CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm004420
(
Prunus mume
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Pm004420
T257038_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.750
0.750
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.750
0.750
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.750
0.750
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm004420
MADS box
12
59
KIDNLPARQVTFSKRRRGIFKKAAELSVLCESEVAVVIFSATGKLFDY
Links
Other
MADS box
family TFs
Other
Prunus mume
TFs
159 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pm004417
Prunus mume
Pm004417
I
0.979
PRUPE_ppa018667mg
Prunus persica
PRUPE_ppa018667mg
I
0.979
PRUPE_ppa011123mg
Prunus persica
PRUPE_ppa011123mg
I
0.979
Pm004418
Prunus mume
Pm004418
I
0.958
Pm004416
Prunus mume
Pm004416
I
0.958
PRUPE_ppa010822mg
Prunus persica
PRUPE_ppa010822mg
I
0.958
PRUPE_ppa010758mg
Prunus persica
PRUPE_ppa010758mg
I
0.958
PRUPE_ppb017585mg
Prunus persica
PRUPE_ppb017585mg
I
0.958
Pm004419
Prunus mume
Pm004419
I
0.958
PRUPE_ppa010714mg
Prunus persica
PRUPE_ppa010714mg
I
0.917
Pm004415
Prunus mume
Pm004415
I
0.917
MDP0000322567
Malus domestica
MDP0000322567
I
0.875
MDP0000378412
Malus domestica
MDP0000378412
I
0.875
Eucgr.F00420
Eucalyptus grandis
Eucgr.F00420
I
0.854
MDP0000255146
Malus domestica
MDP0000255146
I
0.854
MDP0000259294
Malus domestica
MDP0000259294
I
0.854
MDP0000527190
Malus domestica
MDP0000527190
I
0.833
SapurV1A.0004s1140
Salix purpurea
SapurV1A.0004s1140
I
0.833
POPTR_0002s10570
Populus trichocarpa
POPTR_0002s10570
I
0.833
gene12120-v1.0-hybrid
Fragaria vesca
gene12120-v1.0-hybrid
I
0.830
AGL24
Vitis vinifera
VIT_18s0001g07460
I
0.812
cassava31071.valid.m1
Manihot esculenta
cassava31071.valid.m1
I
0.812
cassava1567.valid.m1
Manihot esculenta
cassava1567.valid.m1
I
0.812
cassava31070.valid.m1
Manihot esculenta
cassava31070.valid.m1
I
0.812
Cagra.2171s0007
Capsella grandiflora
Cagra.2171s0007
I
0.812
Ciclev10026457m.g
Citrus clementina
Ciclev10026457m.g
I
0.812
Gorai.010G035000
Gossypium raimondii
Gorai.010G035000
I
0.812
Carubv10005653m.g
Capsella rubella
Carubv10005653m.g
I
0.812
orange1.1g034384m.g
Citrus sinensis
orange1.1g034384m.g
I
0.812
TCM_034501
Theobroma cacao
TCM_034501
I
0.812
Gorai.002G142700
Gossypium raimondii
Gorai.002G142700
I
0.812
Cla022499
Citrullus lanatus
Cla022499
I
0.792
PGSC0003DMG400009363
Solanum tuberosum
PGSC0003DMG400009363
I
0.792
PGSC0003DMG400016203
Solanum tuberosum
PGSC0003DMG400016203
I
0.792
Cla014322
Citrullus lanatus
Cla014322
I
0.792
AGL24
Arabidopsis thaliana
AT4G24540
I
0.792
orange1.1g040972m.g
Citrus sinensis
orange1.1g040972m.g
I
0.792
AMTR_s00127p00060060
Amborella trichopoda
AMTR_s00127p00060060
I
0.792
Bo7g109590
Brassica oleracea
Bo7g109590
I
0.792
Bra019221
Brassica rapa
Bra019221
I
0.792
Cucsa.104010
Cucumis sativus
Cucsa.104010
I
0.792
orange1.1g027190m.g
Citrus sinensis
orange1.1g027190m.g
I
0.792
Gorai.005G225500
Gossypium raimondii
Gorai.005G225500
I
0.792
Solyc11g010570.1
Solanum lycopersicum
Solyc11g010570.1
I
0.792
AGL24
Arabidopsis lyrata
fgenesh2_kg.7__1822__AT4G24540.1
I
0.792
TCM_000992
Theobroma cacao
TCM_000992
I
0.771
TCM_007378
Theobroma cacao
TCM_007378
I
0.771
Aquca_015_00177
Aquilegia coerulea
Aquca_015_00177
I
0.771
MDP0000277582
Malus domestica
MDP0000277582
N
0.771
Thhalv10026757m.g
Eutrema salsugineum
Thhalv10026757m.g
I
0.771
LjT38P01.180.nd
Lotus japonicus
LjT38P01.180.nd
I
0.771
evm.TU.supercontig_21.11
Carica papaya
evm.TU.supercontig_21.11
I
0.771
Bostr.7867s0261
Boechera stricta
Bostr.7867s0261
I
0.771
Cucsa.160640
Cucumis sativus
Cucsa.160640
I
0.771
mgf015964m
Mimulus guttatus
mgf015964m
I
0.771
cassava42879.valid.m1
Manihot esculenta
cassava42879.valid.m1
I
0.771
Ca_12416
Cicer arietinum
Ca_12416
I
0.771
GLYMA06G10020
Glycine max
GLYMA06G10020
I
0.771
PRUPE_ppa022274mg
Prunus persica
PRUPE_ppa022274mg
I
0.771
GLYMA01G02880
Glycine max
GLYMA01G02880
I
0.771
GLYMA04G10015
Glycine max
GLYMA04G10015
I
0.771
Bo1g039080
Brassica oleracea
Bo1g039080
I
0.771
Bra013812
Brassica rapa
Bra013812
I
0.771
SVP
Arabidopsis thaliana
AT2G22540
D
0.771
MTR_5g066180
Medicago truncatula
MTR_5g066180
I
0.771
gene05180-v1.0-hybrid
Fragaria vesca
gene05180-v1.0-hybrid
I
0.766
Ciclev10029776m.g
Citrus clementina
Ciclev10029776m.g
I
0.750
evm.TU.supercontig_55.31
Carica papaya
evm.TU.supercontig_55.31
I
0.750
gene03748-v1.0-hybrid
Fragaria vesca
gene03748-v1.0-hybrid
I
0.750
Carubv10023941m.g
Capsella rubella
Carubv10023941m.g
I
0.750
OGLUM03G06330
Oryza glumaepatula
OGLUM03G06330
I
0.750
Bostr.19427s0024
Boechera stricta
Bostr.19427s0024
I
0.750
GSMUA_Achr3G06800_001
Musa acuminata
GSMUA_Achr3G06800_001
I
0.750
OBART03G06320
Oryza barthii
OBART03G06320
I
0.750
GRMZM2G059102
Zea mays
GRMZM2G059102
I
0.750
GSMUA_Achr9G15180_001
Musa acuminata
GSMUA_Achr9G15180_001
I
0.750
Lus10025719.g
Linum usitatissimum
Lus10025719.g
I
0.750
SapurV1A.0187s0010
Salix purpurea
SapurV1A.0187s0010
I
0.750
Pavir.Ia04527
Panicum virgatum
Pavir.Ia04527
I
0.750
SapurV1A.1777s0020
Salix purpurea
SapurV1A.1777s0020
I
0.750
Thhalv10000308m.g
Eutrema salsugineum
Thhalv10000308m.g
I
0.750
BGIOSGA011317
Oryza indica
BGIOSGA011317
I
0.750
Bo8g101000
Brassica oleracea
Bo8g101000
I
0.750
Bra038511
Brassica rapa
Bra038511
I
0.750
Lus10035942.g
Linum usitatissimum
Lus10035942.g
I
0.750
29838.m001690
Ricinus communis
29838.m001690
I
0.750
MDP0000143531
Malus domestica
MDP0000143531
N
0.750
MDP0000209705
Malus domestica
MDP0000209705
I
0.750
SVP
Arabidopsis lyrata
fgenesh2_kg.4__174__AT2G22540.1
I
0.750
GLYMA02G04710
Glycine max
GLYMA02G04710
I
0.750
Cagra.1080s0011
Capsella grandiflora
Cagra.1080s0011
I
0.750
ORUFI03G06210
Oryza rufipogon
ORUFI03G06210
I
0.750
POPTR_0007s03270
Populus trichocarpa
POPTR_0007s03270
I
0.750
OPUNC03G06100
Oryza punctata
OPUNC03G06100
I
0.750
Pm002166
Prunus mume
Pm002166
I
0.750
OS03G0186600
Oryza sativa
OS03G0186600
I
0.750
Pm022002
Prunus mume
Pm022002
I
0.750
Ca_21060
Cicer arietinum
Ca_21060
I
0.750
SVP
Vitis vinifera
VIT_00s0313g00070
I
0.750
POPTR_0007s03290
Populus trichocarpa
POPTR_0007s03290
I
0.750
ORGLA03G0061100
Oryza glaberrima
ORGLA03G0061100
I
0.750
Si037358m.g
Setaria italica
Si037358m.g
I
0.750
Sb01g044810
Sorghum bicolor
Sb01g044810
I
0.750
OMERI03G06190
Oryza meridionalis
OMERI03G06190
I
0.750
PRUPE_ppa011063mg
Prunus persica
PRUPE_ppa011063mg
I
0.750
ONIVA02G06550
Oryza nivara
ONIVA02G06550
I
0.750
POPTR_0007s14300
Populus trichocarpa
POPTR_0007s14300
I
0.750
gene03714-v1.0-hybrid
Fragaria vesca
gene03714-v1.0-hybrid
I
0.745
Gorai.008G092300
Gossypium raimondii
Gorai.008G092300
I
0.729
Gorai.008G017200
Gossypium raimondii
Gorai.008G017200
I
0.729
Gorai.013G055700
Gossypium raimondii
Gorai.013G055700
I
0.729
gene12119-v1.0-hybrid
Fragaria vesca
gene12119-v1.0-hybrid
I
0.729
gene20808-v1.0-hybrid
Fragaria vesca
gene20808-v1.0-hybrid
I
0.729
VIT_03s0017g00360
Vitis vinifera
VIT_03s0017g00360
I
0.729
MDP0000311107
Malus domestica
MDP0000311107
N
0.729
Solyc01g087990.2
Solanum lycopersicum
Solyc01g087990.2
I
0.729
Pavir.Ib00555
Panicum virgatum
Pavir.Ib00555
I
0.729
Bo4g149800
Brassica oleracea
Bo4g149800
I
0.729
Bra030228
Brassica rapa
Bra030228
I
0.729
MDP0000233948
Malus domestica
MDP0000233948
I
0.729
Solyc01g105800.2
Solanum lycopersicum
Solyc01g105800.2
I
0.729
VIT_15s0107g00120
Vitis vinifera
VIT_15s0107g00120
I
0.729
GLYMA15G06302
Glycine max
GLYMA15G06302
I
0.729
mgf018870m
Mimulus guttatus
mgf018870m
I
0.729
PGSC0003DMG400033570
Solanum tuberosum
PGSC0003DMG400033570
I
0.729
MTR_5g032150
Medicago truncatula
MTR_5g032150
I
0.729
MTR_5g032520
Medicago truncatula
MTR_5g032520
I
0.729
Ca_01491
Cicer arietinum
Ca_01491
I
0.729
LPERR03G05670
Leersia perrieri
LPERR03G05670
I
0.729
Eucgr.F02141
Eucalyptus grandis
Eucgr.F02141
I
0.729
OB11G21480
Oryza brachyantha
OB11G21480
I
0.714
mgf025830m
Mimulus guttatus
mgf025830m
I
0.708
Traes_4DL_67EFB6303
Triticum aestivum
Traes_4DL_67EFB6303
I
0.708
Traes_4BL_410DEBFD3
Triticum aestivum
Traes_4BL_410DEBFD3
I
0.708
mgf023192m
Mimulus guttatus
mgf023192m
I
0.708
POPTR_0017s07170
Populus trichocarpa
POPTR_0017s07170
I
0.708
Cucsa.331840
Cucumis sativus
Cucsa.331840
I
0.708
PK20651.1
Cannabis sativa
PK20651.1
I
0.708
SapurV1A.0463s0130
Salix purpurea
SapurV1A.0463s0130
I
0.708
e_gw1.55.13.1
Physcomitrella patens
e_gw1.55.13.1
I
0.708
BRADI1G72150
Brachypodium distachyon
BRADI1G72150
I
0.708
fgenesh1_pg.scaffold_118000119
Physcomitrella patens
fgenesh1_pg.scaffold_118000119
I
0.708
F775_26069
Aegilops tauschii
F775_26069
I
0.708
Eucgr.I00556
Eucalyptus grandis
Eucgr.I00556
I
0.708
Eucgr.F02145
Eucalyptus grandis
Eucgr.F02145
I
0.708
GLYMA02G33040
Glycine max
GLYMA02G33040
I
0.708
VIT_15s0024g02000
Vitis vinifera
VIT_15s0024g02000
I
0.708
PGSC0003DMG401006771
Solanum tuberosum
PGSC0003DMG401006771
I
0.708
GLYMA12G17721
Glycine max
GLYMA12G17721
I
0.708
GSMUA_Achr10G19290_001
Musa acuminata
GSMUA_Achr10G19290_001
I
0.708
VIT_03s0167g00100
Vitis vinifera
VIT_03s0167g00100
I
0.708
gene05027-v1.0-hybrid
Fragaria vesca
gene05027-v1.0-hybrid
I
0.708
VIT_03s0017g00450
Vitis vinifera
VIT_03s0017g00450
I
0.708
GLYMA15G06314
Glycine max
GLYMA15G06314
I
0.708
VIT_00s0729g00010
Vitis vinifera
VIT_00s0729g00010
I
0.708
VIT_03s0017g00440
Vitis vinifera
VIT_03s0017g00440
I
0.708
Traes_7DS_366A869CF
Triticum aestivum
Traes_7DS_366A869CF
I
0.707
PK10580.1
Cannabis sativa
PK10580.1
I
0.704
gene30741-v1.0-hybrid
Fragaria vesca
gene30741-v1.0-hybrid
I
0.702