Carubv10014328m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10014328m.g T286339_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.909 1.000
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.909 1.000
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.909 1.000
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.909 0.978
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.909 0.978
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.901 0.957
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.891 0.935
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.891 0.935
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.891 0.935
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.818 0.891
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.795 0.870
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.795 0.870
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.795 0.870
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.717
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.674
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.674
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.674
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10014328m Myb 46 91

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA035743 Oryza indica BGIOSGA035743 N
BRADI4G09180 Brachypodium distachyon BRADI4G09180 N
BRADI4G09190 Brachypodium distachyon BRADI4G09190 N
F775_08284 Aegilops tauschii F775_08284 N
F775_08285 Aegilops tauschii F775_08285 N
GRMZM2G073823 Zea mays GRMZM2G073823 N
LPERR11G20420 Leersia perrieri LPERR11G20420 N
MLOC_7746 Hordeum vulgare MLOC_7746 N
OB11G28100 Oryza brachyantha OB11G28100 N
OBART11G23680 Oryza barthii OBART11G23680 N
ONIVA11G23200 Oryza nivara ONIVA11G23200 N
ORGLA11G0190400 Oryza glaberrima ORGLA11G0190400 N
ORUFI11G25560 Oryza rufipogon ORUFI11G25560 N
OS11G0705900 Oryza sativa OS11G0705900 N
Pavir.J31658 Panicum virgatum Pavir.J31658 N
Pavir.J39141 Panicum virgatum Pavir.J39141 N
Sb05g027785 Sorghum bicolor Sb05g027785 N
Si026116m.g Setaria italica Si026116m.g N
Traes_4AL_977AF4963 Triticum aestivum Traes_4AL_977AF4963 N
Traes_4AL_B2CACD56E Triticum aestivum Traes_4AL_B2CACD56E N
Traes_4AL_E769BB5A6 Triticum aestivum Traes_4AL_E769BB5A6 N
Traes_4BS_2EA81743E1 Triticum aestivum Traes_4BS_2EA81743E1 N
Traes_4BS_344A932261 Triticum aestivum Traes_4BS_344A932261 N
Traes_4DS_050789E2A Triticum aestivum Traes_4DS_050789E2A N
Traes_4DS_A5CD70F30 Triticum aestivum Traes_4DS_A5CD70F30 N
Traes_4DS_C7C37A73D Triticum aestivum Traes_4DS_C7C37A73D N
TRIUR3_21533 Triticum urartu TRIUR3_21533 N