1 I 0.702
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I 0.702
AGL15 Populus trichocarpa POPTR_0009s06060 I 0.702
POPTR_0017s07170 Populus trichocarpa POPTR_0017s07170 I 0.702
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.702
PGSC0003DMG401006771 Solanum tuberosum PGSC0003DMG401006771 I 0.702
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.702
MTR_1g041615 Medicago truncatula MTR_1g041615 I 0.702
PRUPE_ppa010758mg Prunus persica PRUPE_ppa010758mg I 0.702
Sb04g028960 Sorghum bicolor Sb04g028960 I 0.702
Si019880m.g Setaria italica Si019880m.g I 0.702
PRUPE_ppa021434mg Prunus persica PRUPE_ppa021434mg I 0.702
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I 0.702
LPERR03G05670 Leersia perrieri LPERR03G05670 I 0.702
ANR1 Vitis vinifera VIT_18s0001g07900 I 0.702
Ca_21060 Cicer arietinum Ca_21060 I 0.702
Aquca_009_00337 Aquilegia coerulea Aquca_009_00337 I 0.702
Bostr.7867s0261 Boechera stricta Bostr.7867s0261 I 0.702
Cucsa.331900 Cucumis sativus Cucsa.331900 I 0.702
Cucsa.327970 Cucumis sativus Cucsa.327970 I 0.702
Cucsa.248870 Cucumis sativus Cucsa.248870 I 0.702
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.702
Ciclev10032519m.g Citrus clementina Ciclev10032519m.g I 0.702
Bra030228 Brassica rapa Bra030228 I 0.702
gene05027-v1.0-hybrid Fragaria vesca gene05027-v1.0-hybrid I 0.702
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.702
BRADI1G72150 Brachypodium distachyon BRADI1G72150 I 0.702
F775_26069 Aegilops tauschii F775_26069 I 0.702
cassava39185.m1 Manihot esculenta cassava39185.m1 I 0.702
cassava33801.m1 Manihot esculenta cassava33801.m1 I 0.702
GLYMA06G10020 Glycine max GLYMA06G10020 I 0.702
Pm004418 Prunus mume Pm004418 I 0.702
Cla017565 Citrullus lanatus Cla017565 I 0.702
GLYMA11G16105 Glycine max GLYMA11G16105 I 0.702
Ca_24925 Cicer arietinum Ca_24925 I 0.702
GLYMA04G10015 Glycine max GLYMA04G10015 I 0.702
Pm016579 Prunus mume Pm016579 I 0.702
GLYMA02G04710 Glycine max GLYMA02G04710 I 0.702
cassava3099.m1 Manihot esculenta cassava3099.m1 I 0.702
cassava21958.m1 Manihot esculenta cassava21958.m1 I 0.702
29804.m001536 Ricinus communis 29804.m001536 I 0.702
Bra011509 Brassica rapa Bra011509 I 0.702