CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSCING00000002352 *(Ciona intestinalis)* Nuclear receptor
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00105 (zf-C4)	IPR001628	ENSCING00000002352	T302683_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Pparg M05884_2.00	Mus musculus	HWNTRGGKYANB	VNTRMCCYANWD	SMiLE-seq Isakova et al.(2017) PPARg	0.908	0.629
PPARG M02707_2.00	Homo sapiens	STRGGTCANNDTGACCYANW	WNTRGGTCAHNNTGACCYAS	SELEX Mathelier et al.(2014) MA0066.1	0.908	0.629
PPARG M09278_2.00	Homo sapiens	VWSKRGGKSARAGGKSA	TSMCCTYTSMCCYMSWB	Misc Kulakovskiy et al.(2013) PPARG_HUMAN.H11MO.0.A	0.908	0.629
Pparg M09299_2.00	Mus musculus	HWBTRGGBSARAGGKNA	TNMCCTYTSVCCYAVWD	Misc Kulakovskiy et al.(2013) PPARG_MOUSE.H11MO.0.A	0.908	0.629
Pparg M09612_2.00	Mus musculus	TRGGNCARAGGKCA	TGMCCTYTGNCCYA	Misc Heinz et al.(2010) 3T3L1-Pparg_GSE13511	0.908	0.629
PPARG M11138_2.00	Homo sapiens	NNDRRGGTCAAAGGTCAHVND	HNBDTGACCTTTGACCYYHNN	Transfac Matys et al.(2006) V$PPARG_01	0.908	0.629
PPARG M11139_2.00	Homo sapiens	AWBTRGGTCACNDTGACCTASTT	AASTAGGTCAHNGTGACCYAVWT	Transfac Matys et al.(2006) V$PPARG_02	0.908	0.629
PPARG M11140_2.00	Homo sapiens	WWBHRGGNYAAAGKTCA	TGAMCTTTRNCCYDVWW	Transfac Matys et al.(2006) V$PPARG_03	0.908	0.629
PPARG M11141_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PPARG_Q6	0.908	0.629
PPARD M05581_2.00	Homo sapiens	NRRGGTCAAAGGTCAN	NTGACCTTTGACCYYN	SELEX Yin et al.(2017) PPARD_eDBD_HT-SELEX_1	0.895	0.629
PPARD M05582_2.00	Homo sapiens	HRRGGTCAYGACCYYD	HRRGGTCRTGACCYYD	SELEX Yin et al.(2017) PPARD_eDBD_HT-SELEX_2	0.895	0.629
PPARD M05583_2.00	Homo sapiens	NRRGGTCAAAGGTCRN	NYGACCTTTGACCYYN	SELEX Yin et al.(2017) PPARD_eDBD_Methyl-HT-SELEX_1	0.895	0.629
PPARD M05584_2.00	Homo sapiens	NRRGGTCRCGACCYYN	NRRGGTCGYGACCYYN	SELEX Yin et al.(2017) PPARD_eDBD_Methyl-HT-SELEX_2	0.895	0.629
Eip78C M06427_2.00	Drosophila melanogaster	RGGTCA	TGACCY	B1H Zhu et al.(2011) Eip78C_SANGER_5_FBgn0004865	0.879	0.643
sex-1 M02416_2.00	Caenorhabditis elegans	RAGGTCAH	DTGACCTY	PBM Weirauch et al.(2014) pTH5667	0.876	0.643
CBG17178 M02392_2.00	Caenorhabditis briggsae	RAGGTCAH	DTGACCTY	PBM Weirauch et al.(2014) pTH6634	0.875	0.614
Eip75B M03928_2.00	Drosophila melanogaster	MWVTAGGTCANN	NNTGACCTABWK	SELEX Nitta et al.(2015) Eip75B_1	0.874	0.657
Eip75B M03929_2.00	Drosophila melanogaster	AWNTRGGTCANTRGGTCA	TGACCYANTGACCYANWT	SELEX Nitta et al.(2015) Eip75B_2	0.874	0.657
Eip75B M06416_2.00	Drosophila melanogaster	KWWNTRGGTCA	TGACCYANWWM	B1H Zhu et al.(2011) Eip75B_SANGER_5_FBgn0000568	0.874	0.657
PPARA M09295_2.00	Homo sapiens	NWSTRGGBSARAGGKBA	TVMCCTYTSVCCYASWN	Misc Kulakovskiy et al.(2013) PPARA_HUMAN.H11MO.0.B	0.874	0.614
Ppara M09314_2.00	Mus musculus	HWSTRGGBSARAGGKBA	TVMCCTYTSVCCYASWD	Misc Kulakovskiy et al.(2013) PPARA_MOUSE.H11MO.0.A	0.874	0.614
PPARA M11183_2.00	Homo sapiens	CWRAWCYAGGNCAWAGKTCA	TGAMCTWTGNCCTRGWTYWG	Transfac Matys et al.(2006) V$PPARA_01	0.874	0.614
PPARA M11184_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PPARA_Q6	0.874	0.614
usp M03934_2.00	Drosophila melanogaster	ARRGGTCAAAGGTCA	TGACCTTTGACCYYT	SELEX Nitta et al.(2015) usp_1	0.865	0.557
usp M06426_2.00	Drosophila melanogaster	HRRGGTCAH	DTGACCYYD	B1H Zhu et al.(2011) usp_SANGER_5_FBgn0003964	0.865	0.557
usp M02709_2.00	Drosophila melanogaster	GGGGTCACSN	NSGTGACCCC	SELEX Mathelier et al.(2014) MA0016.1	0.865	0.557
usp M09689_2.00	Drosophila melanogaster	KRGGTCACG	CGTGACCYM	Misc Kulakovskiy et al.(2009) usp	0.865	0.557
usp M11191_2.00	Drosophila melanogaster	GRGGTCAYS	SRTGACCYC	Transfac Matys et al.(2006) I$CF1_01	0.865	0.557
usp M11192_2.00	Drosophila melanogaster	GGGGTCAYS	SRTGACCCC	Transfac Matys et al.(2006) I$CF1_02	0.865	0.557
RARG M02397_2.00	Homo sapiens	VGGTCANN	NNTGACCB	PBM Weirauch et al.(2014) pTH5430	0.862	0.629
Rarg M00810_2.00	Mus musculus	NNVGKTCANN	NNTGAMCBNN	PBM Weirauch et al.(2013) pTH4269	0.862	0.629
RARG M03391_2.00	Homo sapiens	SRGGTCAAAAGGTCAVD	HBTGACCTTTTGACCYS	SELEX Jolma et al.(2013) RARG_1	0.862	0.629
RARG M03392_2.00	Homo sapiens	RAGGTCAHVHWRAGGTCA	TGACCTYWDBDTGACCTY	SELEX Jolma et al.(2013) RARG_2	0.862	0.629
RARG M03393_2.00	Homo sapiens	RRGGTCAHNNRAGGTCA	TGACCTYNNDTGACCYY	SELEX Jolma et al.(2013) RARG_3	0.862	0.629
RARG M03394_2.00	Homo sapiens	GAGGTCAAAAGGTCAY	RTGACCTTTTGACCTC	SELEX Jolma et al.(2013) RARG_4	0.862	0.629
RARG M03395_2.00	Homo sapiens	RAGGTCAABYARRGKTCA	TGAMCYYTRVTTGACCTY	SELEX Jolma et al.(2013) RARG_5	0.862	0.629
RARG M03396_2.00	Homo sapiens	RAGGTCAHBNVRGGTCA	TGACCYBNVDTGACCTY	SELEX Jolma et al.(2013) RARG_6	0.862	0.629
Rarg M03416_2.00	Mus musculus	RRGGTCAAAAGGTCAH	DTGACCTTTTGACCYY	SELEX Jolma et al.(2013) Rarg_1	0.862	0.629
Rarg M03417_2.00	Mus musculus	RAGGTCAWVHAAAGGTCA	TGACCTTTDBWTGACCTY	SELEX Jolma et al.(2013) Rarg_2	0.862	0.629
Rarg M03418_2.00	Mus musculus	AAGGTCAHSARAGGTCA	TGACCTYTSDTGACCTT	SELEX Jolma et al.(2013) Rarg_3	0.862	0.629
RARG M05653_2.00	Homo sapiens	NRGGTCANV	BNTGACCYN	SELEX Yin et al.(2017) RARG_FL_HT-SELEX	0.862	0.629
RARG M05649_2.00	Homo sapiens	DRGGTCAAAAGKTCAN	NTGAMCTTTTGACCYH	SELEX Yin et al.(2017) RARG_eDBD_HT-SELEX_1	0.862	0.629
RARG M05650_2.00	Homo sapiens	RAGGTCATGACCTH	DAGGTCATGACCTY	SELEX Yin et al.(2017) RARG_eDBD_HT-SELEX_2	0.862	0.629
Rarg M05885_2.00	Mus musculus	NRGGTCANDRGKKYA	TRMMCYHNTGACCYN	SMiLE-seq Isakova et al.(2017) RARg	0.862	0.629
RARG M09289_2.00	Homo sapiens	RGGTCAVVVWGNMMNNDV	BHNNKKNCWBBBTGACCY	Misc Kulakovskiy et al.(2013) RARG_HUMAN.H11MO.0.B	0.862	0.629
Rarg M09300_2.00	Mus musculus	RGGTCAVVVWGNMMNNDV	BHNNKKNCWBBBTGACCY	Misc Kulakovskiy et al.(2013) RARG_MOUSE.H11MO.0.C	0.862	0.629
Rarg M09613_2.00	Mus musculus	RGKTCAAGGBCA	TGVCCTTGAMCY	Misc Heinz et al.(2010) ES-RARg_GSE30538	0.862	0.629
RARG M11167_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RARG_Q3	0.862	0.629
RARG M05654_2.00	Homo sapiens	NRGGTCRNV	BNYGACCYN	SELEX Yin et al.(2017) RARG_FL_Methyl-HT-SELEX	0.862	0.629
RARG M05651_2.00	Homo sapiens	DRGGTCAARRGGTCRN	NYGACCYYTTGACCYH	SELEX Yin et al.(2017) RARG_eDBD_Methyl-HT-SELEX_1	0.862	0.629
RARG M05652_2.00	Homo sapiens	DAGKTCRYGACCYY	RRGGTCRYGAMCTH	SELEX Yin et al.(2017) RARG_eDBD_Methyl-HT-SELEX_2	0.862	0.629
Nr2f6 M00811_2.00	Mus musculus	NRRGGTCANN	NNTGACCYYN	PBM Weirauch et al.(2013) pTH2193	0.857	0.557
Nr2f6 M03419_2.00	Mus musculus	RAGGTCAADAGGTCA	TGACCTHTTGACCTY	SELEX Jolma et al.(2013) Nr2f6_1	0.857	0.557
Nr2f6 M03420_2.00	Mus musculus	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) Nr2f6_2	0.857	0.557
Rxra M00181_2.00	Mus musculus	NRRGGTCANN	NNTGACCYYN	PBM Badis et al.(2009) Rxra_1035	0.853	0.557
RXRA M03408_2.00	Homo sapiens	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) RXRA_1	0.853	0.557
RXRA M03409_2.00	Homo sapiens	RRGGTCATGACCYY	RRGGTCATGACCYY	SELEX Jolma et al.(2013) RXRA_2	0.853	0.557
RXRA M03410_2.00	Homo sapiens	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) RXRA_3	0.853	0.557
RXRA M03411_2.00	Homo sapiens	RRGGTCATGACCYY	RRGGTCATGACCYY	SELEX Jolma et al.(2013) RXRA_4	0.853	0.557
Rxra M03421_2.00	Mus musculus	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) Rxra_1	0.853	0.557
Rxra M03422_2.00	Mus musculus	RGGTCATGACCY	RGGTCATGACCY	SELEX Jolma et al.(2013) Rxra_2	0.853	0.557
RXRA M05671_2.00	Homo sapiens	RRGGTCAAAGGTCAN	NTGACCTTTGACCYY	SELEX Yin et al.(2017) RXRA_eDBD_HT-SELEX	0.853	0.557
RXRA M05882_2.00	Homo sapiens	VRGKTBAAAGGTYRH	DYRACCTTTVAMCYB	SMiLE-seq Isakova et al.(2017) RXRa	0.853	0.557
RXRA M07993_2.00	Homo sapiens	NRRGGTCA	TGACCYYN	ChIP-seq Gerstein et al.(2012) H1-hESC_RXRA_HudsonAlpha	0.853	0.557
RXRA M07994_2.00	Homo sapiens	DDNNMRRGGTCANDN	NHNTGACCYYKNNHH	ChIP-seq Gerstein et al.(2012) HepG2_RXRA_HudsonAlpha	0.853	0.557
RXRA M09294_2.00	Homo sapiens	VDDDNDNNVRRRGGKCAVDV	BHBTGMCCYYYBNNHNHHHB	Misc Kulakovskiy et al.(2013) RXRA_HUMAN.H11MO.0.A	0.853	0.557
Rxra M09306_2.00	Mus musculus	DDVNNNNNRAGKTCAAGGYCA	TGRCCTTGAMCTYNNNNNBHH	Misc Kulakovskiy et al.(2013) RXRA_MOUSE.H11MO.0.A	0.853	0.557
RXRA M11182_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RXRA_07	0.853	0.557
RXRA M05672_2.00	Homo sapiens	RRGGTCAAAGGTCAH	DTGACCTTTGACCYY	SELEX Yin et al.(2017) RXRA_eDBD_Methyl-HT-SELEX	0.853	0.557
Rxrb M02402_2.00	Mus musculus	VRGGTCAH	DTGACCYB	PBM Weirauch et al.(2014) pTH2861	0.850	0.571
RXRB M03415_2.00	Homo sapiens	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) RXRB_1	0.850	0.571
Rxrb M03435_2.00	Mus musculus	GRGGTCAAAGGTCA	TGACCTTTGACCYC	SELEX Jolma et al.(2013) Rxrb_1	0.850	0.571
RXRB M05681_2.00	Homo sapiens	RRGGTCAAAGGTCAN	NTGACCTTTGACCYY	SELEX Yin et al.(2017) RXRB_eDBD_HT-SELEX_1	0.850	0.571
RXRB M05682_2.00	Homo sapiens	RRGGTCAYGACCYY	RRGGTCRTGACCYY	SELEX Yin et al.(2017) RXRB_eDBD_HT-SELEX_2	0.850	0.571
RXRB M09297_2.00	Homo sapiens	DSAGGTCASD	HSTGACCTSH	Misc Kulakovskiy et al.(2013) RXRB_HUMAN.H11MO.0.C	0.850	0.571
Rxrb M09330_2.00	Mus musculus	DSAGGTCASD	HSTGACCTSH	Misc Kulakovskiy et al.(2013) RXRB_MOUSE.H11MO.0.C	0.850	0.571
RXRB M05683_2.00	Homo sapiens	RRGGTCAAAGGTCRN	NYGACCTTTGACCYY	SELEX Yin et al.(2017) RXRB_eDBD_Methyl-HT-SELEX_1	0.850	0.571
RXRB M05684_2.00	Homo sapiens	RRGGTCRYGACCYY	RRGGTCRYGACCYY	SELEX Yin et al.(2017) RXRB_eDBD_Methyl-HT-SELEX_2	0.850	0.571
Rxrg M02400_2.00	Mus musculus	VRGGTCAN	NTGACCYB	PBM Weirauch et al.(2014) pTH2880	0.848	0.571
RXRG M03375_2.00	Homo sapiens	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) RXRG_1	0.848	0.571
RXRG M03376_2.00	Homo sapiens	RRGGTCATGACCYY	RRGGTCATGACCYY	SELEX Jolma et al.(2013) RXRG_2	0.848	0.571
RXRG M03377_2.00	Homo sapiens	GRGGTCAAAGGTCA	TGACCTTTGACCYC	SELEX Jolma et al.(2013) RXRG_3	0.848	0.571
RXRG M03378_2.00	Homo sapiens	NRGGTCATGACCYC	GRGGTCATGACCYN	SELEX Jolma et al.(2013) RXRG_4	0.848	0.571
RXRG M02746_2.00	Homo sapiens	GGTCAAAGGTCA	TGACCTTTGACC	SELEX Jolma et al.(2010) RXRG_dimer	0.848	0.571
RXRG M05615_2.00	Homo sapiens	VRGGTCAAAGGTCAN	NTGACCTTTGACCYB	SELEX Yin et al.(2017) RXRG_FL_HT-SELEX_1	0.848	0.571
RXRG M05616_2.00	Homo sapiens	RRGGTCAYGACCYY	RRGGTCRTGACCYY	SELEX Yin et al.(2017) RXRG_FL_HT-SELEX_2	0.848	0.571
RXRG M05879_2.00	Homo sapiens	RGGTBAARGGTBRND	HNYVACCYTTVACCY	SMiLE-seq Isakova et al.(2017) RXRg	0.848	0.571
RXRG M09280_2.00	Homo sapiens	NGTCAAAGGTCAH	DTGACCTTTGACN	Misc Kulakovskiy et al.(2013) RXRG_HUMAN.H11MO.0.B	0.848	0.571
Rxrg M09305_2.00	Mus musculus	VDDVDNSVNRAGKTCAAGGYCA	TGRCCTTGAMCTYNBSNHBHHB	Misc Kulakovskiy et al.(2013) RXRG_MOUSE.H11MO.0.B	0.848	0.571
RXRG M05617_2.00	Homo sapiens	DRGGTBAARGGTBRN	NYVACCYTTVACCYH	SELEX Yin et al.(2017) RXRG_FL_Methyl-HT-SELEX_1	0.848	0.571
RXRG M05618_2.00	Homo sapiens	VRGGTCAYGACCYB	VRGGTCRTGACCYB	SELEX Yin et al.(2017) RXRG_FL_Methyl-HT-SELEX_2	0.848	0.571
AAEL009588 M02388_2.00	Aedes aegypti	NRGGTCR	YGACCYN	PBM Weirauch et al.(2014) pTH5508	0.839	0.600
Hr46 M02406_2.00	Drosophila melanogaster	NRGGTCAN	NTGACCYN	PBM Weirauch et al.(2014) pTH6142	0.839	0.600
Hr46 M03926_2.00	Drosophila melanogaster	RGGTCAGTRGGTCA	TGACCYACTGACCY	SELEX Nitta et al.(2015) Hr46_1	0.839	0.600
Hr46 M06412_2.00	Drosophila melanogaster	AWKTGGGTYW	WRACCCAMWT	B1H Zhu et al.(2011) Hr46_FlyReg_FBgn0000448	0.839	0.600
Hr46 M06413_2.00	Drosophila melanogaster	HWNBAGGTCA	TGACCTVNWD	B1H Zhu et al.(2011) Hr46_SANGER_5_FBgn0000448	0.839	0.600
O77476_BRUPA M02422_2.00	Brugia pahangi	NRGGTCAN	NTGACCYN	PBM Weirauch et al.(2014) pTH6019	0.836	0.557
Rara M00185_2.00	Mus musculus	NRGGTCAN	NTGACCYN	PBM Badis et al.(2009) Rara_1051	0.836	0.614
RARA M03369_2.00	Homo sapiens	RRAGGTCAWBWRRGGTCA	TGACCYYWVWTGACCTYY	SELEX Jolma et al.(2013) RARA_1	0.836	0.614
RARA M03370_2.00	Homo sapiens	RAGGTCAAAAGGTCAWKB	VMWTGACCTTTTGACCTY	SELEX Jolma et al.(2013) RARA_2	0.836	0.614
RARA M03371_2.00	Homo sapiens	AGGTCAHNYWRAGGTCA	TGACCTYWRNDTGACCT	SELEX Jolma et al.(2013) RARA_3	0.836	0.614
RARA M03372_2.00	Homo sapiens	ARGGTCAAAAGGTCA	TGACCTTTTGACCYT	SELEX Jolma et al.(2013) RARA_4	0.836	0.614
RARA M03373_2.00	Homo sapiens	WRRGGTCAHSHRRGGTCA	TGACCYYDSDTGACCYYW	SELEX Jolma et al.(2013) RARA_5	0.836	0.614
RARA M03374_2.00	Homo sapiens	AGGTCAWNNARAGGTCA	TGACCTYTNNWTGACCT	SELEX Jolma et al.(2013) RARA_6	0.836	0.614
Rara M03432_2.00	Mus musculus	AAAGGTCAHBVRAGGTCA	TGACCTYBVDTGACCTTT	SELEX Jolma et al.(2013) Rara_1	0.836	0.614
Rara M03433_2.00	Mus musculus	AGGTCAHNHAAAGGTCA	TGACCTTTDNDTGACCT	SELEX Jolma et al.(2013) Rara_2	0.836	0.614
Rara M03434_2.00	Mus musculus	RAGGTCAAAAGGTCA	TGACCTTTTGACCTY	SELEX Jolma et al.(2013) Rara_3	0.836	0.614
RARA M05607_2.00	Homo sapiens	NVGGKCANNRGGKCAN	NTGMCCYNNTGMCCBN	SELEX Yin et al.(2017) RARA_eDBD_HT-SELEX_1	0.836	0.614
RARA M05608_2.00	Homo sapiens	NVGGKCAYGNCCBN	NVGGNCRTGMCCBN	SELEX Yin et al.(2017) RARA_eDBD_HT-SELEX_2	0.836	0.614
RARA M05609_2.00	Homo sapiens	NRRGGTCANV	BNTGACCYYN	SELEX Yin et al.(2017) RARA_eDBD_HT-SELEX_3	0.836	0.614
RARA M05878_2.00	Homo sapiens	RAGGTCA	TGACCTY	SMiLE-seq Isakova et al.(2017) RARa	0.836	0.614
RARA M09277_2.00	Homo sapiens	RRRDVDBSNDRAGKTCARGG	CCYTGAMCTYHNSVHBHYYY	Misc Kulakovskiy et al.(2013) RARA_HUMAN.H11MO.0.A	0.836	0.614
Rara M09329_2.00	Mus musculus	RGRTCRDRAGKTCAAGGTCA	TGACCTTGAMCTYHYGAYCY	Misc Kulakovskiy et al.(2013) RARA_MOUSE.H11MO.0.A	0.836	0.614
RARA M11137_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NR1B1_Q6	0.836	0.614
RARA M05610_2.00	Homo sapiens	DRGGKCRNDRGGTCRN	NYGACCYHNYGMCCYH	SELEX Yin et al.(2017) RARA_eDBD_Methyl-HT-SELEX_1	0.836	0.614
RARA M05611_2.00	Homo sapiens	NVGGTCAYGMCCYN	NRGGKCRTGACCBN	SELEX Yin et al.(2017) RARA_eDBD_Methyl-HT-SELEX_2	0.836	0.614
RARA M05612_2.00	Homo sapiens	NRAGGTCANN	NNTGACCTYN	SELEX Yin et al.(2017) RARA_eDBD_Methyl-HT-SELEX_3	0.836	0.614
Smp_105090 M02412_2.00	Schistosoma mansoni	RGGTCANN	NNTGACCY	PBM Weirauch et al.(2014) pTH6174	0.835	0.586
Rarb M02401_2.00	Mus musculus	NRRGGTCAHN	NDTGACCYYN	PBM Weirauch et al.(2014) pTH2804	0.833	0.614
RARB M03355_2.00	Homo sapiens	AAAGGTCAARAGGTCA	TGACCTYTTGACCTTT	SELEX Jolma et al.(2013) RARB_1	0.833	0.614
Rarb M03423_2.00	Mus musculus	WAAGGTCAAAAGGTCA	TGACCTTTTGACCTTW	SELEX Jolma et al.(2013) Rarb_1	0.833	0.614
Rarb M03424_2.00	Mus musculus	RRAGGTCANBWRAGGTCA	TGACCTYWVNTGACCTYY	SELEX Jolma et al.(2013) Rarb_2	0.833	0.614
Rarb M03425_2.00	Mus musculus	AGGTCAHVBWRAGGTCA	TGACCTYWVBDTGACCT	SELEX Jolma et al.(2013) Rarb_3	0.833	0.614
RARB M05563_2.00	Homo sapiens	NHAAGGTCAN	NTGACCTTDN	SELEX Yin et al.(2017) RARB_FL_HT-SELEX_1	0.833	0.614
RARB M05564_2.00	Homo sapiens	RRGGTCAARRGGTCAN	NTGACCYYTTGACCYY	SELEX Yin et al.(2017) RARB_FL_HT-SELEX_2	0.833	0.614
RARB M05565_2.00	Homo sapiens	DAGGTCAYGACCYY	RRGGTCRTGACCTH	SELEX Yin et al.(2017) RARB_FL_HT-SELEX_3	0.833	0.614
RARB M11094_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NR1B2_Q6	0.833	0.614
RARB M05566_2.00	Homo sapiens	NHRAGGTCAH	DTGACCTYDN	SELEX Yin et al.(2017) RARB_FL_Methyl-HT-SELEX_1	0.833	0.614
RARB M05567_2.00	Homo sapiens	RRGGTCAHRRGGTCAN	NTGACCYYDTGACCYY	SELEX Yin et al.(2017) RARB_FL_Methyl-HT-SELEX_2	0.833	0.614
RARB M05568_2.00	Homo sapiens	RRGGTCAYGACCYY	RRGGTCRTGACCYY	SELEX Yin et al.(2017) RARB_FL_Methyl-HT-SELEX_3	0.833	0.614
Rorc M09324_2.00	Mus musculus	NDAWSTRRGTCA	TGACYYASWTHN	Misc Kulakovskiy et al.(2013) RORG_MOUSE.H11MO.0.B	0.832	0.586
Rorc M09617_2.00	Mus musculus	AWBTRGGTCA	TGACCYAVWT	Misc Heinz et al.(2010) EL4-RORgt.Flag_GSE56019	0.832	0.586
NR2C2 M03407_2.00	Homo sapiens	VRGGTCAAAGGTCA	TGACCTTTGACCYB	SELEX Jolma et al.(2013) NR2C2_1	0.821	0.543
NR2C2 M05669_2.00	Homo sapiens	NRGGTCRN	NYGACCYN	SELEX Yin et al.(2017) NR2C2_eDBD_HT-SELEX	0.821	0.543
NR2C2 M08156_2.00	Homo sapiens	NVRGGTCARAGGKCA	TGMCCTYTGACCYBN	ChIP-seq Mathelier et al.(2014) MA0504.1	0.821	0.543
NR2C2 M07990_2.00	Homo sapiens	WBYRCTTCCGGGKYV	BRMCCCGGAAGYRVW	ChIP-seq Gerstein et al.(2012) HeLa-S3_TR4_UCD	0.821	0.543
NR2C2 M07991_2.00	Homo sapiens	DWBYRCTTCCGGGKY	RMCCCGGAAGYRVWH	ChIP-seq Gerstein et al.(2012) HepG2b_TR4_UCD	0.821	0.543
NR2C2 M07992_2.00	Homo sapiens	WBYRCTTCCGGGKYR	YRMCCCGGAAGYRVW	ChIP-seq Gerstein et al.(2012) K562b_TR4_UCD	0.821	0.543
NR2C2 M08221_2.00	Homo sapiens	DWBYDCTTCCGGGKY	RMCCCGGAAGHRVWH	ChIP-seq Contrino et al.(2012) Mv97	0.821	0.543
NR2C2 M08222_2.00	Homo sapiens	TCARAGGTCA	TGACCTYTGA	ChIP-seq Contrino et al.(2012) Mv98	0.821	0.543
NR2C2 M09292_2.00	Homo sapiens	RBTYMVRGGTCR	YGACCYBKRAVY	Misc Kulakovskiy et al.(2013) NR2C2_HUMAN.H11MO.0.B	0.821	0.543
Nr2c2 M09303_2.00	Mus musculus	RRGKSARAGGKCA	TGMCCTYTSMCYY	Misc Kulakovskiy et al.(2013) NR2C2_MOUSE.H11MO.0.A	0.821	0.543
NR2C2 M09611_2.00	Homo sapiens	RRGGTCARAGGTCA	TGACCTYTGACCYY	Misc Heinz et al.(2010) Hela-TR4_GSE24685	0.821	0.543
NR2C2 M11173_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NR2C2_03	0.821	0.543
NR2C2 M11174_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NR2C2_04	0.821	0.543
NR2C2 M11175_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TR4_01	0.821	0.543
NR2C2 M11176_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TR4_03	0.821	0.543
NR2C2 M11177_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TR4_Q2_01	0.821	0.543
NR2C2 M11178_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TR4_Q2	0.821	0.543
NR2C2 M11179_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TR4_Q3	0.821	0.543
NR2C2 M05670_2.00	Homo sapiens	NRGGTCRN	NYGACCYN	SELEX Yin et al.(2017) NR2C2_eDBD_Methyl-HT-SELEX	0.821	0.543
Rorb M00820_2.00	Mus musculus	NRGGTCANN	NNTGACCYN	PBM Weirauch et al.(2013) pTH3469	0.819	0.614
rorb M02404_2.00	Tetraodon nigroviridis	NGAGGTCANN	NNTGACCTCN	PBM Weirauch et al.(2014) pTH6589	0.819	0.614
RORB M05677_2.00	Homo sapiens	DAWNTRGGTYAGTRGGTCAN	NTGACCYACTRACCYANWTH	SELEX Yin et al.(2017) RORB_eDBD_HT-SELEX_1	0.819	0.614
RORB M05678_2.00	Homo sapiens	NAWNKRGGTCAYGACCYMNWTN	NAWNKRGGTCRTGACCYMNWTN	SELEX Yin et al.(2017) RORB_eDBD_HT-SELEX_2	0.819	0.614
RORB M05883_2.00	Homo sapiens	AWNBRGGTCAN	NTGACCYVNWT	SMiLE-seq Isakova et al.(2017) RORb	0.819	0.614
RORB M11187_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RORBETA_Q2	0.819	0.614
RORB M05679_2.00	Homo sapiens	DAWBTRGGTYAGTRGGTCRN	NYGACCYACTRACCYAVWTH	SELEX Yin et al.(2017) RORB_eDBD_Methyl-HT-SELEX_1	0.819	0.614
RORB M05680_2.00	Homo sapiens	NAWNKRGGTCAYGACCYMNWTN	NAWNKRGGTCRTGACCYMNWTN	SELEX Yin et al.(2017) RORB_eDBD_Methyl-HT-SELEX_2	0.819	0.614
RORC M02405_2.00	Tetraodon nigroviridis	NGAGGTCANN	NNTGACCTCN	PBM Weirauch et al.(2014) pTH6612	0.813	0.600
Q95WG3_ACRMI M02424_2.00	Acropora millepora	NRAGGTCAN	NTGACCTYN	PBM Weirauch et al.(2014) pTH6144	0.812	0.543
Rora M00819_2.00	Mus musculus	NNRGGTCA	TGACCYNN	PBM Weirauch et al.(2013) pTH3464	0.809	0.600
RORA M03353_2.00	Homo sapiens	NMRAGGTCAAVYYVAGGTCA	TGACCTBRRBTTGACCTYKN	SELEX Jolma et al.(2013) RORA_1	0.809	0.600
RORA M03354_2.00	Homo sapiens	WAWSTRGGTYASTAGGTCA	TGACCTASTRACCYASWTW	SELEX Jolma et al.(2013) RORA_2	0.809	0.600
RORA M02705_2.00	Homo sapiens	WWVDAGGTCA	TGACCTHBWW	SELEX Mathelier et al.(2014) MA0071.1	0.809	0.600
RORA M02706_2.00	Homo sapiens	NDWAWBTAGGTCAN	NTGACCTAVWTWHN	SELEX Mathelier et al.(2014) MA0072.1	0.809	0.600
RORA M09265_2.00	Homo sapiens	VWNDRGGBCARDR	YHYTGVCCYHNWB	Misc Kulakovskiy et al.(2013) RORA_HUMAN.H11MO.0.C	0.809	0.600
Rora M09327_2.00	Mus musculus	VWNDRGGBCARDR	YHYTGVCCYHNWB	Misc Kulakovskiy et al.(2013) RORA_MOUSE.H11MO.0.C	0.809	0.600
RORA M11090_2.00	Homo sapiens	DWWWVDAGGTCAH	DTGACCTHBWWWH	Transfac Matys et al.(2006) V$RORA1_01	0.809	0.600
RORA M11091_2.00	Homo sapiens	DWAWBTAGGTCAN	NTGACCTAVWTWH	Transfac Matys et al.(2006) V$RORA2_01	0.809	0.600
RORA M11092_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RORALPHA_Q4	0.809	0.600
RORA M11093_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RORA_Q4	0.809	0.600
RORC M05621_2.00	Homo sapiens	KRGGTCAYGMCCYM	KRGGKCRTGACCYM	SELEX Yin et al.(2017) RORC_eDBD_HT-SELEX_1	0.807	0.586
RORC M05622_2.00	Homo sapiens	NAWNKRGGTYANTRGGTCAN	NTGACCYANTRACCYMNWTN	SELEX Yin et al.(2017) RORC_eDBD_HT-SELEX_2	0.807	0.586
RORC M05880_2.00	Homo sapiens	NDAWNTRGGKCA	TGMCCYANWTHN	SMiLE-seq Isakova et al.(2017) RORc	0.807	0.586
RORC M09282_2.00	Homo sapiens	NDAWSTRRGTCA	TGACYYASWTHN	Misc Kulakovskiy et al.(2013) RORG_HUMAN.H11MO.0.C	0.807	0.586
RORC M05623_2.00	Homo sapiens	TRGGTCAYGACCYA	TRGGTCRTGACCYA	SELEX Yin et al.(2017) RORC_eDBD_Methyl-HT-SELEX_1	0.807	0.586
RORC M05624_2.00	Homo sapiens	NAWNTRGGTYASTAGGTCAN	NTGACCTASTRACCYANWTN	SELEX Yin et al.(2017) RORC_eDBD_Methyl-HT-SELEX_2	0.807	0.586
NR1D1 M05605_2.00	Homo sapiens	NWWNTRGGTYASTRGGTCAN	NTGACCYASTRACCYANWWN	SELEX Yin et al.(2017) NR1D1_eDBD_HT-SELEX	0.803	0.657
NR1D1 M09276_2.00	Homo sapiens	DRVNMASTGGGNCANDNDN	NHNHNTGNCCCASTKNBYH	Misc Kulakovskiy et al.(2013) NR1D1_HUMAN.H11MO.0.B	0.803	0.657
Nr1d1 M09310_2.00	Mus musculus	DRVNMASTGGGNCANDNDN	NHNHNTGNCCCASTKNBYH	Misc Kulakovskiy et al.(2013) NR1D1_MOUSE.H11MO.0.A	0.803	0.657
NR1D1 M11136_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$REVERBALPHA_Q6	0.803	0.657
NR1D1 M05606_2.00	Homo sapiens	NAWNKRGGTYAGTRGGTCRN	NYGACCYACTRACCYMNWTN	SELEX Yin et al.(2017) NR1D1_eDBD_Methyl-HT-SELEX	0.803	0.657
Hr4 M06435_2.00	Drosophila melanogaster	AAGGTCA	TGACCTT	B1H Zhu et al.(2011) Hr4_SANGER_5_FBgn0023546	0.796	0.529
NR1D2 M05659_2.00	Homo sapiens	DWWNKRKGTYANTRKGTYRN	NYRACMYANTRACMYMNWWH	SELEX Yin et al.(2017) NR1D2_eDBD_HT-SELEX	0.789	0.643
Nr1d2 M09313_2.00	Mus musculus	NVRDVWVTRRGTCANDVDN	NHBHNTGACYYABWBHYBN	Misc Kulakovskiy et al.(2013) NR1D2_MOUSE.H11MO.0.A	0.789	0.643
NR1D2 M05660_2.00	Homo sapiens	NWWNBRGGKYAVTRGGKCRN	NYGMCCYABTRMCCYVNWWN	SELEX Yin et al.(2017) NR1D2_eDBD_Methyl-HT-SELEX	0.789	0.643
Nr2f2 M00184_2.00	Mus musculus	RRGGTCAN	NTGACCYY	PBM Badis et al.(2009) Nr2f2_2192	0.784	0.514
NR2F2 M08157_2.00	Homo sapiens	NNAAGGTCANN	NNTGACCTTNN	ChIP-seq Mathelier et al.(2014) MA1111.1	0.784	0.514
NR2F2 M08223_2.00	Homo sapiens	AAAGGTCA	TGACCTTT	ChIP-seq Contrino et al.(2012) Mv102	0.784	0.514
NR2F2 M08224_2.00	Homo sapiens	GGKCARAGGB	VCCTYTGMCC	ChIP-seq Contrino et al.(2012) Mv104	0.784	0.514
NR2F2 M09293_2.00	Homo sapiens	NARRGGTCADRDN	NHYHTGACCYYTN	Misc Kulakovskiy et al.(2013) COT2_HUMAN.H11MO.0.A	0.784	0.514
Nr2f2 M09325_2.00	Mus musculus	NNHRAGGTCANVD	HBNTGACCTYDNN	Misc Kulakovskiy et al.(2013) COT2_MOUSE.H11MO.0.A	0.784	0.514
NR2F2 M11180_2.00	Homo sapiens	WRRKKTCAARGGYTCA	TGARCCYTTGAMMYYW	Transfac Matys et al.(2006) V$ARP1_01	0.784	0.514
NR2F2 M11181_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$COUPTF2_Q6	0.784	0.514
Nr2c1 M00812_2.00	Mus musculus	NRRGGTCANN	NNTGACCYYN	PBM Weirauch et al.(2013) pTH1284	0.781	0.514
Nr2c1 M02399_2.00	Mus musculus	RRGGTCAH	DTGACCYY	PBM Weirauch et al.(2014) pTH3466	0.781	0.514
NR2C1 M05597_2.00	Homo sapiens	NRGKKCRYGAMMYN	NRKKTCRYGMMCYN	SELEX Yin et al.(2017) NR2C1_eDBD_HT-SELEX_1	0.781	0.514
NR2C1 M05598_2.00	Homo sapiens	NRRGGTCAN	NTGACCYYN	SELEX Yin et al.(2017) NR2C1_eDBD_HT-SELEX_2	0.781	0.514
NR2C1 M09273_2.00	Homo sapiens	RBYVRVAGGTCAB	VTGACCTBYBRVY	Misc Kulakovskiy et al.(2013) NR2C1_HUMAN.H11MO.0.C	0.781	0.514
Nr2c1 M09304_2.00	Mus musculus	RBYVRVAGGTCAB	VTGACCTBYBRVY	Misc Kulakovskiy et al.(2013) NR2C1_MOUSE.H11MO.0.C	0.781	0.514
NR2C1 M05599_2.00	Homo sapiens	NRRGGTCAN	NTGACCYYN	SELEX Yin et al.(2017) NR2C1_eDBD_Methyl-HT-SELEX_1	0.781	0.514
NR2C1 M05600_2.00	Homo sapiens	RRGGTCRYGACCYY	RRGGTCRYGACCYY	SELEX Yin et al.(2017) NR2C1_eDBD_Methyl-HT-SELEX_2	0.781	0.514
nr2f2 M02393_2.00	Danio rerio	NNRGGTCAN	NTGACCYNN	PBM Weirauch et al.(2014) pTH5882	0.780	0.514
Nr2f1 M00822_2.00	Mus musculus	DRGGTCRN	NYGACCYH	PBM Weirauch et al.(2013) pTH3811	0.780	0.514
NR2F1 M03403_2.00	Homo sapiens	RRGGTCAAAGGTCAN	NTGACCTTTGACCYY	SELEX Jolma et al.(2013) NR2F1_1	0.780	0.514
NR2F1 M03404_2.00	Homo sapiens	RRGGTCAARAGGTCAN	NTGACCTYTTGACCYY	SELEX Jolma et al.(2013) NR2F1_2	0.780	0.514
NR2F1 M03405_2.00	Homo sapiens	RRGGTCAN	NTGACCYY	SELEX Jolma et al.(2013) NR2F1_3	0.780	0.514
NR2F1 M03406_2.00	Homo sapiens	NHRRGGTCANVNG	CNBNTGACCYYDN	SELEX Jolma et al.(2013) NR2F1_4	0.780	0.514
NR2F1 M05661_2.00	Homo sapiens	NRGGTCAAAGGTCRN	NYGACCTTTGACCYN	SELEX Yin et al.(2017) NR2F1_eDBD_HT-SELEX_1	0.780	0.514
NR2F1 M05662_2.00	Homo sapiens	VRGGTCANYGACCYY	RRGGTCRNTGACCYB	SELEX Yin et al.(2017) NR2F1_eDBD_HT-SELEX_2	0.780	0.514
NR2F1 M05665_2.00	Homo sapiens	VRGGTCAAAGGTCAN	NTGACCTTTGACCYB	SELEX Yin et al.(2017) NR2F1_FL_HT-SELEX_1	0.780	0.514
NR2F1 M05666_2.00	Homo sapiens	RRGGTCANYGACCYY	RRGGTCRNTGACCYY	SELEX Yin et al.(2017) NR2F1_FL_HT-SELEX_2	0.780	0.514
NR2F1 M09291_2.00	Homo sapiens	NRRRBSRRRGGKCANVN	NBNTGMCCYYYSVYYYN	Misc Kulakovskiy et al.(2013) COT1_HUMAN.H11MO.0.C	0.780	0.514
Nr2f1 M09334_2.00	Mus musculus	YARAGGTCA	TGACCTYTR	Misc Kulakovskiy et al.(2013) COT1_MOUSE.H11MO.0.B	0.780	0.514
NR2F1 M11172_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$COUPTF1_Q6_01	0.780	0.514
NR2F1 M05663_2.00	Homo sapiens	NRGGTCAAAGGTCRN	NYGACCTTTGACCYN	SELEX Yin et al.(2017) NR2F1_eDBD_Methyl-HT-SELEX_1	0.780	0.514
NR2F1 M05664_2.00	Homo sapiens	NRGGTCANYGACCYH	DRGGTCRNTGACCYN	SELEX Yin et al.(2017) NR2F1_eDBD_Methyl-HT-SELEX_2	0.780	0.514
NR2F1 M05667_2.00	Homo sapiens	NRGGTCAAAGGTCRN	NYGACCTTTGACCYN	SELEX Yin et al.(2017) NR2F1_FL_Methyl-HT-SELEX_1	0.780	0.514
NR2F1 M05668_2.00	Homo sapiens	RRGGTCRNYGACCYY	RRGGTCRNYGACCYY	SELEX Yin et al.(2017) NR2F1_FL_Methyl-HT-SELEX_2	0.780	0.514
NR2F6 M02396_2.00	Homo sapiens	NNRGGTCR	YGACCYNN	PBM Weirauch et al.(2014) pTH6747	0.780	0.543
NR2F6 M03386_2.00	Homo sapiens	RRGGTCAAAAGGTCA	TGACCTTTTGACCYY	SELEX Jolma et al.(2013) NR2F6_1	0.780	0.543
NR2F6 M03387_2.00	Homo sapiens	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) NR2F6_2	0.780	0.543
NR2F6 M03388_2.00	Homo sapiens	NRGGTCAAAGGTCA	TGACCTTTGACCYN	SELEX Jolma et al.(2013) NR2F6_3	0.780	0.543
NR2F6 M05641_2.00	Homo sapiens	RRGGTCAAAGGTCAN	NTGACCTTTGACCYY	SELEX Yin et al.(2017) NR2F6_eDBD_HT-SELEX_1	0.780	0.543
NR2F6 M05642_2.00	Homo sapiens	RAGGTCANTGACCTY	RAGGTCANTGACCTY	SELEX Yin et al.(2017) NR2F6_eDBD_HT-SELEX_2	0.780	0.543
NR2F6 M05645_2.00	Homo sapiens	NRGGTCARAGGTCRN	NYGACCTYTGACCYN	SELEX Yin et al.(2017) NR2F6_FL_HT-SELEX_1	0.780	0.543
NR2F6 M05646_2.00	Homo sapiens	NRGGTCANYGACCYY	RRGGTCRNTGACCYN	SELEX Yin et al.(2017) NR2F6_FL_HT-SELEX_2	0.780	0.543
NR2F6 M11153_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$EAR2_Q2	0.780	0.543
NR2F6 M11154_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$EAR2_Q4	0.780	0.543
NR2F6 M05643_2.00	Homo sapiens	RRGGTCAAAGGTCRN	NYGACCTTTGACCYY	SELEX Yin et al.(2017) NR2F6_eDBD_Methyl-HT-SELEX_1	0.780	0.543
NR2F6 M05644_2.00	Homo sapiens	RRGGTCRNYGACCYY	RRGGTCRNYGACCYY	SELEX Yin et al.(2017) NR2F6_eDBD_Methyl-HT-SELEX_2	0.780	0.543
NR2F6 M05647_2.00	Homo sapiens	NRGGTYADRGGKBRN	NYVMCCYHTRACCYN	SELEX Yin et al.(2017) NR2F6_FL_Methyl-HT-SELEX_1	0.780	0.543
NR2F6 M05648_2.00	Homo sapiens	NRGGTCANYGACCYN	NRGGTCRNTGACCYN	SELEX Yin et al.(2017) NR2F6_FL_Methyl-HT-SELEX_2	0.780	0.543
THRA M03368_2.00	Homo sapiens	DTGACCTYATVAGGTCAH	DTGACCTBATRAGGTCAH	SELEX Jolma et al.(2013) THRA_1	0.767	0.571
THRA M09275_2.00	Homo sapiens	RGKWSDNNYVAGGWSAN	NTSWCCTBRNNHSWMCY	Misc Kulakovskiy et al.(2013) THA_HUMAN.H11MO.0.C	0.767	0.571
Thra M09333_2.00	Mus musculus	VRGGKCANNYVRGGHCA	TGDCCYBRNNTGMCCYB	Misc Kulakovskiy et al.(2013) THA_MOUSE.H11MO.0.C	0.767	0.571
Thra M09619_2.00	Mus musculus	GGKCANNYVRGGHCA	TGDCCYBRNNTGMCC	Misc Heinz et al.(2010) C17.2-THRa_GSE38347	0.767	0.571
THRA M11135_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$T3RALPHA_Q6	0.767	0.571
GAG_AVIER M11193_2.00	Avian erythroblastosis virus	VHNTRAGGTCACSSNN	NNSSGTGACCTYANDB	Transfac Matys et al.(2006) V$T3R_01	0.764	0.557
Hr78 M06430_2.00	Drosophila melanogaster	HVAGGTCA	TGACCTBD	B1H Zhu et al.(2011) Hr78_SANGER_5_FBgn0015239	0.761	0.529
THRB M03379_2.00	Homo sapiens	DTGACCTBATVAGGTCAN	NTGACCTBATVAGGTCAH	SELEX Jolma et al.(2013) THRB_1	0.760	0.557
THRB M03380_2.00	Homo sapiens	DTGACCTBANTRAGGTCAH	DTGACCTYANTVAGGTCAH	SELEX Jolma et al.(2013) THRB_2	0.760	0.557
THRB M03381_2.00	Homo sapiens	NTGWCCTYADNTRAGGTCAH	DTGACCTYANHTRAGGWCAN	SELEX Jolma et al.(2013) THRB_3	0.760	0.557
THRB M05629_2.00	Homo sapiens	NRGGTCAAAGGTCRN	NYGACCTTTGACCYN	SELEX Yin et al.(2017) THRB_eDBD_HT-SELEX_1	0.760	0.557
THRB M05630_2.00	Homo sapiens	NRRGGTCAYGACCYYN	NRRGGTCRTGACCYYN	SELEX Yin et al.(2017) THRB_eDBD_HT-SELEX_2	0.760	0.557
THRB M05633_2.00	Homo sapiens	NTGWCCTBRNYVAGGWCAN	NTGWCCTBRNYVAGGWCAN	SELEX Yin et al.(2017) THRB_FL_HT-SELEX_1	0.760	0.557
THRB M05634_2.00	Homo sapiens	TRAGGTCABVYVAGGTCAH	DTGACCTBRBVTGACCTYA	SELEX Yin et al.(2017) THRB_FL_HT-SELEX_2	0.760	0.557
THRB M09285_2.00	Homo sapiens	VRVSYVABVKSAGGWCA	TGWCCTSMBVTBRSBYB	Misc Kulakovskiy et al.(2013) THB_HUMAN.H11MO.0.C	0.760	0.557
THRB M11150_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$T3RBETA_Q6_01	0.760	0.557
THRB M05631_2.00	Homo sapiens	NRGGTYRDRGGKYRN	NYRMCCYHYRACCYN	SELEX Yin et al.(2017) THRB_eDBD_Methyl-HT-SELEX_1	0.760	0.557
THRB M05632_2.00	Homo sapiens	NNRGGTCAYGACCYBN	NVRGGTCRTGACCYNN	SELEX Yin et al.(2017) THRB_eDBD_Methyl-HT-SELEX_2	0.760	0.557
THRB M05635_2.00	Homo sapiens	NTGWCCTBRNYVAGGWCAN	NTGWCCTBRNYVAGGWCAN	SELEX Yin et al.(2017) THRB_FL_Methyl-HT-SELEX_1	0.760	0.557
THRB M05636_2.00	Homo sapiens	YRAGGWCAYGYRAGGWCAH	DTGWCCTYRCRTGWCCTYR	SELEX Yin et al.(2017) THRB_FL_Methyl-HT-SELEX_2	0.760	0.557
Q969A9_BOMMO M02410_2.00	Bombyx mori	VRGGTCDN	NHGACCYB	PBM Weirauch et al.(2014) pTH5516	0.752	0.514
svp M06423_2.00	Drosophila melanogaster	ARGGTCA	TGACCYK	B1H Zhu et al.(2011) svp_SANGER_5_FBgn0003651	0.751	0.514
For this family, TFs with SR scores > 0.745* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSCINP00000004784	Nuclear receptor	45	115	MPCKVCGDKSSGVHYGVYSCEGCKGFFRRTIHQKIKYRSCILDRTCSITKINRNRCQTCRFMKCLYVGMSK

Links
Other Nuclear receptor family TFs
Other *Ciona intestinalis* TFs

2182 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL002902	Aedes aegypti	AAEL002902	I
AALB010655	Anopheles albimanus	AALB010655	I
Aan_R001044	Calypte anna	Aan_R001044	I
Aan_R002857	Calypte anna	Aan_R002857	I
AARA000771	Anopheles arabiensis	AARA000771	I
AATE005140	Anopheles atroparvus	AATE005140	I
ACEP23430	Atta cephalotes	ACEP23430	I
ACHR006076	Anopheles christyi	ACHR006076	I
ACOM023427	Anopheles coluzzii	ACOM023427	I
ACUA022223	Anopheles culicifacies	ACUA022223	I
ACYPI001448	Acyrthosiphon pisum	ACYPI001448	I
ADIR004364	Anopheles dirus	ADIR004364	I
AEPI000695	Anopheles epiroticus	AEPI000695	I
AFAF020800	Anopheles farauti	AFAF020800	I
Afo_R010658	Aptenodytes forsteri	Afo_R010658	I
Afo_R013292	Aptenodytes forsteri	Afo_R013292	I
AFUN009694	Anopheles funestus	AFUN009694	I
AGAP011985	Anopheles gambiae	AGAP011985	I
Alligator_sinensis_CCG002585.1	Alligator sinensis	Alligator_sinensis_CCG002585.1	I
Alligator_sinensis_CCG005115.1	Alligator sinensis	Alligator_sinensis_CCG005115.1	I
Alligator_sinensis_CCG008488.1	Alligator sinensis	Alligator_sinensis_CCG008488.1	I
AMEC000330	Anopheles melas	AMEC000330	I
AMEM016167	Anopheles merus	AMEM016167	I
AMIN004405	Anopheles minimus	AMIN004405	I
AQUA008654	Anopheles quadriannulatus	AQUA008654	I
ASTEI05879	Anopheles stephensi	ASTEI05879	I
A_07561	Schistosoma haematobium	A_07561	I
BGIBMGA008990	Bombyx mori	BGIBMGA008990	I
BGLB003400	Biomphalaria glabrata	BGLB003400	I
BGLB010605	Biomphalaria glabrata	BGLB010605	I
Brh_R012765	Buceros rhinoceros	Brh_R012765	I
CapteG111042	Capitella teleta	CapteG111042	I
CapteG154829	Capitella teleta	CapteG154829	I
Cflo_04586--NP_001011637.1_APIME	Camponotus floridanus	Cflo_04586--NP_001011637.1_APIME	I
CGI_10006631	Crassostrea gigas	CGI_10006631	I
CGI_10013641	Crassostrea gigas	CGI_10013641	I
CLEC011700	Cimex lectularius	CLEC011700	I
Cmyd_10002489	Chelonia mydas	Cmyd_10002489	I
Cmyd_10006750	Chelonia mydas	Cmyd_10006750	I
CPIJ012827	Culex quinquefasciatus	CPIJ012827	I
CPIJ012828	Culex quinquefasciatus	CPIJ012828	I
CpipJ_CPIJ012827	Culex pipiens	CpipJ_CPIJ012827	I
CpipJ_CPIJ012828	Culex pipiens	CpipJ_CPIJ012828	I
csin110283	Clonorchis sinensis	csin110283	I
D915_00417	Fasciola hepatica	D915_00417	I
D917_00468	Trichinella nativa	D917_00468	I
D918_07072	Trichuris suis	D918_07072	I
DAPPUDRAFT_320202	Daphnia pulex	DAPPUDRAFT_320202	I
DILT_0001206901	Diphyllobothrium latum	DILT_0001206901	I
ECANG7_02703	Echinococcus canadensis	ECANG7_02703	I
ECPE_0000551801	Echinostoma caproni	ECPE_0000551801	I
EFV58362	Trichinella spiralis	EFV58362	I
EmuJ_000663800	Echinococcus multilocularis	EmuJ_000663800	I
ENSACAG00000009715	Anolis carolinensis	ENSACAG00000009715	I
twist1	Anolis carolinensis	ENSACAG00000011825	I
ENSACAG00000015086	Anolis carolinensis	ENSACAG00000015086	I
ENSAMEG00000008556	Ailuropoda melanoleuca	ENSAMEG00000008556	I
ENSAMEG00000020165	Ailuropoda melanoleuca	ENSAMEG00000020165	I
ENSAMXG00000024993	Astyanax mexicanus	ENSAMXG00000024993	I
ENSAMXG00000025039	Astyanax mexicanus	ENSAMXG00000025039	I
ENSAMXG00000025095	Astyanax mexicanus	ENSAMXG00000025095	I
ENSAMXG00000025610	Astyanax mexicanus	ENSAMXG00000025610	I
ENSAMXG00000025657	Astyanax mexicanus	ENSAMXG00000025657	I
ENSAPLG00000000878	Anas platyrhynchos	ENSAPLG00000000878	I
ENSAPLG00000007177	Anas platyrhynchos	ENSAPLG00000007177	I
TWIST2	Bos taurus	ENSBTAG00000021444	I
TWIST1	Bos taurus	ENSBTAG00000046922	I
TWIST2	Canis familiaris	ENSCAFG00000012469	I
TWIST2	Callithrix jacchus	ENSCJAG00000023006	I
TWIST2	Cavia porcellus	ENSCPOG00000025980	I
ENSCSAG00000018801	Chlorocebus sabaeus	ENSCSAG00000018801	I
ENSCSAG00000019610	Chlorocebus sabaeus	ENSCSAG00000019610	I
twist3	Danio rerio	ENSDARG00000019646	I
twist1a	Danio rerio	ENSDARG00000030402	I
twist1b	Danio rerio	ENSDARG00000076010	I
twist2	Danio rerio	ENSDARG00000078266	I
TWIST2	Dasypus novemcinctus	ENSDNOG00000002434	I
TWIST1	Dasypus novemcinctus	ENSDNOG00000037354	I
ENSDORG00000012866	Dipodomys ordii	ENSDORG00000012866	I
TWIST1	Erinaceus europaeus	ENSEEUG00000015333	I
TWIST2	Echinops telfairi	ENSETEG00000009809	I
ENSETEG00000013115	Echinops telfairi	ENSETEG00000013115	I
ENSFALG00000009781	Ficedula albicollis	ENSFALG00000009781	I
ENSFALG00000014990	Ficedula albicollis	ENSFALG00000014990	I
ENSFALG00000015081	Ficedula albicollis	ENSFALG00000015081	I
TWIST1	Homo sapiens	ENSG00000122691	D
TWIST2	Homo sapiens	ENSG00000233608	I
twist2	Gasterosteus aculeatus	ENSGACG00000002227	I
twist3b	Gasterosteus aculeatus	ENSGACG00000004773	I
TWIST1	Gasterosteus aculeatus	ENSGACG00000006420	I
twist3	Gasterosteus aculeatus	ENSGACG00000007963	I
twist1b	Gasterosteus aculeatus	ENSGACG00000008070	I
ENSGALG00000004274	Gallus gallus	ENSGALG00000004274	I
ENSGALG00000006321	Gallus gallus	ENSGALG00000006321	I
ENSGALG00000026059	Gallus gallus	ENSGALG00000026059	I
ENSGMOG00000002790	Gadus morhua	ENSGMOG00000002790	I
ENSGMOG00000003155	Gadus morhua	ENSGMOG00000003155	I
ENSLACG00000012096	Latimeria chalumnae	ENSLACG00000012096	I
ENSLACG00000013366	Latimeria chalumnae	ENSLACG00000013366	I
ENSLACG00000019113	Latimeria chalumnae	ENSLACG00000019113	I
TWIST2	Loxodonta africana	ENSLAFG00000032174	I
ENSLOCG00000017835	Lepisosteus oculatus	ENSLOCG00000017835	I
ENSLOCG00000018198	Lepisosteus oculatus	ENSLOCG00000018198	I
ENSLOCG00000018350	Lepisosteus oculatus	ENSLOCG00000018350	I
ENSMEUG00000013853	Macropus eugenii	ENSMEUG00000013853	I
ENSMGAG00000002218	Meleagris gallopavo	ENSMGAG00000002218	I
TWIST1	Meleagris gallopavo	ENSMGAG00000009311	I
TWIST1	Myotis lucifugus	ENSMLUG00000007047	I
TWIST2	Myotis lucifugus	ENSMLUG00000023316	I
TWIST1	Macaca mulatta	ENSMMUG00000011173	I
TWIST2	Macaca mulatta	ENSMMUG00000021909	I
ENSMODG00000001412	Monodelphis domestica	ENSMODG00000001412	I
TWIST1	Monodelphis domestica	ENSMODG00000023924	I
ENSMPUG00000019429	Mustela putorius furo	ENSMPUG00000019429	I
Twist2	Mus musculus	ENSMUSG00000007805	D
Twist1	Mus musculus	ENSMUSG00000035799	D
ENSNLEG00000011342	Nomascus leucogenys	ENSNLEG00000011342	I
ENSNLEG00000019264	Nomascus leucogenys	ENSNLEG00000019264	I
TWIST1	Ornithorhynchus anatinus	ENSOANG00000009614	I
ENSOANG00000012950	Ornithorhynchus anatinus	ENSOANG00000012950	I
ENSOARG00000000265	Ovis aries	ENSOARG00000000265	I
ENSOARG00000009754	Ovis aries	ENSOARG00000009754	I
TWIST2	Oryctolagus cuniculus	ENSOCUG00000004073	I
TWIST2	Otolemur garnettii	ENSOGAG00000029007	I
ENSONIG00000020502	Oreochromis niloticus	ENSONIG00000020502	I
ENSONIG00000020610	Oreochromis niloticus	ENSONIG00000020610	I
ENSONIG00000021177	Oreochromis niloticus	ENSONIG00000021177	I
ENSONIG00000021342	Oreochromis niloticus	ENSONIG00000021342	I
TWIST2	Ochotona princeps	ENSOPRG00000017069	I
TWIST1	Oryzias latipes	ENSORLG00000004012	I
twist1	Oryzias latipes	ENSORLG00000007251	I
twist3	Oryzias latipes	ENSORLG00000016373	I
twist2	Oryzias latipes	ENSORLG00000018096	I
ENSP00000405176-D1	Bos grunniens	ENSP00000405176-D1	I
ENSPANG00000001578	Papio anubis	ENSPANG00000001578	I
ENSPFOG00000019887	Poecilia formosa	ENSPFOG00000019887	I
ENSPFOG00000020053	Poecilia formosa	ENSPFOG00000020053	I
ENSPFOG00000020314	Poecilia formosa	ENSPFOG00000020314	I
ENSPFOG00000020501	Poecilia formosa	ENSPFOG00000020501	I
ENSPMAG00000003993	Petromyzon marinus	ENSPMAG00000003993	I
ENSPMAG00000010126	Petromyzon marinus	ENSPMAG00000010126	I
ENSPPYG00000017754	Pongo abelii	ENSPPYG00000017754	I
ENSPSIG00000001961	Pelodiscus sinensis	ENSPSIG00000001961	I
ENSPSIG00000012843	Pelodiscus sinensis	ENSPSIG00000012843	I
ENSPTRG00000018960	Pan troglodytes	ENSPTRG00000018960	I
TWIST2	Pan troglodytes	ENSPTRG00000033910	I
TWIST1	Pteropus vampyrus	ENSPVAG00000001710	I
Twist1	Rattus norvegicus	ENSRNOG00000011101	I
Twist2	Rattus norvegicus	ENSRNOG00000020355	I
ENSSHAG00000003328	Sarcophilus harrisii	ENSSHAG00000003328	I
TWIST1	Sus scrofa	ENSSSCG00000015370	I
TWIST2	Sus scrofa	ENSSSCG00000016343	I
ENSSTOG00000004633	Ictidomys tridecemlineatus	ENSSTOG00000004633	I
TWIST1	Taeniopygia guttata	ENSTGUG00000002643	I
ENSTGUG00000003194	Taeniopygia guttata	ENSTGUG00000003194	I
ENSTGUG00000003756	Taeniopygia guttata	ENSTGUG00000003756	I
twist3	Tetraodon nigroviridis	ENSTNIG00000000441	I
twist2	Tetraodon nigroviridis	ENSTNIG00000001562	I
TWIST1	Tetraodon nigroviridis	ENSTNIG00000001678	I
twist1b	Tetraodon nigroviridis	ENSTNIG00000018440	I
twist2	Takifugu rubripes	ENSTRUG00000006090	I
twist3	Takifugu rubripes	ENSTRUG00000011374	I
twist3	Takifugu rubripes	ENSTRUG00000012607	I
twist1	Takifugu rubripes	ENSTRUG00000015797	I
ENSXMAG00000019787	Xiphophorus maculatus	ENSXMAG00000019787	I
ENSXMAG00000019956	Xiphophorus maculatus	ENSXMAG00000019956	I
ENSXMAG00000019999	Xiphophorus maculatus	ENSXMAG00000019999	I
ENSXMAG00000020062	Xiphophorus maculatus	ENSXMAG00000020062	I
ENSXMAG00000020142	Xiphophorus maculatus	ENSXMAG00000020142	I
estExt_gwp.C_4170045	Branchiostoma floridae	estExt_gwp.C_4170045	I
twi	Drosophila melanogaster	FBgn0003900	D
twi	Drosophila simulans	FBgn0016355	I
twi	Drosophila virilis	FBgn0020065	I
twi	Drosophila erecta	FBgn0064598	I
GF13559	Drosophila ananassae	FBgn0090588	I
GH20971	Drosophila grimshawi	FBgn0128433	I
GI21307	Drosophila mojavensis	FBgn0144037	I
GL11229	Drosophila persimilis	FBgn0148838	I
GM15978	Drosophila sechellia	FBgn0170894	I
GK19547	Drosophila willistoni	FBgn0221545	I
twi	Drosophila pseudoobscura	FBgn0243556	I
fgenesh2_pm.scaffold_217000008	Branchiostoma floridae	fgenesh2_pm.scaffold_217000008	I
GB40416	Apis mellifera	GB40416	I
Gfo_R012065	Geospiza fortis	Gfo_R012065	I
Gfo_R014393	Geospiza fortis	Gfo_R014393	I
HDID_0001003601	Hymenolepis diminuta	HDID_0001003601	I
HelroG155122	Helobdella robusta	HelroG155122	I
HMEL011603	Heliconius melpomene	HMEL011603	I
HmN_000912800	Hymenolepis microstoma	HmN_000912800	I
HNAJ_0000179601	Hymenolepis nana	HNAJ_0000179601	I
Hsal_01530--NP_001011637.1_APIME	Harpegnathos saltator	Hsal_01530--NP_001011637.1_APIME	I
ISCW009433	Ixodes scapularis	ISCW009433	I
KGM_08280	Danaus plexippus	KGM_08280	I
L798_05856	Zootermopsis nevadensis	L798_05856	I
LCUP006189	Lucilia cuprina	LCUP006189	I
LDEC006528	Leptinotarsa decemlineata	LDEC006528	I
LLOJ002131	Lutzomyia longipalpis	LLOJ002131	I
LotgiG179182	Lottia gigantea	LotgiG179182	I
MCOS_0000111401	Mesocestoides corti	MCOS_0000111401	I
MDOA005417	Musca domestica	MDOA005417	I
Myotis_brandtii_Twist1_10031742	Myotis brandtii	Myotis_brandtii_Twist1_10031742	I
NEMVEDRAFT_v1g234699	Nematostella vectensis	NEMVEDRAFT_v1g234699	I
NV10141	Nasonia vitripennis	NV10141	I
Ocbimv22015922m.g	Octopus bimaculoides	Ocbimv22015922m.g	I
Ogr01719	Ophisaurus gracilis	Ogr01719	I
Ogr06591	Ophisaurus gracilis	Ogr06591	I
Ogr11552	Ophisaurus gracilis	Ogr11552	I
Ogr11553	Ophisaurus gracilis	Ogr11553	I
PHUM396880	Pediculus humanus	PHUM396880	I
PPAI002101	Phlebotomus papatasi	PPAI002101	I
Pvit_02271	Pogona vitticeps	Pvit_02271	I
Pvit_05844	Pogona vitticeps	Pvit_05844	I
PXEA_0000232401	Protopolystoma xenopodis	PXEA_0000232401	I
RPRC000323	Rhodnius prolixus	RPRC000323	I
Sakowv30001350m.g	Saccoglossus kowalevskii	Sakowv30001350m.g	I
SCUD_0002255501	Schistosoma curassoni	SCUD_0002255501	I
SINV20920	Solenopsis invicta	SINV20920	I
Sjc_0042560	Schistosoma japonicum	Sjc_0042560	I
Smp_203270	Schistosoma mansoni	Smp_203270	I
SMU15037660	Schmidtea mediterranea	SMU15037660	I
SPU_030059	Strongylocentrotus purpuratus	SPU_030059	I
SSLN_0000059301	Schistocephalus solidus	SSLN_0000059301	I
TASK_0000180901	Taenia asiatica	TASK_0000180901	I
TC014598	Tribolium castaneum	TC014598	I
TMUE_s0004013100	Trichuris muris	TMUE_s0004013100	I
TRE_0001282801	Trichobilharzia regenti	TRE_0001282801	I
TsM_000716700	Taenia solium	TsM_000716700	I
TTAC_0000855201	Hydatigera taeniaeformis	TTAC_0000855201	I
TTRE_0000397101	Trichuris trichiura	TTRE_0000397101	I
twist1	Xenopus tropicalis	XB-GENE-479802	I
twist2	Xenopus tropicalis	XB-GENE-5878700	I
twist1.L	Xenopus laevis	XB-GENE-6255840	I
twist1.S	Xenopus laevis	XB-GENE-865309	I
YQE_04855	Dendroctonus ponderosae	YQE_04855	I

ENSCING00000002352 (Ciona intestinalis) Nuclear receptor

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

2182 Related TFs

ENSCING00000002352 **(Ciona intestinalis)
Nuclear receptor**