Carubv10001054m.g (Capsella rubella)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Carubv10001054m.g T324162_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001054m Sigma 70 183 253

Links

Other Sigma 70 family TFs
Other Capsella rubella TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SIGD Arabidopsis thaliana AT5G13730 N 1.000
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N 1.000
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N 1.000
Bo2g011520 Brassica oleracea Bo2g011520 N 0.986
Bo9g166510 Brassica oleracea Bo9g166510 N 0.986
Bra008807 Brassica rapa Bra008807 N 0.986
Bra023430 Brassica rapa Bra023430 N 0.986
Thhalv10013654m.g Eutrema salsugineum Thhalv10013654m.g N 0.986
SIG4 Arabidopsis lyrata scaffold_601382.1 N 0.875
SIG4 Vitis vinifera VIT_13s0064g00190 N 0.857
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N 0.845
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N 0.845
Ciclev10033747m.g Citrus clementina Ciclev10033747m.g N 0.831
SIG4 Populus trichocarpa POPTR_0009s06210 N 0.817
evm.TU.supercontig_125.39 Carica papaya evm.TU.supercontig_125.39 N 0.817
SapurV1A.0027s0740 Salix purpurea SapurV1A.0027s0740 N 0.817
SapurV1A.4644s0020 Salix purpurea SapurV1A.4644s0020 N 0.817
AMTR_s00025p00248060 Amborella trichopoda AMTR_s00025p00248060 N 0.803
GSMUA_Achr4G18530_001 Musa acuminata GSMUA_Achr4G18530_001 N 0.789
PDK_20s1385451g001 Phoenix dactylifera PDK_20s1385451g001 N 0.789
gene29494-v1.0-hybrid Fragaria vesca gene29494-v1.0-hybrid N 0.775
PK06863.1 Cannabis sativa PK06863.1 N 0.775
cassava43094.valid.m1 Manihot esculenta cassava43094.valid.m1 N 0.761
LjSGA_045184.1 Lotus japonicus LjSGA_045184.1 N 0.761
PRUPE_ppa017025mg Prunus persica PRUPE_ppa017025mg N 0.746
Pm016510 Prunus mume Pm016510 N 0.746
29864.m001444 Ricinus communis 29864.m001444 N 0.746
MTR_3g033420 Medicago truncatula MTR_3g033420 N 0.732
PGSC0003DMG402006783 Solanum tuberosum PGSC0003DMG402006783 N 0.732
Solyc01g087690.1 Solanum lycopersicum Solyc01g087690.1 N 0.732
Ca_22857 Cicer arietinum Ca_22857 N 0.732
Cucsa.248920 Cucumis sativus Cucsa.248920 N 0.718
mgf003626m Mimulus guttatus mgf003626m N 0.718
Cla017559 Citrullus lanatus Cla017559 N 0.704