LDEC006650 (Leptinotarsa decemlineata)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 LDEC006650 T319696_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.730 0.730
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.730 0.730
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.730 0.730
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.730 0.730
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.730 0.730
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.730 0.730
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.730 0.730
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.730 0.730
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.730 0.730
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.730 0.730
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.730 0.730
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.730 0.730
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.710 0.710
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.710 0.710
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.710 0.710
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.710 0.710
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.710 0.710
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.710 0.710
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.710 0.710
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.710 0.710
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.710 0.710
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.710 0.710
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.710 0.710
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.710 0.710
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.700 0.700
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.700 0.700
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.700 0.700
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.700 0.700
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.700 0.700
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.700 0.700
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.700 0.700
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.700 0.700
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.700 0.700
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.700 0.700
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.700 0.700
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LDEC006650-PA Runt 41 140

Links

Other Runt family TFs
Other Leptinotarsa decemlineata TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AFUN010423 Anopheles funestus AFUN010423 I 0.700
AMAM016300 Anopheles maculatus AMAM016300 I 0.700
AMIN005759 Anopheles minimus AMIN005759 I 0.700
AMTR_s00004p00169140 Amborella trichopoda AMTR_s00004p00169140 N 0.000
ASTEI07770 Anopheles stephensi ASTEI07770 I 0.700
BGIOSGA035814 Oryza indica BGIOSGA035814 N 0.000
BRADI4G21540 Brachypodium distachyon BRADI4G21540 N 0.000
Cucsa.132180 Cucumis sativus Cucsa.132180 N 0.000
evm.TU.supercontig_10.263 Carica papaya evm.TU.supercontig_10.263 N 0.000
F775_32078 Aegilops tauschii F775_32078 N 0.000
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N 0.000
GRMZM2G022365 Zea mays GRMZM2G022365 N 0.000
GRMZM2G157470 Zea mays GRMZM2G157470 N 0.000
GSMUA_Achr2G12870_001 Musa acuminata GSMUA_Achr2G12870_001 N 0.000
GSMUA_Achr7G01310_001 Musa acuminata GSMUA_Achr7G01310_001 N 0.000
LPERR12G16300 Leersia perrieri LPERR12G16300 N 0.000
MDP0000152128 Malus domestica MDP0000152128 N 0.000
MDP0000574053 Malus domestica MDP0000574053 N 0.000
OB12G26010 Oryza brachyantha OB12G26010 N 0.000
OGLUM12G20810 Oryza glumaepatula OGLUM12G20810 N 0.000
OMERI12G13490 Oryza meridionalis OMERI12G13490 N 0.000
ONIVA02G25900 Oryza nivara ONIVA02G25900 N 0.000
OPUNC12G17310 Oryza punctata OPUNC12G17310 N 0.000
ORGLA12G0164400 Oryza glaberrima ORGLA12G0164400 N 0.000
ORUFI12G21360 Oryza rufipogon ORUFI12G21360 N 0.000
OS12G0620400 Oryza sativa OS12G0620400 N 0.000
Pavir.Ca02859 Panicum virgatum Pavir.Ca02859 N 0.000
Pavir.Ia01134 Panicum virgatum Pavir.Ia01134 N 0.000
Pavir.Ib04134 Panicum virgatum Pavir.Ib04134 N 0.000
Pavir.J29994 Panicum virgatum Pavir.J29994 N 0.000
PK04144.1 Cannabis sativa PK04144.1 N 0.000
Pm027560 Prunus mume Pm027560 N 0.000
PRUPE_ppa008789mg Prunus persica PRUPE_ppa008789mg N 0.000
Sb01g013320 Sorghum bicolor Sb01g013320 N 0.000
Sb08g022000 Sorghum bicolor Sb08g022000 N 0.000
Si035862m.g Setaria italica Si035862m.g N 0.000
Traes_5AS_BABE20FBA Triticum aestivum Traes_5AS_BABE20FBA N 0.000
Traes_5BS_19E54A2E0 Triticum aestivum Traes_5BS_19E54A2E0 N 0.000
Traes_5DS_438FF99FC Triticum aestivum Traes_5DS_438FF99FC N 0.000
TRIUR3_27778 Triticum urartu TRIUR3_27778 N 0.000
VIT_11s0016g05580 Vitis vinifera VIT_11s0016g05580 N 0.000