ENSPFOG00000013017 (Poecilia formosa)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSPFOG00000013017 T313604_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSORLG00000007805
M02435_2.00 		Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS		 PBM
Weirauch et al.(2014)
pTH9277 		0.932 0.932
ENSGACG00000007469
M02432_2.00 		Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN		 PBM
Weirauch et al.(2014)
pTH9179 		0.909 0.909
ENSACAG00000012432
M02430_2.00 		Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN		 PBM
Weirauch et al.(2014)
pTH9220 		0.886 0.886
ENSMGAG00000009953
M02433_2.00 		Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649 		0.864 0.864
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.864 0.864
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.818 0.818
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPFOP00000013032 Pipsqueak 519 563

Links

Other Pipsqueak family TFs
Other Poecilia formosa TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29864.m001444 Ricinus communis 29864.m001444 N 0.000
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N 0.000
SIGD Arabidopsis thaliana AT5G13730 N 0.000
Bo2g011520 Brassica oleracea Bo2g011520 N 0.000
Bo9g166510 Brassica oleracea Bo9g166510 N 0.000
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N 0.000
Bra008807 Brassica rapa Bra008807 N 0.000
Bra023430 Brassica rapa Bra023430 N 0.000
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N 0.000
Carubv10001054m.g Capsella rubella Carubv10001054m.g N 0.000
cassava43094.valid.m1 Manihot esculenta cassava43094.valid.m1 N 0.000
Ciclev10033747m.g Citrus clementina Ciclev10033747m.g N 0.000
evm.TU.supercontig_125.39 Carica papaya evm.TU.supercontig_125.39 N 0.000
gene29494-v1.0-hybrid Fragaria vesca gene29494-v1.0-hybrid N 0.000
GSMUA_Achr4G18530_001 Musa acuminata GSMUA_Achr4G18530_001 N 0.000
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N 0.000
PDK_20s1385451g001 Phoenix dactylifera PDK_20s1385451g001 N 0.000
PK06863.1 Cannabis sativa PK06863.1 N 0.000
Pm016510 Prunus mume Pm016510 N 0.000
SIG4 Populus trichocarpa POPTR_0009s06210 N 0.000
PRUPE_ppa017025mg Prunus persica PRUPE_ppa017025mg N 0.000
SapurV1A.0027s0740 Salix purpurea SapurV1A.0027s0740 N 0.000
SapurV1A.4644s0020 Salix purpurea SapurV1A.4644s0020 N 0.000
Thhalv10013654m.g Eutrema salsugineum Thhalv10013654m.g N 0.000
SIG4 Vitis vinifera VIT_13s0064g00190 N 0.000