Solyc01g057910.2 (Solanum lycopersicum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Solyc01g057910.2 T280026_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.809 0.903
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.795 0.849
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.795 0.849
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.741 0.785
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.741 0.785
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.693 0.839
MYB57
M01072_2.00 		Arabidopsis thaliana
RCCTAAYT
ARTTAGGY		 PBM
Sullivan et al.(2014)
pTH9748 		0.679 0.753
MYB57
M07059_2.00 		Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR		 Dap-seq
OMalley et al.(2016)
MYB57_col_a 		0.679 0.753
MYB57
M07060_2.00 		Arabidopsis thaliana
ACCTAAY
RTTAGGT		 Dap-seq
OMalley et al.(2016)
MYB57_colamp_a 		0.679 0.753
MYB24
M02311_2.00 		Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY		 PBM
Weirauch et al.(2014)
pTH8662 		0.669 0.806
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.668 0.667
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc01g057910.2.1 Myb 27 74
Solyc01g057910.2.1 Myb 80 125

Links

Other Myb/SANT family TFs
Other Solanum lycopersicum TFs

544 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28779.m000140 Ricinus communis 28779.m000140 I
Aquca_027_00443 Aquilegia coerulea Aquca_027_00443 I
AT1G19490 Arabidopsis thaliana AT1G19490 D
Bo5g027510 Brassica oleracea Bo5g027510 I
Bostr.7128s0552 Boechera stricta Bostr.7128s0552 I
Bra025743 Brassica rapa Bra025743 I
Cagra.1961s0053 Capsella grandiflora Cagra.1961s0053 I
Carubv10011417m.g Capsella rubella Carubv10011417m.g I
cassava31755.valid.m1 Manihot esculenta cassava31755.valid.m1 I
Ciclev10013541m.g Citrus clementina Ciclev10013541m.g I
Cla017983 Citrullus lanatus Cla017983 I
Cucsa.240980 Cucumis sativus Cucsa.240980 I
evm.TU.supercontig_5.51 Carica papaya evm.TU.supercontig_5.51 I
gene30252-v1.0-hybrid Fragaria vesca gene30252-v1.0-hybrid I
GLYMA03G35101 Glycine max GLYMA03G35101 I
GLYMA19G37801 Glycine max GLYMA19G37801 I
Gorai.009G405400 Gossypium raimondii Gorai.009G405400 I
Lus10003255.g Linum usitatissimum Lus10003255.g I
Lus10035597.g Linum usitatissimum Lus10035597.g I
MDP0000147745 Malus domestica MDP0000147745 I
MTR_7g104190 Medicago truncatula MTR_7g104190 I
PK09783.1 Cannabis sativa PK09783.1 I
POPTR_0006s11550 Populus trichocarpa POPTR_0006s11550 I
PRUPE_ppa003901mg Prunus persica PRUPE_ppa003901mg I
SapurV1A.0208s0130 Salix purpurea SapurV1A.0208s0130 I
TCM_022516 Theobroma cacao TCM_022516 I
Thhalv10009681m.g Eutrema salsugineum Thhalv10009681m.g I
VIT_08s0007g03640 Vitis vinifera VIT_08s0007g03640 I