MDP0000259294 (Malus domestica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MDP0000259294 T258713_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.750 0.750
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.750 0.750
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.750 0.750
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000259294 MADS box 13 60

Links

Other MADS box family TFs
Other Malus domestica TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000378412 Malus domestica MDP0000378412 I 0.979
MDP0000322567 Malus domestica MDP0000322567 I 0.958
MDP0000527190 Malus domestica MDP0000527190 I 0.938
PRUPE_ppb017585mg Prunus persica PRUPE_ppb017585mg I 0.896
MDP0000255146 Malus domestica MDP0000255146 I 0.896
Pm004419 Prunus mume Pm004419 I 0.896
PRUPE_ppa011123mg Prunus persica PRUPE_ppa011123mg I 0.875
Pm004417 Prunus mume Pm004417 I 0.875
PRUPE_ppa010758mg Prunus persica PRUPE_ppa010758mg I 0.854
MDP0000277582 Malus domestica MDP0000277582 N 0.854
PRUPE_ppa010822mg Prunus persica PRUPE_ppa010822mg I 0.854
Pm004420 Prunus mume Pm004420 I 0.854
Pm004416 Prunus mume Pm004416 I 0.854
PRUPE_ppa010714mg Prunus persica PRUPE_ppa010714mg I 0.854
PRUPE_ppa018667mg Prunus persica PRUPE_ppa018667mg I 0.833
MDP0000143531 Malus domestica MDP0000143531 N 0.833
Pm004418 Prunus mume Pm004418 I 0.833
Pm004415 Prunus mume Pm004415 I 0.812
MDP0000311107 Malus domestica MDP0000311107 N 0.812
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I 0.792
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I 0.792
Pavir.Ia04527 Panicum virgatum Pavir.Ia04527 I 0.771
ORGLA03G0061100 Oryza glaberrima ORGLA03G0061100 I 0.771
OPUNC03G06100 Oryza punctata OPUNC03G06100 I 0.771
OMERI03G06190 Oryza meridionalis OMERI03G06190 I 0.771
ORUFI03G06210 Oryza rufipogon ORUFI03G06210 I 0.771
ONIVA02G06550 Oryza nivara ONIVA02G06550 I 0.771
OGLUM03G06330 Oryza glumaepatula OGLUM03G06330 I 0.771
Si037358m.g Setaria italica Si037358m.g I 0.771
AGL24 Vitis vinifera VIT_18s0001g07460 I 0.771
MDP0000132226 Malus domestica MDP0000132226 N 0.771
OBART03G06320 Oryza barthii OBART03G06320 I 0.771
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I 0.771
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I 0.771
OS03G0186600 Oryza sativa OS03G0186600 I 0.771
Sb01g044810 Sorghum bicolor Sb01g044810 I 0.771
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I 0.771
GRMZM2G059102 Zea mays GRMZM2G059102 I 0.771
Bra013812 Brassica rapa Bra013812 I 0.771
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I 0.771
Bo1g039080 Brassica oleracea Bo1g039080 I 0.771
BGIOSGA011317 Oryza indica BGIOSGA011317 I 0.771
gene12120-v1.0-hybrid Fragaria vesca gene12120-v1.0-hybrid I 0.766
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.766
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.766
Bo8g101000 Brassica oleracea Bo8g101000 I 0.750
Bo7g109590 Brassica oleracea Bo7g109590 I 0.750
SVP Vitis vinifera VIT_00s0313g00070 I 0.750
Traes_4DL_67EFB6303 Triticum aestivum Traes_4DL_67EFB6303 I 0.750
BRADI1G72150 Brachypodium distachyon BRADI1G72150 I 0.750
Bra038511 Brassica rapa Bra038511 I 0.750
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.750
Bra019221 Brassica rapa Bra019221 I 0.750
SVP Arabidopsis thaliana AT2G22540 D 0.750
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.750
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.750
Ciclev10026457m.g Citrus clementina Ciclev10026457m.g I 0.750
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.750
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.750
TCM_034501 Theobroma cacao TCM_034501 I 0.750
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.750
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.750
AGL24 Arabidopsis thaliana AT4G24540 I 0.750
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.750
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.750
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.750
AGL24 Arabidopsis lyrata fgenesh2_kg.7__1822__AT4G24540.1 I 0.750
GLYMA11G16105 Glycine max GLYMA11G16105 I 0.750
GLYMA12G17721 Glycine max GLYMA12G17721 I 0.750
Pavir.Ib00555 Panicum virgatum Pavir.Ib00555 I 0.750
LPERR03G05670 Leersia perrieri LPERR03G05670 I 0.750
GSMUA_Achr10G19290_001 Musa acuminata GSMUA_Achr10G19290_001 I 0.750
orange1.1g034384m.g Citrus sinensis orange1.1g034384m.g I 0.750
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.750
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.750
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.750
F775_26069 Aegilops tauschii F775_26069 I 0.750
OB11G21480 Oryza brachyantha OB11G21480 I 0.743
PK10580.1 Cannabis sativa PK10580.1 I 0.741
Lus10005325.g Linum usitatissimum Lus10005325.g I 0.729
Gorai.008G092300 Gossypium raimondii Gorai.008G092300 I 0.729
Traes_4BL_410DEBFD3 Triticum aestivum Traes_4BL_410DEBFD3 I 0.729
Solyc01g087990.2 Solanum lycopersicum Solyc01g087990.2 I 0.729
Bostr.7867s0261 Boechera stricta Bostr.7867s0261 I 0.729
MTR_5g066180 Medicago truncatula MTR_5g066180 I 0.729
Eucgr.F00420 Eucalyptus grandis Eucgr.F00420 I 0.729
Carubv10005653m.g Capsella rubella Carubv10005653m.g I 0.729
Cagra.2171s0007 Capsella grandiflora Cagra.2171s0007 I 0.729
TCM_000992 Theobroma cacao TCM_000992 I 0.729
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.729
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.729
GLYMA04G10015 Glycine max GLYMA04G10015 I 0.729
Bo7g025330 Brassica oleracea Bo7g025330 I 0.729
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.729
Bra030228 Brassica rapa Bra030228 I 0.729
GLYMA06G10020 Glycine max GLYMA06G10020 I 0.729
Ca_12416 Cicer arietinum Ca_12416 I 0.729
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.729
Lus10039580.g Linum usitatissimum Lus10039580.g I 0.729
Bo4g149800 Brassica oleracea Bo4g149800 I 0.729
gene03714-v1.0-hybrid Fragaria vesca gene03714-v1.0-hybrid I 0.723
Ciclev10032519m.g Citrus clementina Ciclev10032519m.g I 0.708
Eucgr.G03284 Eucalyptus grandis Eucgr.G03284 I 0.708
SapurV1A.1370s0060 Salix purpurea SapurV1A.1370s0060 I 0.708
Eucgr.F02141 Eucalyptus grandis Eucgr.F02141 I 0.708
SapurV1A.2345s0030 Salix purpurea SapurV1A.2345s0030 I 0.708
Lus10028214.g Linum usitatissimum Lus10028214.g I 0.708
MDP0000209705 Malus domestica MDP0000209705 I 0.708
orange1.1g025240m.g Citrus sinensis orange1.1g025240m.g I 0.708
Gorai.008G112400 Gossypium raimondii Gorai.008G112400 I 0.708
Gorai.004G169000 Gossypium raimondii Gorai.004G169000 I 0.708
gene12119-v1.0-hybrid Fragaria vesca gene12119-v1.0-hybrid I 0.708
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.708
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.708
Pavir.J13837 Panicum virgatum Pavir.J13837 I 0.708
Eucgr.K00207 Eucalyptus grandis Eucgr.K00207 I 0.708
SapurV1A.0228s0130 Salix purpurea SapurV1A.0228s0130 I 0.708
Cla022499 Citrullus lanatus Cla022499 I 0.708
Si017524m.g Setaria italica Si017524m.g I 0.708
Sb04g033930 Sorghum bicolor Sb04g033930 I 0.708
PRUPE_ppa021434mg Prunus persica PRUPE_ppa021434mg I 0.708
PGSC0003DMG401006771 Solanum tuberosum PGSC0003DMG401006771 I 0.708
TCM_005818 Theobroma cacao TCM_005818 I 0.708
Traes_6AL_A93C6F2FC Triticum aestivum Traes_6AL_A93C6F2FC I 0.708
Ca_21060 Cicer arietinum Ca_21060 I 0.708
Ca_19854 Cicer arietinum Ca_19854 I 0.708
Ca_01491 Cicer arietinum Ca_01491 I 0.708
Traes_6DL_D8C9E421C Triticum aestivum Traes_6DL_D8C9E421C I 0.708
ORGLA02G0288600 Oryza glaberrima ORGLA02G0288600 I 0.708
MTR_0003s0590 Medicago truncatula MTR_0003s0590 I 0.708
BRADI3G58220 Brachypodium distachyon BRADI3G58220 I 0.708
Bra008802 Brassica rapa Bra008802 I 0.708
ANR1 Arabidopsis thaliana AT2G14210 I 0.708
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.708
GLYMA02G04710 Glycine max GLYMA02G04710 I 0.708
GRMZM2G370777 Zea mays GRMZM2G370777 I 0.708
LPERR02G27330 Leersia perrieri LPERR02G27330 I 0.708
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I 0.708
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I 0.708
Ciclev10029776m.g Citrus clementina Ciclev10029776m.g I 0.708
Ca_24925 Cicer arietinum Ca_24925 I 0.708
mgf018870m Mimulus guttatus mgf018870m I 0.708
mgf015964m Mimulus guttatus mgf015964m I 0.708
mgf007519m Mimulus guttatus mgf007519m I 0.708
mgb000125m Mimulus guttatus mgb000125m I 0.708
mgf023192m Mimulus guttatus mgf023192m I 0.708
mgf025830m Mimulus guttatus mgf025830m I 0.708
Carubv10015972m.g Capsella rubella Carubv10015972m.g I 0.708
Cagra.3821s0004 Capsella grandiflora Cagra.3821s0004 I 0.708
Bostr.13083s0004 Boechera stricta Bostr.13083s0004 I 0.708
Cla014322 Citrullus lanatus Cla014322 I 0.708
Cucsa.248870 Cucumis sativus Cucsa.248870 I 0.708
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.708
cassava21958.m1 Manihot esculenta cassava21958.m1 I 0.708
Pm016579 Prunus mume Pm016579 I 0.708
A1YJE4_HORVD Hordeum vulgare A1YJE4_HORVD D 0.708
Cla017565 Citrullus lanatus Cla017565 I 0.708
cassava45813.m1 Manihot esculenta cassava45813.m1 I 0.708
cassava39185.m1 Manihot esculenta cassava39185.m1 I 0.708
cassava26340.m1 Manihot esculenta cassava26340.m1 I 0.708
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.707
gene03748-v1.0-hybrid Fragaria vesca gene03748-v1.0-hybrid I 0.702
gene05180-v1.0-hybrid Fragaria vesca gene05180-v1.0-hybrid I 0.702