Gfo_R003636 (Geospiza fortis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 Gfo_R003636 T306740_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PGR
M03923_2.00 		Homo sapiens
DGNACANNNYGTNCY
RGNACRNNNTGTNCH		 SELEX
Nitta et al.(2015)
PGR_1 		0.993 1.000
PGR
M09266_2.00 		Homo sapiens
RGNACWBYBTGTNCYN
NRGNACAVRVWGTNCY		 Misc
Kulakovskiy et al.(2013)
PRGR_HUMAN.H11MO.0.A 		0.993 1.000
Pgr
M09326_2.00 		Mus musculus
RGNACWBYNTGTNCY
RGNACANRVWGTNCY		 Misc
Kulakovskiy et al.(2013)
PRGR_MOUSE.H11MO.0.A 		0.993 1.000
PGR
M09603_2.00 		Homo sapiens
RNACWNNNWGTNCHN
NDGNACWNNNWGTNY		 Misc
Heinz et al.(2010)
T47D-PR_GSE31130 		0.993 1.000
PGR
M11095_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PR_01 		0.993 1.000
PGR
M11096_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PR_02 		0.993 1.000
PGR
M11097_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PR_Q6 		0.993 1.000
NR3C2
M02395_2.00 		Homo sapiens
NNRGDACAN
NTGTHCYNN		 PBM
Weirauch et al.(2014)
pTH5924 		0.990 0.900
NR3C2
M03382_2.00 		Homo sapiens
NRGDACAHDRTGTHCYN
NRGDACAYHDTGTHCYN		 SELEX
Jolma et al.(2013)
NR3C2_1 		0.990 0.900
NR3C2
M05637_2.00 		Homo sapiens
NGNACRNNNYGTNCN
NGNACRNNNYGTNCN		 SELEX
Yin et al.(2017)
NR3C2_eDBD_HT-SELEX 		0.990 0.900
NR3C2
M05638_2.00 		Homo sapiens
NGNACRNNVYGTNCN
NGNACRBNNYGTNCN		 SELEX
Yin et al.(2017)
NR3C2_eDBD_Methyl-HT-SELEX 		0.990 0.900
Nr3c1
M05886_2.00 		Mus musculus
DGDACDBYNTGTNCY
RGNACANRVHGTHCH		 SMiLE-seq
Isakova et al.(2017)
GR 		0.989 0.886
Nr3c1
M09318_2.00 		Mus musculus
RGNACABYNTGTNCY
RGNACANRVTGTNCY		 Misc
Kulakovskiy et al.(2013)
GCR_MOUSE.H11MO.0.A 		0.989 0.886
Nr3c1
M09614_2.00 		Mus musculus
NRGDACABNNTGTNC
GNACANNVTGTHCYN		 Misc
Heinz et al.(2010)
RAW264.7-GRE_Unpublished 		0.989 0.886
NR3C1
M03366_2.00 		Homo sapiens
NRGWACAYNRTGTWCYH
DRGWACAYNRTGTWCYN		 SELEX
Jolma et al.(2013)
NR3C1_1 		0.984 0.843
NR3C1
M05587_2.00 		Homo sapiens
RGDACAYWDTGTHCY
RGDACAHWRTGTHCY		 SELEX
Yin et al.(2017)
NR3C1_eDBD_HT-SELEX 		0.984 0.843
NR3C1
M07986_2.00 		Homo sapiens
DGNACABYBTGTNC
GNACAVRVTGTNCH		 ChIP-seq
Gerstein et al.(2012)
A549_GR_HudsonAlpha 		0.984 0.843
NR3C1
M07987_2.00 		Homo sapiens
NNNNRGNACAYBBTGTHCYNN
NNRGDACAVVRTGTNCYNNNN		 ChIP-seq
Gerstein et al.(2012)
ECC-1_GR_HudsonAlpha 		0.984 0.843
NR3C1
M09270_2.00 		Homo sapiens
DGNACABKNTGTNCY
RGNACANMVTGTNCH		 Misc
Kulakovskiy et al.(2013)
GCR_HUMAN.H11MO.0.A 		0.984 0.843
NR3C1
M09607_2.00 		Homo sapiens
NRGNACABNVTGTNCY
RGNACABNVTGTNCYN		 Misc
Heinz et al.(2010)
A549-GR_GSE32465 		0.984 0.843
NR3C1
M11119_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GR_01 		0.984 0.843
NR3C1
M11120_2.00 		Homo sapiens
KKYACMRDVTGTYCTK
MAGRACABHYKGTRMM		 Transfac
Matys et al.(2006)
V$GRE_C 		0.984 0.843
NR3C1
M11121_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GR_Q4 		0.984 0.843
NR3C1
M11122_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GR_Q6_01 		0.984 0.843
NR3C1
M11123_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GR_Q6_02 		0.984 0.843
NR3C1
M11124_2.00 		Homo sapiens
NNWGVACANWDNNDNBHNN
NNDVNHNNHWNTGTBCWNN		 Transfac
Matys et al.(2006)
V$GR_Q6 		0.984 0.843
NR3C1
M11125_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NR3C1_04 		0.984 0.843
NR3C1
M05588_2.00 		Homo sapiens
RGDACANDRYGTHCY
RGDACRYHNTGTHCY		 SELEX
Yin et al.(2017)
NR3C1_eDBD_Methyl-HT-SELEX 		0.984 0.843
Ar
M00821_2.00 		Mus musculus
NRRGAACAYN
NRTGTTCYYN		 PBM
Weirauch et al.(2013)
pTH1739 		0.977 0.800
AR
M03389_2.00 		Homo sapiens
DRGWACRHVDYGTWCCY
RGGWACRHBDYGTWCYH		 SELEX
Jolma et al.(2013)
AR_1 		0.977 0.800
AR
M03390_2.00 		Homo sapiens
DRGWACAYNRTGTWCYY
RRGWACAYNRTGTWCYH		 SELEX
Jolma et al.(2013)
AR_2 		0.977 0.800
Ar
M03436_2.00 		Mus musculus
NRGHACAYNVYGTWCYN
NRGWACRBNRTGTDCYN		 SELEX
Jolma et al.(2013)
Ar_1 		0.977 0.800
AR
M09288_2.00 		Homo sapiens
DRYAAAYADNNNRGNACA
TGTNCYNNNHTRTTTRYH		 Misc
Kulakovskiy et al.(2013)
ANDR_HUMAN.H11MO.0.A 		0.977 0.800
Ar
M09331_2.00 		Mus musculus
NRGNACABRVTGTNCY
RGNACABYVTGTNCYN		 Misc
Kulakovskiy et al.(2013)
ANDR_MOUSE.H11MO.0.A 		0.977 0.800
AR
M09610_2.00 		Homo sapiens
NRGNACABNVTGTNCY
RGNACABNVTGTNCYN		 Misc
Heinz et al.(2010)
LNCAP-AR_GSE27824 		0.977 0.800
AR
M09609_2.00 		Homo sapiens
SHDRGVACAS
STGTBCYHDS		 Misc
Heinz et al.(2010)
LNCaP-AR_GSE27824 		0.977 0.800
AR
M11157_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_01 		0.977 0.800
AR
M11158_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_02 		0.977 0.800
AR
M11159_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_03 		0.977 0.800
AR
M11160_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_04 		0.977 0.800
AR
M11161_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_11 		0.977 0.800
AR
M11162_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_13 		0.977 0.800
AR
M11163_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_14_H 		0.977 0.800
AR
M11164_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_Q2 		0.977 0.800
AR
M11165_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_Q6_01 		0.977 0.800
AR
M11166_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_Q6 		0.977 0.800
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R003636 Nuclear receptor 22 91

Links

Other Nuclear receptor family TFs
Other Geospiza fortis TFs

274 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL008417 Aedes aegypti AAEL008417 N
AALB007196 Anopheles albimanus AALB007196 N
AARA009694 Anopheles arabiensis AARA009694 N
AATE006267 Anopheles atroparvus AATE006267 N
ACAC_0000409101 Angiostrongylus cantonensis ACAC_0000409101 N
ACEP12759 Atta cephalotes ACEP12759 I
ACHR002403 Anopheles christyi ACHR002403 N
ACOC_0001323101 Angiostrongylus costaricensis ACOC_0001323101 N
ACOM033320 Anopheles coluzzii ACOM033320 N
ACUA003510 Anopheles culicifacies ACUA003510 N
ACYPI003297 Acyrthosiphon pisum ACYPI003297 I
ADAC009894 Anopheles darlingi ADAC009894 N
ADIR002941 Anopheles dirus ADIR002941 N
AEPI008570 Anopheles epiroticus AEPI008570 N
AFAF018499 Anopheles farauti AFAF018499 N
AFUN011346 Anopheles funestus AFUN011346 N
AGAP004110 Anopheles gambiae AGAP004110 N
ALNC14_126360 Albugo laibachii ALNC14_126360 N
ALUE_0001851001 Ascaris lumbricoides ALUE_0001851001 N
AMEC005071 Anopheles melas AMEC005071 N
AMEM002948 Anopheles merus AMEM002948 N
AMIN003838 Anopheles minimus AMIN003838 N
ANCCAN_29654 Ancylostoma caninum ANCCAN_29654 N
ANCCEY_08672 Ancylostoma ceylanicum ANCCEY_08672 N
AQUA009805 Anopheles quadriannulatus AQUA009805 N
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I
ASIS023527 Anopheles sinensis ASIS023527 N
ASTEI04275 Anopheles stephensi ASTEI04275 N
ASU_10445 Ascaris suum ASU_10445 N
BGIBMGA013514 Bombyx mori BGIBMGA013514 N
CapteG224864 Capitella teleta CapteG224864 I
CBN09380 Caenorhabditis brenneri CBN09380 N
Cflo_06133--XP_394373.1_APIME Camponotus floridanus Cflo_06133--XP_394373.1_APIME I
cgd2_870 Cryptosporidium parvum cgd2_870 N
CGI_10019404 Crassostrea gigas CGI_10019404 N
Chro.20098 Cryptosporidium hominis Chro.20098 N
CJA05209 Caenorhabditis japonica CJA05209 N
CLEC000086 Cimex lectularius CLEC000086 N
CLEC002888 Cimex lectularius CLEC002888 N
CMU_009510 Cryptosporidium muris CMU_009510 N
CPIJ005084 Culex quinquefasciatus CPIJ005084 N
CpipJ_CPIJ005084 Culex pipiens CpipJ_CPIJ005084 N
CRE03905 Caenorhabditis remanei CRE03905 N
D917_07703 Trichinella nativa D917_07703 N
D918_07944 Trichuris suis D918_07944 N
DAPPUDRAFT_303074 Daphnia pulex DAPPUDRAFT_303074 N
DICVIV_03175 Dictyocaulus viviparus DICVIV_03175 N
DILT_0001250601 Diphyllobothrium latum DILT_0001250601 N
EFV51436 Trichinella spiralis EFV51436 N
ENSCING00000023833 Ciona intestinalis ENSCING00000023833 N
ccdc124 Oryzias latipes ENSORLG00000015728 N
estExt_fgenesh1_kg.C_80399 Phytophthora capsici estExt_fgenesh1_kg.C_80399 N
estExt_fgenesh2_pg.C_1070085 Branchiostoma floridae estExt_fgenesh2_pg.C_1070085 N
estExt_fgenesh2_pm.C_3240002 Branchiostoma floridae estExt_fgenesh2_pm.C_3240002 N
ETH_00032160 Eimeria tenella ETH_00032160 N
F443_19335 Phytophthora parasitica F443_19335 N
GH18160 Drosophila grimshawi FBgn0125628 I
GK13574 Drosophila willistoni FBgn0215582 I
GE25578 Drosophila yakuba FBgn0242642 I
fgenesh1_pg.C_scaffold_73784000001 Phytophthora capsici fgenesh1_pg.C_scaffold_73784000001 N
fgenesh1_pm.2_#_13 Coccomyxa subellipsoidea C169 fgenesh1_pm.2_#_13 N
fgeneshCV_pg.C_scaffold_2000022 Chlorella vulgaris fgeneshCV_pg.C_scaffold_2000022 N
fgenesh_scip_prom.28083.7036 Phytophthora lateralis fgenesh_scip_prom.28083.7036 N
fgenesh_scip_prom.46568.2049 Phytophthora kernoviae fgenesh_scip_prom.46568.2049 N
GB50764 Apis mellifera GB50764 I
GPUH_0000676401 Gongylonema pulchrum GPUH_0000676401 N
GUITHDRAFT_162866 Guillardia theta GUITHDRAFT_162866 N
HCOI00594600 Haemonchus contortus HCOI00594600 N
HelroG66455 Helobdella robusta HelroG66455 N
HHAL005242-PA Halyomorpha halys HHAL005242-PA I
HMEL009197 Heliconius melpomene HMEL009197 N
HPBE_0001252601 Heligmosomoides bakeri HPBE_0001252601 N
HPLM_0000348901 Haemonchus placei HPLM_0000348901 N
Hsal_04778--XP_394373.1_APIME Harpegnathos saltator Hsal_04778--XP_394373.1_APIME I
ISCW011313 Ixodes scapularis ISCW011313 N
KGM_20190 Danaus plexippus KGM_20190 I
LCUP006380 Lucilia cuprina LCUP006380 N
LotgiG126557 Lottia gigantea LotgiG126557 N
maker-nMf.1.1.scaf18285-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf18285-snap-gene-0.4 N
maker-pir_contig_430-fgenesh-gene-0.3 Pythium irregulare maker-pir_contig_430-fgenesh-gene-0.3 N
maker-piw_contig_1911-snap-gene-0.6 Pythium iwayamai maker-piw_contig_1911-snap-gene-0.6 N
maker-pve_contig_105-snap-gene-0.29 Pythium vexans maker-pve_contig_105-snap-gene-0.29 N
MCINX012524 Melitaea cinxia MCINX012524 I
MDOA001488 Musca domestica MDOA001488 I
MhA1_Contig1250.frz3.gene10 Meloidogyne hapla MhA1_Contig1250.frz3.gene10 N
Minc12734 Meloidogyne incognita Minc12734 N
ML11467a Mnemiopsis leidyi ML11467a N
NBR_0000605501 Nippostrongylus brasiliensis NBR_0000605501 N
NCLIV_051130 Neospora caninum NCLIV_051130 N
NECAME_12352 Necator americanus NECAME_12352 N
NEMVEDRAFT_v1g201358 Nematostella vectensis NEMVEDRAFT_v1g201358 I
NV13812 Nasonia vitripennis NV13812 I
O9G_000624 Rozella allomycis O9G_000624 N
Ocbimv22013575m.g Octopus bimaculoides Ocbimv22013575m.g I
OESDEN_05486 Oesophagostomum dentatum OESDEN_05486 N
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I
PEQ_0000413701 Parascaris equorum PEQ_0000413701 N
PHUM036320 Pediculus humanus PHUM036320 N
Phyra74523 Phytophthora ramorum Phyra74523 N
Physo132366 Phytophthora sojae Physo132366 N
PYU1_G003004 Pythium ultimum PYU1_G003004 N
RPRC009760 Rhodnius prolixus RPRC009760 N
SBAD_0000307901 Soboliphyme baturini SBAD_0000307901 N
SINV12391 Solenopsis invicta SINV12391 I
SPRG_06372 Saprolegnia parasitica SPRG_06372 N
SPU_001776 Strongylocentrotus purpuratus SPU_001776 N
TC004658 Tribolium castaneum TC004658 N
TCLT_0001081001 Thelazia callipaeda TCLT_0001081001 N
TELCIR_11967 Teladorsagia circumcincta TELCIR_11967 N
tetur18g00680 Tetranychus urticae tetur18g00680 I
TGME49_037260 Toxoplasma gondii TGME49_037260 N
TMUE_s0148001000 Trichuris muris TMUE_s0148001000 N
TTRE_0000309701 Trichuris trichiura TTRE_0000309701 N
Y73E7A.1 Caenorhabditis elegans WBGene00022268 N