CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J31658
(
Panicum virgatum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pavir.J31658
T203084_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J31658.1.p
GRAS
244
617
LQALLLRCAQAVATDDRGTAHDLLAQIRRHASPTGDAAQRLAHCFAEGLEARLAGTGSRLYHSLMLRRTSAVHFLRAYQLFMAACCCKKVAFAFSNKTISDAVKARRRLHIVDYGLGYGFQWPGLLRGLAARDGGPPEVRITGIDLPQPGFRPAYQIQETGRRLSDCAREFGVPFMFRGIAAKRETVSPEDLDIDRAEVLVVSSLCHFRHLMDESIVLGRPSPRDEVLGNIGRMQPDVFIHGVMNGGYGTTYFPTRFREALFHYSAQFDLLDATVPRDSQERMLVERDIFGRAALNVIACEGADRVERPETYKQWQARNQRAGLRQLPLKPEVAKVVLDKVRDNYHKDFIVDEDQAWLLHRWKGRVLYGLSTWV
Links
Other
GRAS
family TFs
Other
Panicum virgatum
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J39141
Panicum virgatum
Pavir.J39141
N
0.876
Si026116m.g
Setaria italica
Si026116m.g
N
0.854
Sb05g027785
Sorghum bicolor
Sb05g027785
N
0.822
Traes_4AL_977AF4963
Triticum aestivum
Traes_4AL_977AF4963
N
0.814
GRMZM2G073823
Zea mays
GRMZM2G073823
N
0.805
LPERR11G20420
Leersia perrieri
LPERR11G20420
N
0.770
BGIOSGA035743
Oryza indica
BGIOSGA035743
N
0.765
OBART11G23680
Oryza barthii
OBART11G23680
N
0.765
OGLUM11G22840
Oryza glumaepatula
OGLUM11G22840
N
0.765
ONIVA11G23200
Oryza nivara
ONIVA11G23200
N
0.765
ORGLA11G0190400
Oryza glaberrima
ORGLA11G0190400
N
0.765
OS11G0705900
Oryza sativa
OS11G0705900
N
0.765
ORUFI11G25560
Oryza rufipogon
ORUFI11G25560
N
0.762
Traes_4DS_C7C37A73D
Triticum aestivum
Traes_4DS_C7C37A73D
N
0.759
OB11G28100
Oryza brachyantha
OB11G28100
N
0.757
Traes_4BS_2EA81743E1
Triticum aestivum
Traes_4BS_2EA81743E1
N
0.754
F775_08285
Aegilops tauschii
F775_08285
N
0.746
BRADI4G09180
Brachypodium distachyon
BRADI4G09180
N
0.741
F775_08284
Aegilops tauschii
F775_08284
N
0.741
Traes_4BS_344A932261
Triticum aestivum
Traes_4BS_344A932261
N
0.741
Traes_4DS_A5CD70F30
Triticum aestivum
Traes_4DS_A5CD70F30
N
0.741
TRIUR3_21533
Triticum urartu
TRIUR3_21533
N
0.741
BRADI4G09190
Brachypodium distachyon
BRADI4G09190
N
0.730
Traes_4DS_050789E2A
Triticum aestivum
Traes_4DS_050789E2A
N
0.725
BRADI2G52227
Brachypodium distachyon
BRADI2G52227
N
0.700