LjSGA_045184.1 (Lotus japonicus)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 LjSGA_045184.1 T324294_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_045184.1 Sigma 70 46 116

Links

Other Sigma 70 family TFs
Other Lotus japonicus TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_3g033420 Medicago truncatula MTR_3g033420 N 0.859
Ca_22857 Cicer arietinum Ca_22857 N 0.803
evm.TU.supercontig_125.39 Carica papaya evm.TU.supercontig_125.39 N 0.775
SIGD Arabidopsis thaliana AT5G13730 N 0.761
Bo2g011520 Brassica oleracea Bo2g011520 N 0.761
Bo9g166510 Brassica oleracea Bo9g166510 N 0.761
Bra008807 Brassica rapa Bra008807 N 0.761
Bra023430 Brassica rapa Bra023430 N 0.761
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N 0.761
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N 0.761
Carubv10001054m.g Capsella rubella Carubv10001054m.g N 0.761
Thhalv10013654m.g Eutrema salsugineum Thhalv10013654m.g N 0.761
PK06863.1 Cannabis sativa PK06863.1 N 0.746
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N 0.732
Cucsa.248920 Cucumis sativus Cucsa.248920 N 0.718
gene29494-v1.0-hybrid Fragaria vesca gene29494-v1.0-hybrid N 0.718
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N 0.718
SIG4 Vitis vinifera VIT_13s0064g00190 N 0.704
Cla017559 Citrullus lanatus Cla017559 N 0.704
Ciclev10033747m.g Citrus clementina Ciclev10033747m.g N 0.704
SIG4 Arabidopsis lyrata scaffold_601382.1 N 0.703