Cagra.9553s0006 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.9553s0006 T286197_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.909 1.000
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.763 0.839
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.763 0.839
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.709 0.774
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.709 0.774
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.674 0.806
MYB57
M01072_2.00 		Arabidopsis thaliana
RCCTAAYT
ARTTAGGY		 PBM
Sullivan et al.(2014)
pTH9748 		0.668 0.731
MYB57
M07059_2.00 		Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR		 Dap-seq
OMalley et al.(2016)
MYB57_col_a 		0.668 0.731
MYB57
M07060_2.00 		Arabidopsis thaliana
ACCTAAY
RTTAGGT		 Dap-seq
OMalley et al.(2016)
MYB57_colamp_a 		0.668 0.731
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.668 0.656
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.9553s0006.1.p Myb 21 68
Cagra.9553s0006.1.p Myb 74 119

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

540 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27950.m000105 Ricinus communis 27950.m000105 I
28226.m000851 Ricinus communis 28226.m000851 I
28649.m000212 Ricinus communis 28649.m000212 I
30170.m014236 Ricinus communis 30170.m014236 I
CUC2 Arabidopsis lyrata Al_scaffold_0008_1815 I
AMTR_s00010p00266320 Amborella trichopoda AMTR_s00010p00266320 I
AMTR_s00022p00160350 Amborella trichopoda AMTR_s00022p00160350 I
AMTR_s00025p00174590 Amborella trichopoda AMTR_s00025p00174590 I
AMTR_s00058p00136280 Amborella trichopoda AMTR_s00058p00136280 I
Aquca_002_00662 Aquilegia coerulea Aquca_002_00662 I
Aquca_007_00948 Aquilegia coerulea Aquca_007_00948 I
Aquca_015_00272 Aquilegia coerulea Aquca_015_00272 I
Aquca_018_00116 Aquilegia coerulea Aquca_018_00116 I
Aquca_033_00035 Aquilegia coerulea Aquca_033_00035 I
NAC079 Arabidopsis thaliana AT5G07680 D
NAC098 Arabidopsis thaliana AT5G53950 D
NAC100 Arabidopsis thaliana AT5G61430 D
BGIOSGA022861 Oryza indica BGIOSGA022861 I
BGIOSGA026695 Oryza indica BGIOSGA026695 I
BGIOSGA029508 Oryza indica BGIOSGA029508 I
Bo00578s090 Brassica oleracea Bo00578s090 I
Bo2g043280 Brassica oleracea Bo2g043280 I
Bo2g161570 Brassica oleracea Bo2g161570 I
Bo6g062160 Brassica oleracea Bo6g062160 I
Bo6g120460 Brassica oleracea Bo6g120460 I
Bo7g098620 Brassica oleracea Bo7g098620 I
Bo9g113820 Brassica oleracea Bo9g113820 I
Bostr.13129s0198 Boechera stricta Bostr.13129s0198 I
Bostr.26833s0095 Boechera stricta Bostr.26833s0095 I
Bostr.26833s0880 Boechera stricta Bostr.26833s0880 I
Bra003023 Brassica rapa Bra003023 I
Bra008259 Brassica rapa Bra008259 I
Bra012960 Brassica rapa Bra012960 I
Bra015750 Brassica rapa Bra015750 I
Bra022685 Brassica rapa Bra022685 I
Bra025658 Brassica rapa Bra025658 I
Bra029313 Brassica rapa Bra029313 I
BRADI4G34157 Brachypodium distachyon BRADI4G34157 I
Cagra.0542s0037 Capsella grandiflora Cagra.0542s0037 I
Cagra.2925s0018 Capsella grandiflora Cagra.2925s0018 I
Cagra.4622s0005 Capsella grandiflora Cagra.4622s0005 I
Carubv10001372m.g Capsella rubella Carubv10001372m.g I
Carubv10005201m.g Capsella rubella Carubv10005201m.g I
Carubv10026752m.g Capsella rubella Carubv10026752m.g I
Carubv10028330m.g Capsella rubella Carubv10028330m.g I
cassava1757.valid.m1 Manihot esculenta cassava1757.valid.m1 I
cassava1758.valid.m1 Manihot esculenta cassava1758.valid.m1 I
cassava18338.valid.m1 Manihot esculenta cassava18338.valid.m1 I
cassava21054.m1 Manihot esculenta cassava21054.m1 I
cassava21580.m1 Manihot esculenta cassava21580.m1 I
cassava361.valid.m1 Manihot esculenta cassava361.valid.m1 I
cassava41252.m1 Manihot esculenta cassava41252.m1 I
cassava44869.m1 Manihot esculenta cassava44869.m1 I
Ca_11021 Cicer arietinum Ca_11021 I
Ca_22370 Cicer arietinum Ca_22370 I
Ca_22532 Cicer arietinum Ca_22532 I
chr1.LjT35C22.60.nc Lotus japonicus chr1.LjT35C22.60.nc I
chr3.CM0282.730.nc Lotus japonicus chr3.CM0282.730.nc I
chr4.CM0087.800.nd Lotus japonicus chr4.CM0087.800.nd I
Ciclev10001403m.g Citrus clementina Ciclev10001403m.g I
Ciclev10008619m.g Citrus clementina Ciclev10008619m.g I
Ciclev10008885m.g Citrus clementina Ciclev10008885m.g I
Ciclev10012093m.g Citrus clementina Ciclev10012093m.g I
Cla017258 Citrullus lanatus Cla017258 I
Cla023717 Citrullus lanatus Cla023717 I
Cla023834 Citrullus lanatus Cla023834 I
Cucsa.122890 Cucumis sativus Cucsa.122890 I
Cucsa.272370 Cucumis sativus Cucsa.272370 I
Cucsa.338700 Cucumis sativus Cucsa.338700 I
Eucgr.B00529 Eucalyptus grandis Eucgr.B00529 I
Eucgr.C02105 Eucalyptus grandis Eucgr.C02105 I
Eucgr.F03588 Eucalyptus grandis Eucgr.F03588 I
Eucgr.I01958 Eucalyptus grandis Eucgr.I01958 I
evm.TU.supercontig_111.22 Carica papaya evm.TU.supercontig_111.22 I
evm.TU.supercontig_131.88 Carica papaya evm.TU.supercontig_131.88 I
evm.TU.supercontig_14.101 Carica papaya evm.TU.supercontig_14.101 I
evm.TU.supercontig_244.7 Carica papaya evm.TU.supercontig_244.7 I
evm.TU.supercontig_286.12 Carica papaya evm.TU.supercontig_286.12 I
e_gw1.159.34.1 Physcomitrella patens e_gw1.159.34.1 D
F775_20638 Aegilops tauschii F775_20638 I
F775_52293 Aegilops tauschii F775_52293 I
ANAC080 Arabidopsis lyrata fgenesh2_kg.6__736__AT5G07680.1 D
ANAC100 Arabidopsis lyrata fgenesh2_kg.8__2118__AT5G61430.1 D
gene00971-v1.0-hybrid Fragaria vesca gene00971-v1.0-hybrid I
gene04424-v1.0-hybrid Fragaria vesca gene04424-v1.0-hybrid I
gene08765-v1.0-hybrid Fragaria vesca gene08765-v1.0-hybrid I
gene31474-v1.0-hybrid Fragaria vesca gene31474-v1.0-hybrid I
GLYMA04G08320 Glycine max GLYMA04G08320 I
GLYMA04G33270 Glycine max GLYMA04G33270 I
GLYMA05G00930 Glycine max GLYMA05G00930 I
GLYMA06G08440 Glycine max GLYMA06G08440 I
GLYMA06G21020 Glycine max GLYMA06G21020 I
GLYMA06G35660 Glycine max GLYMA06G35660 I
GLYMA09G37050 Glycine max GLYMA09G37050 I
GLYMA12G26190 Glycine max GLYMA12G26190 I
GLYMA12G35530 Glycine max GLYMA12G35530 I
GLYMA13G05540 Glycine max GLYMA13G05540 I
GLYMA13G34950 Glycine max GLYMA13G34950 I
GLYMA14G20276 Glycine max GLYMA14G20276 I
GLYMA17G10970 Glycine max GLYMA17G10970 I
GLYMA18G49620 Glycine max GLYMA18G49620 I
GLYMA19G02850 Glycine max GLYMA19G02850 I
Gorai.002G067300 Gossypium raimondii Gorai.002G067300 I
Gorai.007G079900 Gossypium raimondii Gorai.007G079900 I
Gorai.007G323900 Gossypium raimondii Gorai.007G323900 I
Gorai.008G194400 Gossypium raimondii Gorai.008G194400 I
Gorai.009G186000 Gossypium raimondii Gorai.009G186000 I
Gorai.010G124100 Gossypium raimondii Gorai.010G124100 I
Gorai.013G171300 Gossypium raimondii Gorai.013G171300 I
GRMZM2G008374 Zea mays GRMZM2G008374 I
GRMZM2G386163 Zea mays GRMZM2G386163 I
GRMZM2G393433 Zea mays GRMZM2G393433 I
GRMZM2G430522 Zea mays GRMZM2G430522 I
GSMUA_Achr10G22350_001 Musa acuminata GSMUA_Achr10G22350_001 I
GSMUA_Achr10G26180_001 Musa acuminata GSMUA_Achr10G26180_001 I
GSMUA_Achr6G01770_001 Musa acuminata GSMUA_Achr6G01770_001 I
GSMUA_Achr7G19680_001 Musa acuminata GSMUA_Achr7G19680_001 I
GSMUA_Achr8G24680_001 Musa acuminata GSMUA_Achr8G24680_001 I
GSMUA_Achr9G20090_001 Musa acuminata GSMUA_Achr9G20090_001 I
LjSGA_071377.1 Lotus japonicus LjSGA_071377.1 I
LPERR06G12840 Leersia perrieri LPERR06G12840 I
LPERR08G17020 Leersia perrieri LPERR08G17020 I
LPERR09G11330 Leersia perrieri LPERR09G11330 I
Lus10005537.g Linum usitatissimum Lus10005537.g I
Lus10013205.g Linum usitatissimum Lus10013205.g I
Lus10030723.g Linum usitatissimum Lus10030723.g I
Lus10041924.g Linum usitatissimum Lus10041924.g I
MDP0000135860 Malus domestica MDP0000135860 I
MDP0000232008 Malus domestica MDP0000232008 I
MDP0000276765 Malus domestica MDP0000276765 I
MDP0000310981 Malus domestica MDP0000310981 I
MDP0000690168 Malus domestica MDP0000690168 I
mgf003818m Mimulus guttatus mgf003818m I
mgf018675m Mimulus guttatus mgf018675m I
mgf023466m Mimulus guttatus mgf023466m I
mgf025158m Mimulus guttatus mgf025158m I
MLOC_13932 Hordeum vulgare MLOC_13932 I
MLOC_65286 Hordeum vulgare MLOC_65286 I
MLOC_68185 Hordeum vulgare MLOC_68185 I
MTR_2g078700 Medicago truncatula MTR_2g078700 I
MTR_3g435150 Medicago truncatula MTR_3g435150 I
MTR_6g012670 Medicago truncatula MTR_6g012670 I
OB04G22290 Oryza brachyantha OB04G22290 I
OB06G22100 Oryza brachyantha OB06G22100 I
OB08G27000 Oryza brachyantha OB08G27000 I
OBART06G13940 Oryza barthii OBART06G13940 I
OBART09G15220 Oryza barthii OBART09G15220 I
OGLUM06G14810 Oryza glumaepatula OGLUM06G14810 I
OGLUM08G21360 Oryza glumaepatula OGLUM08G21360 I
OGLUM09G15820 Oryza glumaepatula OGLUM09G15820 I
OLONG_009674 Oryza longistaminata OLONG_009674 I
OLONG_019251 Oryza longistaminata OLONG_019251 I
OMERI07G04410 Oryza meridionalis OMERI07G04410 I
ONIVA03G33370 Oryza nivara ONIVA03G33370 I
ONIVA08G22710 Oryza nivara ONIVA08G22710 I
ONIVA09G15800 Oryza nivara ONIVA09G15800 I
OPUNC06G13130 Oryza punctata OPUNC06G13130 I
OPUNC08G18240 Oryza punctata OPUNC08G18240 I
OPUNC09G13640 Oryza punctata OPUNC09G13640 I
orange1.1g016283m.g Citrus sinensis orange1.1g016283m.g I
orange1.1g018950m.g Citrus sinensis orange1.1g018950m.g I
orange1.1g037591m.g Citrus sinensis orange1.1g037591m.g I
orange1.1g047710m.g Citrus sinensis orange1.1g047710m.g I
ORGLA06G0124600 Oryza glaberrima ORGLA06G0124600 I
ORGLA08G0177600 Oryza glaberrima ORGLA08G0177600 I
ORGLA09G0117400 Oryza glaberrima ORGLA09G0117400 I
ORUFI06G14810 Oryza rufipogon ORUFI06G14810 I
ORUFI08G22550 Oryza rufipogon ORUFI08G22550 I
ORUFI09G16430 Oryza rufipogon ORUFI09G16430 I
OS06G0344900 Oryza sativa OS06G0344900 I
OS08G0511200 Oryza sativa OS08G0511200 I
OS09G0497900 Oryza sativa OS09G0497900 I
Pavir.Fa00294 Panicum virgatum Pavir.Fa00294 I
Pavir.Fa00438 Panicum virgatum Pavir.Fa00438 I
Pavir.Fb01938 Panicum virgatum Pavir.Fb01938 I
Pavir.J00978 Panicum virgatum Pavir.J00978 I
Pavir.J02772 Panicum virgatum Pavir.J02772 I
PDK_20s1323531g003 Phoenix dactylifera PDK_20s1323531g003 I
PK02366.1 Cannabis sativa PK02366.1 I
PK13860.1 Cannabis sativa PK13860.1 I
PK26741.1 Cannabis sativa PK26741.1 I
Pm005091 Prunus mume Pm005091 I
Pm011397 Prunus mume Pm011397 I
Pm015914 Prunus mume Pm015914 I
Pm022916 Prunus mume Pm022916 I
POPTR_0001s40680 Populus trichocarpa POPTR_0001s40680 I
POPTR_0002s00730 Populus trichocarpa POPTR_0002s00730 I
POPTR_0005s27720 Populus trichocarpa POPTR_0005s27720 I
POPTR_0006s29180 Populus trichocarpa POPTR_0006s29180 I
POPTR_0011s11600 Populus trichocarpa POPTR_0011s11600 I
POPTR_0018s03910 Populus trichocarpa POPTR_0018s03910 I
PRUPE_ppa007883mg Prunus persica PRUPE_ppa007883mg I
PRUPE_ppa025916mg Prunus persica PRUPE_ppa025916mg I
PRUPE_ppa026810mg Prunus persica PRUPE_ppa026810mg I
SapurV1A.0016s0340 Salix purpurea SapurV1A.0016s0340 I
SapurV1A.0207s0120 Salix purpurea SapurV1A.0207s0120 I
SapurV1A.0263s0310 Salix purpurea SapurV1A.0263s0310 I
SapurV1A.0266s0070 Salix purpurea SapurV1A.0266s0070 I
SapurV1A.1285s0100 Salix purpurea SapurV1A.1285s0100 I
SapurV1A.1325s0010 Salix purpurea SapurV1A.1325s0010 I
SapurV1A.1363s0020 Salix purpurea SapurV1A.1363s0020 I
SapurV1A.2059s0010 Salix purpurea SapurV1A.2059s0010 I
Sb02g028870 Sorghum bicolor Sb02g028870 I
Sb07g027650 Sorghum bicolor Sb07g027650 I
Sb08g006330 Sorghum bicolor Sb08g006330 I
Si007886m.g Setaria italica Si007886m.g I
Si015498m.g Setaria italica Si015498m.g I
Si030187m.g Setaria italica Si030187m.g I
Solyc07g062840.2 Solanum lycopersicum Solyc07g062840.2 I
TCM_014073 Theobroma cacao TCM_014073 I
TCM_018621 Theobroma cacao TCM_018621 I
TCM_031619 Theobroma cacao TCM_031619 I
TCM_034835 Theobroma cacao TCM_034835 I
TCM_036791 Theobroma cacao TCM_036791 I
Thhalv10004550m.g Eutrema salsugineum Thhalv10004550m.g I
Thhalv10013863m.g Eutrema salsugineum Thhalv10013863m.g I
Thhalv10014081m.g Eutrema salsugineum Thhalv10014081m.g I
Thhalv10019493m.g Eutrema salsugineum Thhalv10019493m.g I
Traes_5BL_657BF1497 Triticum aestivum Traes_5BL_657BF1497 I
Traes_7AL_74CC91D39 Triticum aestivum Traes_7AL_74CC91D39 I
TRIUR3_20591 Triticum urartu TRIUR3_20591 I
ANAC039 Vitis vinifera VIT_04s0008g02710 I
VIT_14s0108g01070 Vitis vinifera VIT_14s0108g01070 I
CUC3 Vitis vinifera VIT_18s0122g00800 I
VIT_19s0014g02200 Vitis vinifera VIT_19s0014g02200 I