Pavir.Ia01134 (Panicum virgatum)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 Pavir.Ia01134 T261601_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia01134.1.p MBD 85 158
Pavir.Ia01134.2.p MBD 85 159

Links

Other MBD family TFs
Other Panicum virgatum TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA035814 Oryza indica BGIOSGA035814 N 0.775
BRADI4G21540 Brachypodium distachyon BRADI4G21540 N 0.718
F775_07994 Aegilops tauschii F775_07994 N 0.704
GRMZM2G157470 Zea mays GRMZM2G157470 N 0.901
LPERR12G16300 Leersia perrieri LPERR12G16300 N 0.771
OB12G26010 Oryza brachyantha OB12G26010 N 0.771
OBART12G19140 Oryza barthii OBART12G19140 N 0.775
OGLUM12G20810 Oryza glumaepatula OGLUM12G20810 N 0.775
OMERI12G13490 Oryza meridionalis OMERI12G13490 N 0.775
ONIVA02G25900 Oryza nivara ONIVA02G25900 N 0.775
OPUNC12G17310 Oryza punctata OPUNC12G17310 N 0.761
ORGLA12G0164400 Oryza glaberrima ORGLA12G0164400 N 0.775
ORUFI12G21360 Oryza rufipogon ORUFI12G21360 N 0.775
OS12G0620400 Oryza sativa OS12G0620400 N 0.775
Pavir.Ca02859 Panicum virgatum Pavir.Ca02859 N 0.732
Pavir.Ib04134 Panicum virgatum Pavir.Ib04134 N 0.986
Pavir.J20491 Panicum virgatum Pavir.J20491 N 0.704
Pavir.J29994 Panicum virgatum Pavir.J29994 N 0.704
Sb01g013320 Sorghum bicolor Sb01g013320 N 0.845
Si035862m.g Setaria italica Si035862m.g N 0.986
Traes_5BL_8F2E81CCA Triticum aestivum Traes_5BL_8F2E81CCA N 0.714
VIT_11s0016g05580 Vitis vinifera VIT_11s0016g05580 N 0.704