LCUP011663 (Lucilia cuprina)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 LCUP011663 T259225_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.931 0.931
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.931 0.931
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.897 0.897
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.897 0.897
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.897 0.897
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.897 0.897
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.897 0.897
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.897 0.897
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.897 0.897
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.897 0.897
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.897 0.897
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.897 0.897
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.897 0.897
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.897 0.897
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.897 0.897
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.897 0.897
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.897 0.897
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.897 0.897
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.897 0.897
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.897 0.897
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.897 0.897
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.897 0.897
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.897 0.897
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.897 0.897
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.897 0.897
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.862 0.862
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.759 0.759
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.759 0.759
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.759 0.759
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.759 0.759
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.759 0.759
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.759 0.759
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LCUP011663-PA MADS box 1 29

Links

Other MADS box family TFs
Other Lucilia cuprina TFs

247 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cmyd_10000491 Chelonia mydas Cmyd_10000491 I 0.000
ENSACAG00000022533 Anolis carolinensis ENSACAG00000022533 I 0.000
ENSAMEG00000016851 Ailuropoda melanoleuca ENSAMEG00000016851 I 0.000
TP53 Bos taurus ENSBTAG00000001069 I 0.000
ENSBTAP00000001420-D1 Bos grunniens ENSBTAP00000001420-D1 I 0.000
TP53 Canis familiaris ENSCAFG00000016714 I 0.000
TP53 Callithrix jacchus ENSCJAG00000014978 I 0.000
TP53 Cavia porcellus ENSCPOG00000014252 I 0.000
ENSCSAG00000011345 Chlorocebus sabaeus ENSCSAG00000011345 I 0.000
tp53 Danio rerio ENSDARG00000035559 I 0.000
TP53 Dasypus novemcinctus ENSDNOG00000005252 I 0.000
TP53 Equus caballus ENSECAG00000008126 I 0.000
TP53 Erinaceus europaeus ENSEEUG00000014573 I 0.000
ENSETEG00000008987 Echinops telfairi ENSETEG00000008987 I 0.000
TP53 Felis catus ENSFCAG00000009623 I 0.000
TP53 Homo sapiens ENSG00000141510 D 0.000
TP53 Gorilla gorilla ENSGGOG00000009786 I 0.000
ENSLAFG00000007483 Loxodonta africana ENSLAFG00000007483 I 0.000
ENSLAFG00000028299 Loxodonta africana ENSLAFG00000028299 I 0.000
ENSLAFG00000030555 Loxodonta africana ENSLAFG00000030555 I 0.000
ENSLAFG00000030880 Loxodonta africana ENSLAFG00000030880 I 0.000
ENSLAFG00000032042 Loxodonta africana ENSLAFG00000032042 I 0.000
ENSMEUG00000013135 Macropus eugenii ENSMEUG00000013135 I 0.000
TP53 Microcebus murinus ENSMICG00000014853 I 0.000
ENSMLUG00000025140 Myotis lucifugus ENSMLUG00000025140 I 0.000
TP53 Macaca mulatta ENSMMUG00000008639 I 0.000
ENSMPUG00000009017 Mustela putorius furo ENSMPUG00000009017 I 0.000
Trp53 Mus musculus ENSMUSG00000059552 D 0.000
ENSNLEG00000009730 Nomascus leucogenys ENSNLEG00000009730 I 0.000
ENSOARG00000015571 Ovis aries ENSOARG00000015571 I 0.000
ENSOCUG00000001138 Oryctolagus cuniculus ENSOCUG00000001138 I 0.000
ENSOCUG00000022109 Oryctolagus cuniculus ENSOCUG00000022109 I 0.000
TP53 Otolemur garnettii ENSOGAG00000016871 I 0.000
TP53 Ochotona princeps ENSOPRG00000006441 I 0.000
ENSP00000269305 Macaca fascicularis ENSP00000269305 I 0.000
ENSPANG00000024061 Papio anubis ENSPANG00000024061 I 0.000
TP53 Procavia capensis ENSPCAG00000012725 I 0.000
ENSPPYG00000007934 Pongo abelii ENSPPYG00000007934 I 0.000
ENSPSIG00000013302 Pelodiscus sinensis ENSPSIG00000013302 I 0.000
TP53 Pan troglodytes ENSPTRG00000008703 I 0.000
Tp53 Rattus norvegicus ENSRNOG00000010756 I 0.000
LOC100910954 Rattus norvegicus ENSRNOG00000046657 I 0.000
TP53 Sorex araneus ENSSARG00000006206 I 0.000
ENSSHAG00000015510 Sarcophilus harrisii ENSSHAG00000015510 I 0.000
TP53 Sus scrofa ENSSSCG00000017950 I 0.000
ENSSTOG00000022774 Ictidomys tridecemlineatus ENSSTOG00000022774 I 0.000
TP53 Tursiops truncatus ENSTTRG00000010250 I 0.000
Myotis_brandtii_TP53_10021059 Myotis brandtii Myotis_brandtii_TP53_10021059 I 0.000
Pvit_02042 Pogona vitticeps Pvit_02042 N 0.000