CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0002s18950
(
Populus trichocarpa
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02892 (zf-BED)
IPR003656
POPTR_0002s18950
T027354_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0002s18950.1
BED ZF
15
63
DPGWEHGIAQDERKKKVKCNYCGKIVSGGIFRLKQHLARMSGEVTHCGK
POPTR_0002s18950.1
BED ZF
139
186
DPGWEHCIAQDEKKKRVKCNYCERIISGGINRFKQHLARIPGEVAYCD
POPTR_0002s18950.2
BED ZF
11
60
DPGWEHGIAQDERKKKVKCNYCGKIVSGGIFRLKQHLARMSGEVTHCGKV
POPTR_0002s18950.2
BED ZF
135
182
DPGWEHCIAQDEKKKRVKCNYCERIISGGINRFKQHLARIPGEVAYCD
Links
Other
BED ZF
family TFs
Other
Populus trichocarpa
TFs
32 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0014s0420
Salix purpurea
SapurV1A.0014s0420
N
0.976
Ciclev10024195m.g
Citrus clementina
Ciclev10024195m.g
N
0.964
POPTR_0014s10940
Populus trichocarpa
POPTR_0014s10940
N
0.964
orange1.1g044693m.g
Citrus sinensis
orange1.1g044693m.g
N
0.964
SapurV1A.0294s0300
Salix purpurea
SapurV1A.0294s0300
N
0.964
TCM_004927
Theobroma cacao
TCM_004927
N
0.952
cassava36089.valid.m1
Manihot esculenta
cassava36089.valid.m1
N
0.940
Eucgr.B02527
Eucalyptus grandis
Eucgr.B02527
N
0.929
Gorai.008G135400
Gossypium raimondii
Gorai.008G135400
N
0.917
evm.TU.supercontig_519.2
Carica papaya
evm.TU.supercontig_519.2
N
0.917
VIT_05s0020g00790
Vitis vinifera
VIT_05s0020g00790
N
0.869
Cagra.4396s0051
Capsella grandiflora
Cagra.4396s0051
N
0.845
Carubv10013083m.g
Capsella rubella
Carubv10013083m.g
N
0.845
Bostr.19424s0919
Boechera stricta
Bostr.19424s0919
N
0.845
Thhalv10020031m.g
Eutrema salsugineum
Thhalv10020031m.g
N
0.845
Aquca_029_00055
Aquilegia coerulea
Aquca_029_00055
N
0.845
GSMUA_Achr3G12820_001
Musa acuminata
GSMUA_Achr3G12820_001
N
0.845
AT3G17450
Arabidopsis thaliana
AT3G17450
N
0.845
GLYMA09G09291
Glycine max
GLYMA09G09291
N
0.845
LjT35D18.120.nc
Lotus japonicus
LjT35D18.120.nc
N
0.833
GLYMA15G21351
Glycine max
GLYMA15G21351
N
0.833
MDP0000314867
Malus domestica
MDP0000314867
N
0.821
PK21594.1
Cannabis sativa
PK21594.1
N
0.821
MDP0000133479
Malus domestica
MDP0000133479
N
0.821
29889.m003394
Ricinus communis
29889.m003394
N
0.821
PRUPE_ppa001126mg
Prunus persica
PRUPE_ppa001126mg
N
0.821
Pm008491
Prunus mume
Pm008491
N
0.821
Bo00763s120
Brassica oleracea
Bo00763s120
N
0.815
TCM_021492
Theobroma cacao
TCM_021492
N
0.810
Cucsa.252180
Cucumis sativus
Cucsa.252180
N
0.810
gene22812-v1.0-hybrid
Fragaria vesca
gene22812-v1.0-hybrid
N
0.798