CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Pavir.Fa00438
(
Panicum virgatum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Pavir.Fa00438
T298842_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC031
M07182_2.00
Arabidopsis thaliana
NTWDCKTGTNNHWYACGY
RCGTRWDNNACAMGHWAN
Dap-seq
OMalley et al.(2016)
CUC3_col_a
0.902
0.719
NAC031
M07183_2.00
Arabidopsis thaliana
CKTGTNNHDCACGYHA
TDRCGTGHDNNACAMG
Dap-seq
OMalley et al.(2016)
CUC3_colamp_a
0.902
0.719
NAC098
M07239_2.00
Arabidopsis thaliana
CKTGTNNNDYAMGYHA
TDRCKTRHNNNACAMG
Dap-seq
OMalley et al.(2016)
CUC2_colamp_a
0.900
0.746
NAC098
M07240_2.00
Arabidopsis thaliana
NNNTWNCKTGHNNHWCAMG
CKTGWDNNDCAMGNWANNN
Dap-seq
OMalley et al.(2016)
CUC2_col
0.900
0.746
e_gw1.288.15.1
M02381_2.00
Physcomitrella patens
NNNBAMKNHW
WDNMKTVNNN
PBM
Weirauch et al.(2014)
pTH8467
0.871
0.737
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Fa00438.1.p
NAC/NAM
86
212
PPGFRFHPTDEELVTFYLAAKVLNGACCGVDIAEVDLNRCEPWELPDAARMGEREWYFLSLRDRKYPTGMRTNRATAAGYWKATGKDREVLSAATGALLGMKKTLVFYKGRAPRGEKTKWVLHEYRL
Links
Other
NAC/NAM
family TFs
Other
Panicum virgatum
TFs
159 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Fa00294
Panicum virgatum
Pavir.Fa00294
I
0.972
Pavir.Fb01938
Panicum virgatum
Pavir.Fb01938
I
0.971
Si015498m.g
Setaria italica
Si015498m.g
I
0.969
Sb07g027650
Sorghum bicolor
Sb07g027650
I
0.969
GRMZM2G430522
Zea mays
GRMZM2G430522
I
0.969
OB08G27000
Oryza brachyantha
OB08G27000
I
0.964
GSMUA_Achr9G20090_001
Musa acuminata
GSMUA_Achr9G20090_001
I
0.954
POPTR_0002s00730
Populus trichocarpa
POPTR_0002s00730
I
0.953
SapurV1A.0016s0340
Salix purpurea
SapurV1A.0016s0340
I
0.951
gene31474-v1.0-hybrid
Fragaria vesca
gene31474-v1.0-hybrid
I
0.948
Gorai.009G186000
Gossypium raimondii
Gorai.009G186000
I
0.947
MLOC_13932
Hordeum vulgare
MLOC_13932
I
0.947
BGIOSGA026695
Oryza indica
BGIOSGA026695
I
0.946
ONIVA08G22710
Oryza nivara
ONIVA08G22710
I
0.946
Eucgr.F03588
Eucalyptus grandis
Eucgr.F03588
I
0.946
ORUFI08G22550
Oryza rufipogon
ORUFI08G22550
I
0.945
Ciclev10001403m.g
Citrus clementina
Ciclev10001403m.g
I
0.945
CUC3
Vitis vinifera
VIT_18s0122g00800
I
0.945
orange1.1g016283m.g
Citrus sinensis
orange1.1g016283m.g
I
0.945
OGLUM08G21360
Oryza glumaepatula
OGLUM08G21360
I
0.945
cassava21580.m1
Manihot esculenta
cassava21580.m1
I
0.945
POPTR_0005s27720
Populus trichocarpa
POPTR_0005s27720
I
0.945
ORGLA08G0177600
Oryza glaberrima
ORGLA08G0177600
I
0.945
OS08G0511200
Oryza sativa
OS08G0511200
I
0.945
SapurV1A.0266s0070
Salix purpurea
SapurV1A.0266s0070
I
0.945
Lus10013205.g
Linum usitatissimum
Lus10013205.g
I
0.945
Pm022916
Prunus mume
Pm022916
I
0.944
TCM_034835
Theobroma cacao
TCM_034835
I
0.943
30170.m014236
Ricinus communis
30170.m014236
I
0.943
OPUNC08G18240
Oryza punctata
OPUNC08G18240
I
0.942
Gorai.002G113300
Gossypium raimondii
Gorai.002G113300
I
0.941
mgf023466m
Mimulus guttatus
mgf023466m
I
0.939
PRUPE_ppa022238mg
Prunus persica
PRUPE_ppa022238mg
I
0.939
Aquca_015_00272
Aquilegia coerulea
Aquca_015_00272
I
0.939
Lus10030723.g
Linum usitatissimum
Lus10030723.g
I
0.939
cassava21054.m1
Manihot esculenta
cassava21054.m1
I
0.938
Cucsa.272370
Cucumis sativus
Cucsa.272370
I
0.937
Cla023834
Citrullus lanatus
Cla023834
I
0.937
Aquca_007_00948
Aquilegia coerulea
Aquca_007_00948
I
0.935
Bo6g120460
Brassica oleracea
Bo6g120460
I
0.927
PK13964.1
Cannabis sativa
PK13964.1
I
0.927
LPERR08G17020
Leersia perrieri
LPERR08G17020
I
0.927
Bra008259
Brassica rapa
Bra008259
I
0.927
Bra015750
Brassica rapa
Bra015750
I
0.927
MDP0000191344
Malus domestica
MDP0000191344
I
0.926
MDP0000167208
Malus domestica
MDP0000167208
I
0.926
evm.TU.supercontig_286.12
Carica papaya
evm.TU.supercontig_286.12
I
0.924
OLONG_023103
Oryza longistaminata
OLONG_023103
I
0.922
mgf018675m
Mimulus guttatus
mgf018675m
I
0.922
Thhalv10019493m.g
Eutrema salsugineum
Thhalv10019493m.g
I
0.920
Bo2g089890
Brassica oleracea
Bo2g089890
I
0.915
MDP0000135860
Malus domestica
MDP0000135860
I
0.913
LPERR06G12840
Leersia perrieri
LPERR06G12840
I
0.912
GRMZM2G139700
Zea mays
GRMZM2G139700
I
0.910
ORGLA06G0124600
Oryza glaberrima
ORGLA06G0124600
I
0.910
ORUFI06G14810
Oryza rufipogon
ORUFI06G14810
I
0.910
OGLUM06G14810
Oryza glumaepatula
OGLUM06G14810
I
0.910
OS06G0344900
Oryza sativa
OS06G0344900
I
0.910
OPUNC06G13130
Oryza punctata
OPUNC06G13130
I
0.910
OLONG_019251
Oryza longistaminata
OLONG_019251
I
0.910
OBART06G13940
Oryza barthii
OBART06G13940
I
0.910
OB06G22100
Oryza brachyantha
OB06G22100
I
0.910
ONIVA03G33370
Oryza nivara
ONIVA03G33370
I
0.910
BGIOSGA022861
Oryza indica
BGIOSGA022861
I
0.910
Bostr.20129s0079
Boechera stricta
Bostr.20129s0079
I
0.908
Carubv10022061m.g
Capsella rubella
Carubv10022061m.g
I
0.906
Cagra.0799s0114
Capsella grandiflora
Cagra.0799s0114
I
0.906
PRUPE_ppa026810mg
Prunus persica
PRUPE_ppa026810mg
I
0.905
Pavir.J00978
Panicum virgatum
Pavir.J00978
I
0.905
MDP0000310981
Malus domestica
MDP0000310981
I
0.905
cassava44869.m1
Manihot esculenta
cassava44869.m1
I
0.905
Pm011397
Prunus mume
Pm011397
I
0.905
Sb08g006330
Sorghum bicolor
Sb08g006330
I
0.905
Si007886m.g
Setaria italica
Si007886m.g
I
0.905
GRMZM2G393433
Zea mays
GRMZM2G393433
I
0.905
Ca_22370
Cicer arietinum
Ca_22370
I
0.903
OLONG_009674
Oryza longistaminata
OLONG_009674
I
0.902
OPUNC09G13640
Oryza punctata
OPUNC09G13640
I
0.902
ORUFI09G16430
Oryza rufipogon
ORUFI09G16430
I
0.902
OBART09G15220
Oryza barthii
OBART09G15220
I
0.902
LPERR09G11330
Leersia perrieri
LPERR09G11330
I
0.902
ORGLA09G0117400
Oryza glaberrima
ORGLA09G0117400
I
0.902
ONIVA09G15800
Oryza nivara
ONIVA09G15800
I
0.902
BGIOSGA029508
Oryza indica
BGIOSGA029508
I
0.902
Sb02g028870
Sorghum bicolor
Sb02g028870
I
0.902
OGLUM09G15820
Oryza glumaepatula
OGLUM09G15820
I
0.902
NAC031
Arabidopsis thaliana
AT1G76420
D
0.902
Pavir.J02772
Panicum virgatum
Pavir.J02772
I
0.902
OS09G0497900
Oryza sativa
OS09G0497900
I
0.902
OMERI07G04410
Oryza meridionalis
OMERI07G04410
I
0.902
Si030187m.g
Setaria italica
Si030187m.g
I
0.902
Gorai.013G171300
Gossypium raimondii
Gorai.013G171300
I
0.901
CUC3
Arabidopsis lyrata
fgenesh2_kg.2__1929__AT1G76420.1
I
0.901
Thhalv10013863m.g
Eutrema salsugineum
Thhalv10013863m.g
I
0.900
NAC098
Arabidopsis thaliana
AT5G53950
D
0.900
Bo9g113820
Brassica oleracea
Bo9g113820
I
0.900
Bostr.26833s0880
Boechera stricta
Bostr.26833s0880
I
0.900
Cagra.4622s0005
Capsella grandiflora
Cagra.4622s0005
I
0.900
Carubv10028330m.g
Capsella rubella
Carubv10028330m.g
I
0.900
CUC2
Arabidopsis lyrata
Al_scaffold_0008_1815
I
0.900
27950.m000105
Ricinus communis
27950.m000105
I
0.899
TCM_031619
Theobroma cacao
TCM_031619
I
0.899
evm.TU.supercontig_131.88
Carica papaya
evm.TU.supercontig_131.88
I
0.899
Gorai.002G067300
Gossypium raimondii
Gorai.002G067300
I
0.899
Lus10041924.g
Linum usitatissimum
Lus10041924.g
I
0.897
Lus10005537.g
Linum usitatissimum
Lus10005537.g
I
0.897
AMTR_s00058p00136280
Amborella trichopoda
AMTR_s00058p00136280
I
0.896
SapurV1A.2059s0010
Salix purpurea
SapurV1A.2059s0010
I
0.895
POPTR_0011s11600
Populus trichocarpa
POPTR_0011s11600
I
0.895
GSMUA_Achr10G22350_001
Musa acuminata
GSMUA_Achr10G22350_001
I
0.895
SapurV1A.1325s0010
Salix purpurea
SapurV1A.1325s0010
I
0.895
GLYMA09G37050
Glycine max
GLYMA09G37050
I
0.894
AMTR_s00022p00160350
Amborella trichopoda
AMTR_s00022p00160350
I
0.893
orange1.1g018950m.g
Citrus sinensis
orange1.1g018950m.g
I
0.891
Ciclev10012093m.g
Citrus clementina
Ciclev10012093m.g
I
0.891
GRMZM2G386163
Zea mays
GRMZM2G386163
I
0.890
VIT_19s0014g02200
Vitis vinifera
VIT_19s0014g02200
I
0.890
Bra022685
Brassica rapa
Bra022685
I
0.887
Ciclev10008619m.g
Citrus clementina
Ciclev10008619m.g
I
0.887
Bo2g043280
Brassica oleracea
Bo2g043280
I
0.887
orange1.1g047710m.g
Citrus sinensis
orange1.1g047710m.g
I
0.887
Cla023717
Citrullus lanatus
Cla023717
I
0.886
Cucsa.122890
Cucumis sativus
Cucsa.122890
I
0.886
LjSGA_071377.1
Lotus japonicus
LjSGA_071377.1
I
0.886
GLYMA06G35660
Glycine max
GLYMA06G35660
I
0.885
GLYMA12G26190
Glycine max
GLYMA12G26190
I
0.885
GLYMA18G49620
Glycine max
GLYMA18G49620
I
0.885
GLYMA13G05540
Glycine max
GLYMA13G05540
I
0.885
MLOC_65286
Hordeum vulgare
MLOC_65286
I
0.884
Traes_7AL_74CC91D39
Triticum aestivum
Traes_7AL_74CC91D39
I
0.884
F775_20638
Aegilops tauschii
F775_20638
I
0.884
VIT_14s0108g01070
Vitis vinifera
VIT_14s0108g01070
I
0.884
AMTR_s00010p00266320
Amborella trichopoda
AMTR_s00010p00266320
I
0.884
MDP0000198235
Malus domestica
MDP0000198235
I
0.883
Gorai.007G323900
Gossypium raimondii
Gorai.007G323900
I
0.883
chr3.CM0282.730.nc
Lotus japonicus
chr3.CM0282.730.nc
I
0.881
mgf017531m
Mimulus guttatus
mgf017531m
I
0.881
BRADI4G34157
Brachypodium distachyon
BRADI4G34157
I
0.881
SapurV1A.0207s0120
Salix purpurea
SapurV1A.0207s0120
I
0.880
Ca_22532
Cicer arietinum
Ca_22532
I
0.880
POPTR_0001s40680
Populus trichocarpa
POPTR_0001s40680
I
0.880
Solyc07g062840.2
Solanum lycopersicum
Solyc07g062840.2
I
0.879
TCM_018621
Theobroma cacao
TCM_018621
I
0.879
MTR_3g070030
Medicago truncatula
MTR_3g070030
I
0.878
GLYMA19G02850
Glycine max
GLYMA19G02850
I
0.878
Eucgr.I01958
Eucalyptus grandis
Eucgr.I01958
I
0.877
GLYMA13G34950
Glycine max
GLYMA13G34950
I
0.877
PGSC0003DMG400001338
Solanum tuberosum
PGSC0003DMG400001338
I
0.877
GLYMA12G35530
Glycine max
GLYMA12G35530
I
0.877
Solyc02g088180.2
Solanum lycopersicum
Solyc02g088180.2
I
0.877
MTR_2g078700
Medicago truncatula
MTR_2g078700
I
0.876
PRUPE_ppa007883mg
Prunus persica
PRUPE_ppa007883mg
I
0.875
Aquca_033_00035
Aquilegia coerulea
Aquca_033_00035
I
0.875
gene00971-v1.0-hybrid
Fragaria vesca
gene00971-v1.0-hybrid
I
0.874
MDP0000276765
Malus domestica
MDP0000276765
I
0.873
Gorai.007G079900
Gossypium raimondii
Gorai.007G079900
I
0.872
OB09G21720
Oryza brachyantha
OB09G21720
I
0.872
OB04G22290
Oryza brachyantha
OB04G22290
I
0.872
e_gw1.288.15.1
Physcomitrella patens
e_gw1.288.15.1
D
0.871