PK01704.1 (Cannabis sativa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 PK01704.1 T290339_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CDC5
M02698_2.00 		Arabidopsis thaliana
NVCGCTGAGBN
NVCTCAGCGBN		 SELEX
Mathelier et al.(2014)
MA0579.1 		0.909 0.989
CDC5
M11037_2.00 		Arabidopsis thaliana
NVCGCTGAGBN
NVCTCAGCGBN		 Transfac
Matys et al.(2006)
P$CDC5_01 		0.909 0.989
CDC5L
M11049_2.00 		Homo sapiens
GWKTTAAYRTAD
HTAYRTTAAMWC		 Transfac
Matys et al.(2006)
V$CDC5_01 		0.814 0.880
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK01704.1 Myb 37 83
PK01704.1 Myb 89 133

Links

Other Myb/SANT family TFs
Other Cannabis sativa TFs

574 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28657.m000391 Ricinus communis 28657.m000391 N
AMTR_s00061p00067260 Amborella trichopoda AMTR_s00061p00067260 N
AMTR_s00089p00097770 Amborella trichopoda AMTR_s00089p00097770 I
Aquca_093_00004 Aquilegia coerulea Aquca_093_00004 N
cassava30583.valid.m1 Manihot esculenta cassava30583.valid.m1 N
Ca_20521 Cicer arietinum Ca_20521 N
chr3.CM0047.510.nc Lotus japonicus chr3.CM0047.510.nc N
Ciclev10008919m.g Citrus clementina Ciclev10008919m.g N
evm.TU.supercontig_12.68 Carica papaya evm.TU.supercontig_12.68 I
gene01438-v1.0-hybrid Fragaria vesca gene01438-v1.0-hybrid N
GLYMA04G12530 Glycine max GLYMA04G12530 N
Gorai.013G147900 Gossypium raimondii Gorai.013G147900 N
MDP0000167232 Malus domestica MDP0000167232 N
MDP0000257366 Malus domestica MDP0000257366 I
mgf009259m Mimulus guttatus mgf009259m N
orange1.1g020460m.g Citrus sinensis orange1.1g020460m.g N
PK06884.1 Cannabis sativa PK06884.1 N
Pm000293 Prunus mume Pm000293 N
POPTR_0011s17180 Populus trichocarpa POPTR_0011s17180 N
PRUPE_ppa008470mg Prunus persica PRUPE_ppa008470mg N
SapurV1A.0338s0260 Salix purpurea SapurV1A.0338s0260 I
TCM_030511 Theobroma cacao TCM_030511 I
VIT_19s0015g01770 Vitis vinifera VIT_19s0015g01770 N