CBN06713 (Caenorhabditis brenneri)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CBN06713 T301707_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-122
M00696_2.00 		Caenorhabditis elegans
NDTGGAGTVN
NBACTCCAHN		 PBM
Narasimhan et al.(2015)
pTH9326 		0.963 0.686
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN06713 Nuclear receptor 5 77

Links

Other Nuclear receptor family TFs
Other Caenorhabditis brenneri TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29889.m003394 Ricinus communis 29889.m003394 N
Aquca_029_00055 Aquilegia coerulea Aquca_029_00055 N
AT3G17450 Arabidopsis thaliana AT3G17450 N
Bostr.19424s0919 Boechera stricta Bostr.19424s0919 N
Cagra.4396s0051 Capsella grandiflora Cagra.4396s0051 N
Carubv10013083m.g Capsella rubella Carubv10013083m.g N
cassava36089.valid.m1 Manihot esculenta cassava36089.valid.m1 N
Ciclev10024195m.g Citrus clementina Ciclev10024195m.g N
Cucsa.252180 Cucumis sativus Cucsa.252180 N
Eucgr.B02527 Eucalyptus grandis Eucgr.B02527 N
evm.TU.supercontig_519.2 Carica papaya evm.TU.supercontig_519.2 N
gene22812-v1.0-hybrid Fragaria vesca gene22812-v1.0-hybrid N
GLYMA09G09291 Glycine max GLYMA09G09291 N
GLYMA15G21351 Glycine max GLYMA15G21351 N
Gorai.008G135400 Gossypium raimondii Gorai.008G135400 N
GSMUA_Achr3G12820_001 Musa acuminata GSMUA_Achr3G12820_001 N
LjT35D18.120.nc Lotus japonicus LjT35D18.120.nc N
MDP0000133479 Malus domestica MDP0000133479 N
MDP0000314867 Malus domestica MDP0000314867 N
orange1.1g044693m.g Citrus sinensis orange1.1g044693m.g N
PK21594.1 Cannabis sativa PK21594.1 N
Pm008491 Prunus mume Pm008491 N
POPTR_0002s18950 Populus trichocarpa POPTR_0002s18950 N
POPTR_0014s10940 Populus trichocarpa POPTR_0014s10940 N
PRUPE_ppa001126mg Prunus persica PRUPE_ppa001126mg N
SapurV1A.0014s0420 Salix purpurea SapurV1A.0014s0420 N
SapurV1A.0294s0300 Salix purpurea SapurV1A.0294s0300 N
TCM_004927 Theobroma cacao TCM_004927 N
TCM_021492 Theobroma cacao TCM_021492 N
Thhalv10020031m.g Eutrema salsugineum Thhalv10020031m.g N
VIT_05s0020g00790 Vitis vinifera VIT_05s0020g00790 N