CUC3 (Arabidopsis lyrata)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 fgenesh2_kg.2__1929__AT1G76420.1 T292961_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC031
M07182_2.00 		Arabidopsis thaliana
NTWDCKTGTNNHWYACGY
RCGTRWDNNACAMGHWAN		 Dap-seq
OMalley et al.(2016)
CUC3_col_a 		0.972 0.991
NAC031
M07183_2.00 		Arabidopsis thaliana
CKTGTNNHDCACGYHA
TDRCGTGHDNNACAMG		 Dap-seq
OMalley et al.(2016)
CUC3_colamp_a 		0.972 0.991
NAC098
M07239_2.00 		Arabidopsis thaliana
CKTGTNNNDYAMGYHA
TDRCKTRHNNNACAMG		 Dap-seq
OMalley et al.(2016)
CUC2_colamp_a 		0.905 0.732
NAC098
M07240_2.00 		Arabidopsis thaliana
NNNTWNCKTGHNNHWCAMG
CKTGWDNNDCAMGNWANNN		 Dap-seq
OMalley et al.(2016)
CUC2_col 		0.905 0.732
NAC59
M11080_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANAC059_01 		0.893 0.723
NAC100
M02375_2.00 		Arabidopsis thaliana
NBAMKNHWNN
NNWDNMKTVN		 PBM
Weirauch et al.(2014)
pTH7239 		0.889 0.741
ANAC100
M02377_2.00 		Arabidopsis lyrata
DYACGYHANN
NNTDRCGTRH		 PBM
Weirauch et al.(2014)
pTH9234 		0.885 0.741
NAC92
M00979_2.00 		Arabidopsis thaliana
NNDYACGBHA
TDVCGTRHNN		 PBM
Lindemose et al.(2014)
ANAC092 		0.881 0.732
NAC92
M00730_2.00 		Arabidopsis thaliana
DYACGNHAN
NTDNCGTRH		 PBM
Chang et al.(2013)
pTH7335 		0.881 0.732
NAC92
M07234_2.00 		Arabidopsis thaliana
TWNCKTGHNNHDCAMGYWAY
RTWRCKTGHDNNDCAMGNWA		 Dap-seq
OMalley et al.(2016)
ANAC092_colamp_a 		0.881 0.732
NAC92
M07235_2.00 		Arabidopsis thaliana
WRCKTGTNNNDCAMG
CKTGHNNNACAMGYW		 Dap-seq
OMalley et al.(2016)
ANAC092_col_v3a 		0.881 0.732
NAC079
M02373_2.00 		Arabidopsis thaliana
TTGCGTRY
RYACGCAA		 PBM
Weirauch et al.(2014)
pTH7399 		0.878 0.732
NAC079
M07228_2.00 		Arabidopsis thaliana
CBWNHNNHACACGYWA
TWRCGTGTDNNDNWVG		 Dap-seq
OMalley et al.(2016)
ANAC079_colamp_a 		0.878 0.732
NAC079
M07229_2.00 		Arabidopsis thaliana
NTWNCKTVHNNHWCAMGYWAH
DTWRCKTGWDNNDBAMGNWAN		 Dap-seq
OMalley et al.(2016)
ANAC079_col 		0.878 0.732
ANAC080
M02376_2.00 		Arabidopsis lyrata
NBAMKNHWNN
NNWDNMKTVN		 PBM
Weirauch et al.(2014)
pTH9230 		0.876 0.723
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.2__1929__AT1G76420.1 NAC/NAM 23 149

Links

Other NAC/NAM family TFs
Other Arabidopsis lyrata TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC031 Arabidopsis thaliana AT1G76420 D 0.972
Cagra.0799s0114 Capsella grandiflora Cagra.0799s0114 I 0.966
Carubv10022061m.g Capsella rubella Carubv10022061m.g I 0.966
Bo6g120460 Brassica oleracea Bo6g120460 I 0.962
Bra008259 Brassica rapa Bra008259 I 0.962
Bra015750 Brassica rapa Bra015750 I 0.962
Bostr.20129s0079 Boechera stricta Bostr.20129s0079 I 0.962
Thhalv10019493m.g Eutrema salsugineum Thhalv10019493m.g I 0.959
Bo2g089890 Brassica oleracea Bo2g089890 I 0.956
mgf023466m Mimulus guttatus mgf023466m I 0.949
evm.TU.supercontig_286.12 Carica papaya evm.TU.supercontig_286.12 I 0.948
mgf018675m Mimulus guttatus mgf018675m I 0.946
Cla023834 Citrullus lanatus Cla023834 I 0.938
Cucsa.272370 Cucumis sativus Cucsa.272370 I 0.938
Ciclev10001403m.g Citrus clementina Ciclev10001403m.g I 0.938
orange1.1g016283m.g Citrus sinensis orange1.1g016283m.g I 0.938
POPTR_0005s27720 Populus trichocarpa POPTR_0005s27720 I 0.937
TCM_034835 Theobroma cacao TCM_034835 I 0.937
CUC3 Vitis vinifera VIT_18s0122g00800 I 0.937
30170.m014236 Ricinus communis 30170.m014236 I 0.937
cassava21580.m1 Manihot esculenta cassava21580.m1 I 0.937
SapurV1A.0266s0070 Salix purpurea SapurV1A.0266s0070 I 0.937
cassava21054.m1 Manihot esculenta cassava21054.m1 I 0.936
Gorai.009G186000 Gossypium raimondii Gorai.009G186000 I 0.936
Lus10030723.g Linum usitatissimum Lus10030723.g I 0.936
Aquca_007_00948 Aquilegia coerulea Aquca_007_00948 I 0.935
POPTR_0002s00730 Populus trichocarpa POPTR_0002s00730 I 0.934
Eucgr.F03588 Eucalyptus grandis Eucgr.F03588 I 0.933
SapurV1A.0016s0340 Salix purpurea SapurV1A.0016s0340 I 0.932
gene31474-v1.0-hybrid Fragaria vesca gene31474-v1.0-hybrid I 0.930
Aquca_015_00272 Aquilegia coerulea Aquca_015_00272 I 0.929
GSMUA_Achr9G20090_001 Musa acuminata GSMUA_Achr9G20090_001 I 0.926
Gorai.002G113300 Gossypium raimondii Gorai.002G113300 I 0.924
Lus10013205.g Linum usitatissimum Lus10013205.g I 0.924
Pm022916 Prunus mume Pm022916 I 0.923
LPERR06G12840 Leersia perrieri LPERR06G12840 I 0.922
PRUPE_ppa022238mg Prunus persica PRUPE_ppa022238mg I 0.922
BGIOSGA022861 Oryza indica BGIOSGA022861 I 0.921
OB06G22100 Oryza brachyantha OB06G22100 I 0.921
OBART06G13940 Oryza barthii OBART06G13940 I 0.921
OGLUM06G14810 Oryza glumaepatula OGLUM06G14810 I 0.921
OLONG_019251 Oryza longistaminata OLONG_019251 I 0.921
ONIVA03G33370 Oryza nivara ONIVA03G33370 I 0.921
OPUNC06G13130 Oryza punctata OPUNC06G13130 I 0.921
ORGLA06G0124600 Oryza glaberrima ORGLA06G0124600 I 0.921
ORUFI06G14810 Oryza rufipogon ORUFI06G14810 I 0.921
OS06G0344900 Oryza sativa OS06G0344900 I 0.921
BRADI4G34157 Brachypodium distachyon BRADI4G34157 I 0.920
AMTR_s00058p00136280 Amborella trichopoda AMTR_s00058p00136280 I 0.918
Traes_5BL_657BF1497 Triticum aestivum Traes_5BL_657BF1497 I 0.917
PK13964.1 Cannabis sativa PK13964.1 I 0.917
F775_52293 Aegilops tauschii F775_52293 I 0.916
MLOC_68185 Hordeum vulgare MLOC_68185 I 0.916
TRIUR3_20591 Triticum urartu TRIUR3_20591 I 0.916
OB08G27000 Oryza brachyantha OB08G27000 I 0.915
MDP0000135860 Malus domestica MDP0000135860 I 0.915
VIT_19s0014g02200 Vitis vinifera VIT_19s0014g02200 I 0.914
TCM_031619 Theobroma cacao TCM_031619 I 0.913
27950.m000105 Ricinus communis 27950.m000105 I 0.913
mgf017531m Mimulus guttatus mgf017531m I 0.913
evm.TU.supercontig_131.88 Carica papaya evm.TU.supercontig_131.88 I 0.913
Gorai.002G067300 Gossypium raimondii Gorai.002G067300 I 0.913
Lus10005537.g Linum usitatissimum Lus10005537.g I 0.913
Lus10041924.g Linum usitatissimum Lus10041924.g I 0.913
PDK_20s1323531g003 Phoenix dactylifera PDK_20s1323531g003 I 0.913
MDP0000167208 Malus domestica MDP0000167208 I 0.912
MDP0000191344 Malus domestica MDP0000191344 I 0.912
GLYMA06G35660 Glycine max GLYMA06G35660 I 0.911
GLYMA12G26190 Glycine max GLYMA12G26190 I 0.911
Cla023717 Citrullus lanatus Cla023717 I 0.911
LjSGA_071377.1 Lotus japonicus LjSGA_071377.1 I 0.911
BGIOSGA029508 Oryza indica BGIOSGA029508 I 0.910
GRMZM2G139700 Zea mays GRMZM2G139700 I 0.910
LPERR09G11330 Leersia perrieri LPERR09G11330 I 0.910
OBART09G15220 Oryza barthii OBART09G15220 I 0.910
OGLUM09G15820 Oryza glumaepatula OGLUM09G15820 I 0.910
OLONG_009674 Oryza longistaminata OLONG_009674 I 0.910
OMERI07G04410 Oryza meridionalis OMERI07G04410 I 0.910
ONIVA09G15800 Oryza nivara ONIVA09G15800 I 0.910
OPUNC09G13640 Oryza punctata OPUNC09G13640 I 0.910
ORGLA09G0117400 Oryza glaberrima ORGLA09G0117400 I 0.910
ORUFI09G16430 Oryza rufipogon ORUFI09G16430 I 0.910
OS09G0497900 Oryza sativa OS09G0497900 I 0.910
Sb02g028870 Sorghum bicolor Sb02g028870 I 0.910
Si030187m.g Setaria italica Si030187m.g I 0.910
Cucsa.122890 Cucumis sativus Cucsa.122890 I 0.910
Pavir.J02772 Panicum virgatum Pavir.J02772 I 0.910
GRMZM2G430522 Zea mays GRMZM2G430522 I 0.909
PRUPE_ppa026810mg Prunus persica PRUPE_ppa026810mg I 0.909
Sb07g027650 Sorghum bicolor Sb07g027650 I 0.909
Pm011397 Prunus mume Pm011397 I 0.909
cassava44869.m1 Manihot esculenta cassava44869.m1 I 0.909
MDP0000310981 Malus domestica MDP0000310981 I 0.909
GSMUA_Achr10G22350_001 Musa acuminata GSMUA_Achr10G22350_001 I 0.907
Ca_22532 Cicer arietinum Ca_22532 I 0.906
Gorai.013G171300 Gossypium raimondii Gorai.013G171300 I 0.906
CUC2 Arabidopsis lyrata Al_scaffold_0008_1815 I 0.905
NAC098 Arabidopsis thaliana AT5G53950 D 0.905
Bo9g113820 Brassica oleracea Bo9g113820 I 0.905
Bostr.26833s0880 Boechera stricta Bostr.26833s0880 I 0.905
Cagra.4622s0005 Capsella grandiflora Cagra.4622s0005 I 0.905
Carubv10028330m.g Capsella rubella Carubv10028330m.g I 0.905
Thhalv10013863m.g Eutrema salsugineum Thhalv10013863m.g I 0.905
GLYMA12G35530 Glycine max GLYMA12G35530 I 0.904
GLYMA13G34950 Glycine max GLYMA13G34950 I 0.904
OGLUM08G21360 Oryza glumaepatula OGLUM08G21360 I 0.904
ORGLA08G0177600 Oryza glaberrima ORGLA08G0177600 I 0.904
ORUFI08G22550 Oryza rufipogon ORUFI08G22550 I 0.904
OS08G0511200 Oryza sativa OS08G0511200 I 0.904
POPTR_0011s11600 Populus trichocarpa POPTR_0011s11600 I 0.904
Si015498m.g Setaria italica Si015498m.g I 0.904
Ciclev10012093m.g Citrus clementina Ciclev10012093m.g I 0.904
Gorai.007G079900 Gossypium raimondii Gorai.007G079900 I 0.904
orange1.1g018950m.g Citrus sinensis orange1.1g018950m.g I 0.904
SapurV1A.1325s0010 Salix purpurea SapurV1A.1325s0010 I 0.904
SapurV1A.2059s0010 Salix purpurea SapurV1A.2059s0010 I 0.904
MTR_2g078700 Medicago truncatula MTR_2g078700 I 0.903
Sb08g006330 Sorghum bicolor Sb08g006330 I 0.903
GRMZM2G008374 Zea mays GRMZM2G008374 I 0.902
GRMZM2G393433 Zea mays GRMZM2G393433 I 0.902
OPUNC08G18240 Oryza punctata OPUNC08G18240 I 0.902
Si007886m.g Setaria italica Si007886m.g I 0.902
Aquca_033_00035 Aquilegia coerulea Aquca_033_00035 I 0.902
Pavir.J00978 Panicum virgatum Pavir.J00978 I 0.902
Ca_22370 Cicer arietinum Ca_22370 I 0.901
gene00971-v1.0-hybrid Fragaria vesca gene00971-v1.0-hybrid I 0.901
Pavir.Fa00294 Panicum virgatum Pavir.Fa00294 I 0.901
Pavir.Fa00438 Panicum virgatum Pavir.Fa00438 I 0.901
chr3.CM0282.730.nc Lotus japonicus chr3.CM0282.730.nc I 0.901
POPTR_0001s40680 Populus trichocarpa POPTR_0001s40680 I 0.900
Ciclev10008619m.g Citrus clementina Ciclev10008619m.g I 0.900
orange1.1g047710m.g Citrus sinensis orange1.1g047710m.g I 0.900
Pavir.Fb01938 Panicum virgatum Pavir.Fb01938 I 0.900
SapurV1A.0207s0120 Salix purpurea SapurV1A.0207s0120 I 0.900
GRMZM2G386163 Zea mays GRMZM2G386163 I 0.899
TCM_018621 Theobroma cacao TCM_018621 I 0.899
BGIOSGA026695 Oryza indica BGIOSGA026695 I 0.898
ONIVA08G22710 Oryza nivara ONIVA08G22710 I 0.898
VIT_14s0108g01070 Vitis vinifera VIT_14s0108g01070 I 0.898
AMTR_s00022p00160350 Amborella trichopoda AMTR_s00022p00160350 I 0.896
GLYMA09G37050 Glycine max GLYMA09G37050 I 0.896
Bo2g043280 Brassica oleracea Bo2g043280 I 0.895
Bra022685 Brassica rapa Bra022685 I 0.895
MLOC_13932 Hordeum vulgare MLOC_13932 I 0.895
GLYMA18G49620 Glycine max GLYMA18G49620 I 0.894
Cucsa.338700 Cucumis sativus Cucsa.338700 I 0.894
Eucgr.I01958 Eucalyptus grandis Eucgr.I01958 I 0.894
NAC59 Arabidopsis thaliana AT3G29035 D 0.893
Cla017258 Citrullus lanatus Cla017258 I 0.893
Gorai.007G323900 Gossypium raimondii Gorai.007G323900 I 0.892
PK23488.1 Cannabis sativa PK23488.1 I 0.892
LPERR08G17020 Leersia perrieri LPERR08G17020 I 0.891
Thhalv10004550m.g Eutrema salsugineum Thhalv10004550m.g I 0.891
MTR_3g070030 Medicago truncatula MTR_3g070030 I 0.890
NAC100 Arabidopsis thaliana AT5G61430 D 0.889
Bo00578s090 Brassica oleracea Bo00578s090 I 0.889
Bo6g062160 Brassica oleracea Bo6g062160 I 0.889
Bra025658 Brassica rapa Bra025658 I 0.889
Solyc07g062840.2 Solanum lycopersicum Solyc07g062840.2 I 0.889
cassava361.valid.m1 Manihot esculenta cassava361.valid.m1 I 0.889
Bra028435 Brassica rapa Bra028435 I 0.888
ATNAC3 Arabidopsis lyrata fgenesh2_kg.5__665__AT3G29035.1 I 0.888
PRUPE_ppa007883mg Prunus persica PRUPE_ppa007883mg I 0.888
mgf003818m Mimulus guttatus mgf003818m I 0.888
Aquca_002_00662 Aquilegia coerulea Aquca_002_00662 I 0.888
Thhalv10027874m.g Eutrema salsugineum Thhalv10027874m.g I 0.888
PK26741.1 Cannabis sativa PK26741.1 I 0.888
28649.m000212 Ricinus communis 28649.m000212 I 0.887
chr4.CM0087.800.nd Lotus japonicus chr4.CM0087.800.nd I 0.886
Bo7g098620 Brassica oleracea Bo7g098620 I 0.885
Bra012960 Brassica rapa Bra012960 I 0.885
Bra029313 Brassica rapa Bra029313 I 0.885
ANAC100 Arabidopsis lyrata fgenesh2_kg.8__2118__AT5G61430.1 D 0.885
Pm015914 Prunus mume Pm015914 I 0.885
Cagra.0542s0037 Capsella grandiflora Cagra.0542s0037 I 0.885
Carubv10026752m.g Capsella rubella Carubv10026752m.g I 0.885
MDP0000276765 Malus domestica MDP0000276765 I 0.885
GLYMA19G02850 Glycine max GLYMA19G02850 I 0.884
GLYMA04G33270 Glycine max GLYMA04G33270 I 0.883
GLYMA13G05540 Glycine max GLYMA13G05540 I 0.883
cassava1757.valid.m1 Manihot esculenta cassava1757.valid.m1 I 0.883
Aquca_018_00116 Aquilegia coerulea Aquca_018_00116 I 0.883
gene04424-v1.0-hybrid Fragaria vesca gene04424-v1.0-hybrid I 0.883
Bostr.26833s0095 Boechera stricta Bostr.26833s0095 I 0.882
AMTR_s00010p00266320 Amborella trichopoda AMTR_s00010p00266320 I 0.881
NAC92 Arabidopsis thaliana AT5G39610 D 0.881
Bra028685 Brassica rapa Bra028685 I 0.881
ATNAC2 Arabidopsis lyrata fgenesh2_kg.7__3461__AT5G39610.1 I 0.881
cassava1758.valid.m1 Manihot esculenta cassava1758.valid.m1 I 0.881
Bostr.0556s0555 Boechera stricta Bostr.0556s0555 I 0.881
Bostr.10058s0039 Boechera stricta Bostr.10058s0039 I 0.881
Thhalv10004583m.g Eutrema salsugineum Thhalv10004583m.g I 0.881
Bo2g008760 Brassica oleracea Bo2g008760 I 0.880
PGSC0003DMG400009920 Solanum tuberosum PGSC0003DMG400009920 I 0.880
Eucgr.B00529 Eucalyptus grandis Eucgr.B00529 I 0.880
Gorai.007G038100 Gossypium raimondii Gorai.007G038100 I 0.880
F775_20638 Aegilops tauschii F775_20638 I 0.879
MLOC_65286 Hordeum vulgare MLOC_65286 I 0.879
Traes_7AL_74CC91D39 Triticum aestivum Traes_7AL_74CC91D39 I 0.879
NAC079 Arabidopsis thaliana AT5G07680 D 0.878
Bra009246 Brassica rapa Bra009246 I 0.878
PGSC0003DMG400001338 Solanum tuberosum PGSC0003DMG400001338 I 0.878
Solyc02g088180.2 Solanum lycopersicum Solyc02g088180.2 I 0.878
Bostr.13129s0198 Boechera stricta Bostr.13129s0198 I 0.878
Cagra.2925s0018 Capsella grandiflora Cagra.2925s0018 I 0.878
Carubv10001372m.g Capsella rubella Carubv10001372m.g I 0.878
Thhalv10014081m.g Eutrema salsugineum Thhalv10014081m.g I 0.878
GLYMA05G00930 Glycine max GLYMA05G00930 I 0.877
Bo2g161570 Brassica oleracea Bo2g161570 I 0.876
ANAC080 Arabidopsis lyrata fgenesh2_kg.6__736__AT5G07680.1 D 0.876
cassava41252.m1 Manihot esculenta cassava41252.m1 I 0.876
mgf023988m Mimulus guttatus mgf023988m I 0.876
evm.TU.supercontig_111.22 Carica papaya evm.TU.supercontig_111.22 I 0.876
Gorai.008G194400 Gossypium raimondii Gorai.008G194400 I 0.876
Bra003023 Brassica rapa Bra003023 I 0.875
GLYMA06G21020 Glycine max GLYMA06G21020 I 0.875
GLYMA17G10970 Glycine max GLYMA17G10970 I 0.875
GSMUA_Achr7G19680_001 Musa acuminata GSMUA_Achr7G19680_001 I 0.875
Bo9g008770 Brassica oleracea Bo9g008770 I 0.874
Bra036223 Brassica rapa Bra036223 I 0.874
GSMUA_Achr10G26180_001 Musa acuminata GSMUA_Achr10G26180_001 I 0.874
Cla018878 Citrullus lanatus Cla018878 I 0.874
estExt_gwp_gw1.C_460173 Physcomitrella patens estExt_gwp_gw1.C_460173 I 0.874
Carubv10017737m.g Capsella rubella Carubv10017737m.g I 0.874
GSMUA_Achr8G24680_001 Musa acuminata GSMUA_Achr8G24680_001 I 0.873
TCM_014073 Theobroma cacao TCM_014073 I 0.873
mgf025158m Mimulus guttatus mgf025158m I 0.873
Pm024887 Prunus mume Pm024887 I 0.872
MDP0000198235 Malus domestica MDP0000198235 I 0.872
Bo7g087220 Brassica oleracea Bo7g087220 I 0.871
GLYMA06G08440 Glycine max GLYMA06G08440 I 0.871