ORGLA02G0242600 (Oryza glaberrima)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 ORGLA02G0242600 T276670_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.774 0.804
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.774 0.804
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.774 0.804
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.771 0.804
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.771 0.804
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.771 0.804
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.771 0.804
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.771 0.804
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.766 0.783
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.753 0.804
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.753 0.804
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.744 0.783
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.698 0.739
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.698 0.739
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.671 0.630
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.671 0.630
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.671 0.630
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA02G0242600.1 Myb 61 106

Links

Other Myb/SANT family TFs
Other Oryza glaberrima TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R008132 Calypte anna Aan_R008132 I
Afo_R005396 Aptenodytes forsteri Afo_R005396 I
Brh_R008630 Buceros rhinoceros Brh_R008630 I
Cmyd_10021612 Chelonia mydas Cmyd_10021612 I
ZBED1 Anolis carolinensis ENSACAG00000023513 I
ENSAMEG00000018666 Ailuropoda melanoleuca ENSAMEG00000018666 I
ENSAPLG00000011428 Anas platyrhynchos ENSAPLG00000011428 I
ZBED1 Bos taurus ENSBTAG00000024641 I
ENSCSAG00000019527 Chlorocebus sabaeus ENSCSAG00000019527 I
ZBED1 Dasypus novemcinctus ENSDNOG00000012869 I
ENSFALG00000015033 Ficedula albicollis ENSFALG00000015033 I
ZBED1 Felis catus ENSFCAG00000012522 I
ZBED1 Homo sapiens ENSG00000214717 D
ENSGALG00000028601 Gallus gallus ENSGALG00000028601 I
ZBED1 Gorilla gorilla ENSGGOG00000011706 I
ENSLACG00000011306 Latimeria chalumnae ENSLACG00000011306 I
ZBED1 Loxodonta africana ENSLAFG00000013332 I
ENSLOCG00000017415 Lepisosteus oculatus ENSLOCG00000017415 I
ZBED1 Meleagris gallopavo ENSMGAG00000015483 I
ZBED1 Macaca mulatta ENSMMUG00000007514 I
ENSNLEG00000018727 Nomascus leucogenys ENSNLEG00000018727 I
ENSOARG00000008137 Ovis aries ENSOARG00000008137 I
ZBED1 Oryctolagus cuniculus ENSOCUG00000023740 I
ENSONIG00000007347 Oreochromis niloticus ENSONIG00000007347 I
ENSP00000370620 Macaca fascicularis ENSP00000370620 I
ENSP00000370620-D1 Bos grunniens ENSP00000370620-D1 I
ENSPANG00000011132 Papio anubis ENSPANG00000011132 I
ENSPPYG00000020088 Pongo abelii ENSPPYG00000020088 I
ENSPSIG00000002047 Pelodiscus sinensis ENSPSIG00000002047 I
ENSSHAG00000012608 Sarcophilus harrisii ENSSHAG00000012608 I
Gfo_R009655 Geospiza fortis Gfo_R009655 I
Pvit_08935 Pogona vitticeps Pvit_08935 I
Tal_R000939 Tyto alba Tal_R000939 I
XP_002933665 Xenopus tropicalis XP_002933665 I
XP_002941050 Xenopus tropicalis XP_002941050 I