Gfo_R000714 (Geospiza fortis)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 Gfo_R000714 T319661_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.891 0.891
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.891 0.891
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.891 0.891
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.891 0.891
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.891 0.891
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.891 0.891
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.891 0.891
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.891 0.891
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.891 0.891
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.891 0.891
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.891 0.891
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.891 0.891
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.871 0.871
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.871 0.871
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.871 0.871
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.871 0.871
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.871 0.871
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.871 0.871
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.871 0.871
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.871 0.871
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.871 0.871
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.871 0.871
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.871 0.871
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.871 0.871
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.842 0.842
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.842 0.842
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.842 0.842
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.842 0.842
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.842 0.842
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.842 0.842
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.842 0.842
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.842 0.842
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.842 0.842
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.842 0.842
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.842 0.842
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.842 0.842
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.713 0.713
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.713 0.713
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.713 0.713
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.713 0.713
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R000714 Runt 160 261

Links

Other Runt family TFs
Other Geospiza fortis TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL006160 Aedes aegypti AAEL006160 I 0.752
AALB007752 Anopheles albimanus AALB007752 I 0.725
Aan_R002212 Calypte anna Aan_R002212 I 0.814
Aan_R005895 Calypte anna Aan_R005895 I 0.967
Aan_R007315 Calypte anna Aan_R007315 I 0.933
AATE002063 Anopheles atroparvus AATE002063 I 0.752
ACEP16400 Atta cephalotes ACEP16400 I 0.762
ACYPI001442 Acyrthosiphon pisum ACYPI001442 I 0.723
ACYPI007541 Acyrthosiphon pisum ACYPI007541 I 0.733
Afo_R004888 Aptenodytes forsteri Afo_R004888 I 0.933
Afo_R008955 Aptenodytes forsteri Afo_R008955 I 0.976
Afo_R012718 Aptenodytes forsteri Afo_R012718 I 0.851
Alligator_sinensis_CCG010991.1 Alligator sinensis Alligator_sinensis_CCG010991.1 I 0.960
AMAM011616 Anopheles maculatus AMAM011616 I 0.720
AQUA009446 Anopheles quadriannulatus AQUA009446 I 0.720
ASTEI07771 Anopheles stephensi ASTEI07771 I 0.752
BGIBMGA008906 Bombyx mori BGIBMGA008906 I 0.703
Brh_R000794 Buceros rhinoceros Brh_R000794 I 1.000
Brh_R001637 Buceros rhinoceros Brh_R001637 I 0.933
Cflo_03909--XP_394016.2_APIME Camponotus floridanus Cflo_03909--XP_394016.2_APIME I 0.743
Cmyd_10020455 Chelonia mydas Cmyd_10020455 I 0.901
CPIJ016825 Culex quinquefasciatus CPIJ016825 I 0.711
CpipJ_CPIJ016825 Culex pipiens CpipJ_CPIJ016825 I 0.711
RUNX2 Anolis carolinensis ENSACAG00000013003 I 0.901
RUNX3 Anolis carolinensis ENSACAG00000017855 I 0.957
ENSAMEG00000009223 Ailuropoda melanoleuca ENSAMEG00000009223 I 0.989
ENSAMXG00000017349 Astyanax mexicanus ENSAMXG00000017349 I 0.881
ENSAPLG00000007026 Anas platyrhynchos ENSAPLG00000007026 I 0.895
ENSAPLG00000011653 Anas platyrhynchos ENSAPLG00000011653 I 1.000
RUNX3 Bos taurus ENSBTAG00000019800 I 0.871
ENSBTAP00000006227-D1 Bos grunniens ENSBTAP00000006227-D1 I 0.989
ENSCAFG00000031052 Canis familiaris ENSCAFG00000031052 I 0.947
ENSCING00000002253 Ciona intestinalis ENSCING00000002253 I 0.853
RUNX1 Callithrix jacchus ENSCJAG00000002816 I 0.947
runx2a Danio rerio ENSDARG00000040261 I 0.881
runx2b Danio rerio ENSDARG00000059233 I 0.949
CABZ01102124.1 Danio rerio ENSDARG00000103592 I 0.921
RUNX1 Dasypus novemcinctus ENSDNOG00000015041 I 0.832
RUNX2 Equus caballus ENSECAG00000020875 I 0.709
ENSFALG00000001493 Ficedula albicollis ENSFALG00000001493 I 0.911
RUNX2 Felis catus ENSFCAG00000022480 I 0.989
ENSFCAG00000029032 Felis catus ENSFCAG00000029032 I 0.938
RUNX2 Homo sapiens ENSG00000124813 D 0.871
runx2b Gasterosteus aculeatus ENSGACG00000012322 I 0.851
ENSGALG00000026484 Gallus gallus ENSGALG00000026484 I 0.902
ENSLACG00000013776 Latimeria chalumnae ENSLACG00000013776 I 0.812
ENSLACG00000015930 Latimeria chalumnae ENSLACG00000015930 I 0.792
RUNX2 Loxodonta africana ENSLAFG00000005054 I 0.989
ENSMGAG00000002035 Meleagris gallopavo ENSMGAG00000002035 I 0.947
RUNX2 Meleagris gallopavo ENSMGAG00000014267 I 1.000
ENSMGAG00000014534 Meleagris gallopavo ENSMGAG00000014534 I 0.911
RUNX2 Myotis lucifugus ENSMLUG00000000514 I 0.989
RUNX3 Myotis lucifugus ENSMLUG00000003395 I 0.861
RUNX1 Macaca mulatta ENSMMUG00000001649 I 0.947
RUNX1 Monodelphis domestica ENSMODG00000021051 I 0.842
ENSMPUG00000001340 Mustela putorius furo ENSMPUG00000001340 I 0.832
ENSMPUG00000012508 Mustela putorius furo ENSMPUG00000012508 I 0.776
ENSMPUG00000015804 Mustela putorius furo ENSMPUG00000015804 I 0.871
Runx1 Mus musculus ENSMUSG00000022952 D 0.822
Runx2 Mus musculus ENSMUSG00000039153 D 0.871
ENSNLEG00000003611 Nomascus leucogenys ENSNLEG00000003611 I 0.774
ENSNLEG00000009021 Nomascus leucogenys ENSNLEG00000009021 I 0.956
RUNX2 Ornithorhynchus anatinus ENSOANG00000008265 I 0.989
ENSOANG00000031074 Ornithorhynchus anatinus ENSOANG00000031074 I 0.933
ENSOARG00000013599 Ovis aries ENSOARG00000013599 I 0.842
ENSOCUG00000011739 Oryctolagus cuniculus ENSOCUG00000011739 I 0.989
ENSOPRG00000000765 Ochotona princeps ENSOPRG00000000765 I 0.842
ENSP00000352514 Macaca fascicularis ENSP00000352514 I 0.857
ENSP00000382800 Macaca fascicularis ENSP00000382800 I 0.848
ENSPPYG00000001714 Pongo abelii ENSPPYG00000001714 I 0.861
ENSPSIG00000014293 Pelodiscus sinensis ENSPSIG00000014293 I 0.989
RUNX1 Pteropus vampyrus ENSPVAG00000001606 I 0.842
ENSSHAG00000012559 Sarcophilus harrisii ENSSHAG00000012559 I 0.967
ENSSHAG00000014782 Sarcophilus harrisii ENSSHAG00000014782 I 0.842
ENSSSCG00000025551 Sus scrofa ENSSSCG00000025551 I 0.982
ENSSTOG00000020082 Ictidomys tridecemlineatus ENSSTOG00000020082 I 0.930
RUNX2 Tupaia belangeri ENSTBEG00000000948 I 0.989
RUNX2 Taeniopygia guttata ENSTGUG00000013249 I 0.901
runx3 Tetraodon nigroviridis ENSTNIG00000016911 I 0.832
runx2 Takifugu rubripes ENSTRUG00000003501 I 0.842
runx1 Takifugu rubripes ENSTRUG00000012611 I 0.802
ENSTSYG00000005097 Tarsius syrichta ENSTSYG00000005097 I 0.812
RUNX1 Tursiops truncatus ENSTTRG00000014160 I 0.812
ENSXMAG00000006715 Xiphophorus maculatus ENSXMAG00000006715 I 0.703
GA13742 Drosophila pseudoobscura FBgn0073778 I 0.703
GF15967 Drosophila ananassae FBgn0092990 I 0.703
GG19691 Drosophila erecta FBgn0111893 I 0.703
GH17737 Drosophila grimshawi FBgn0125207 I 0.703
GL15800 Drosophila persimilis FBgn0153404 I 0.703
GM23044 Drosophila sechellia FBgn0177912 I 0.703
GD17495 Drosophila simulans FBgn0189047 I 0.703
GJ19245 Drosophila virilis FBgn0206390 I 0.703
GK19810 Drosophila willistoni FBgn0221808 I 0.703
GE17890 Drosophila yakuba FBgn0235328 I 0.703
RunxB Drosophila melanogaster FBgn0259162 I 0.703
Gfo_R011596 Geospiza fortis Gfo_R011596 I 0.727
Gfo_R013848 Geospiza fortis Gfo_R013848 I 0.947
HMEL009842 Heliconius melpomene HMEL009842 I 0.769
HMEL014739 Heliconius melpomene HMEL014739 I 0.700
Hsal_04635--XP_394013.3_APIME Harpegnathos saltator Hsal_04635--XP_394013.3_APIME I 0.723
Hsal_12319--XP_394016.2_APIME Harpegnathos saltator Hsal_12319--XP_394016.2_APIME I 0.743
KGM_21065 Danaus plexippus KGM_21065 I 0.700
LCUP002647 Lucilia cuprina LCUP002647 I 0.744
LCUP002656 Lucilia cuprina LCUP002656 I 0.738
MCINX000302 Melitaea cinxia MCINX000302 I 0.733
MESCA007078 Megaselia scalaris MESCA007078 I 0.730
MESCA007079 Megaselia scalaris MESCA007079 I 0.800
PPAI006591 Phlebotomus papatasi PPAI006591 I 0.708
Pvit_01165 Pogona vitticeps Pvit_01165 I 0.901
RPRC005391 Rhodnius prolixus RPRC005391 I 0.752
SINV13317 Solenopsis invicta SINV13317 I 0.743
Tal_R011874 Tyto alba Tal_R011874 I 1.000
TC006536 Tribolium castaneum TC006536 I 0.743
TC006542 Tribolium castaneum TC006542 I 0.713
tetur01g02340 Tetranychus urticae tetur01g02340 I 0.743
runx2.L Xenopus laevis XB-GENE-864817 I 0.851
XP_002939386 Xenopus tropicalis XP_002939386 I 0.842
XP_002939387 Xenopus tropicalis XP_002939387 I 0.842