gene01338-v1.0-hybrid (Fragaria vesca)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 gene01338-v1.0-hybrid T323477_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.909 0.747
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna01338.1-v1.0-hybrid SBP 100 174

Links

Other SBP family TFs
Other Fragaria vesca TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003797 Calypte anna Aan_R003797 I
Aan_R007225 Calypte anna Aan_R007225 I
Afo_R002063 Aptenodytes forsteri Afo_R002063 I
Afo_R011673 Aptenodytes forsteri Afo_R011673 I
Alligator_sinensis_CCG002397.1 Alligator sinensis Alligator_sinensis_CCG002397.1 I
Alligator_sinensis_CCG004214.1 Alligator sinensis Alligator_sinensis_CCG004214.1 I
Alligator_sinensis_CCG020422.1 Alligator sinensis Alligator_sinensis_CCG020422.1 I
Brh_R005039 Buceros rhinoceros Brh_R005039 I
Brh_R009446 Buceros rhinoceros Brh_R009446 I
Cmyd_10010632 Chelonia mydas Cmyd_10010632 I
TFEB Anolis carolinensis ENSACAG00000002664 I
MITF Anolis carolinensis ENSACAG00000013586 I
TFE3 Anolis carolinensis ENSACAG00000022140 I
ENSAMEG00000013103 Ailuropoda melanoleuca ENSAMEG00000013103 I
ENSAMEG00000017117 Ailuropoda melanoleuca ENSAMEG00000017117 I
ENSAMXG00000007343 Astyanax mexicanus ENSAMXG00000007343 I
ENSAPLG00000010269 Anas platyrhynchos ENSAPLG00000010269 I
ENSAPLG00000011965 Anas platyrhynchos ENSAPLG00000011965 I
MITF Bos taurus ENSBTAG00000006679 I
TFEB Bos taurus ENSBTAG00000012384 I
ENSBTAP00000053693-D1 Bos grunniens ENSBTAP00000053693-D1 I
TFEB Canis familiaris ENSCAFG00000001599 I
MITF Canis familiaris ENSCAFG00000006496 I
TFEB Callithrix jacchus ENSCJAG00000004199 I
MITF Callithrix jacchus ENSCJAG00000013260 I
TFEB Cavia porcellus ENSCPOG00000008027 I
TFE3 Cavia porcellus ENSCPOG00000012410 I
MITF Cavia porcellus ENSCPOG00000014963 I
ENSCSAG00000011274 Chlorocebus sabaeus ENSCSAG00000011274 I
ENSCSAG00000011595 Chlorocebus sabaeus ENSCSAG00000011595 I
mitfa Danio rerio ENSDARG00000003732 I
tfeb Danio rerio ENSDARG00000010794 I
mitfb Danio rerio ENSDARG00000037833 I
MITF Dasypus novemcinctus ENSDNOG00000037006 I
Mitf Dipodomys ordii ENSDORG00000003336 I
ENSDORG00000013258 Dipodomys ordii ENSDORG00000013258 I
MITF Equus caballus ENSECAG00000005360 I
TFEB Equus caballus ENSECAG00000019762 I
MITF Erinaceus europaeus ENSEEUG00000005163 I
ENSFALG00000003097 Ficedula albicollis ENSFALG00000003097 I
ENSFALG00000013383 Ficedula albicollis ENSFALG00000013383 I
TFEB Felis catus ENSFCAG00000011521 I
MITF Felis catus ENSFCAG00000024419 I
TFEB Homo sapiens ENSG00000112561 D
MITF Homo sapiens ENSG00000187098 D
mitfb Gasterosteus aculeatus ENSGACG00000003425 I
tfe3b Gasterosteus aculeatus ENSGACG00000010355 I
mitfa Gasterosteus aculeatus ENSGACG00000011875 I
ENSGALG00000003404 Gallus gallus ENSGALG00000003404 I
ENSGALG00000007679 Gallus gallus ENSGALG00000007679 I
TFEB Gorilla gorilla ENSGGOG00000002683 I
MITF Gorilla gorilla ENSGGOG00000024338 I
ENSGMOG00000007421 Gadus morhua ENSGMOG00000007421 I
ENSGMOG00000010175 Gadus morhua ENSGMOG00000010175 I
ENSLACG00000011547 Latimeria chalumnae ENSLACG00000011547 I
ENSLACG00000013218 Latimeria chalumnae ENSLACG00000013218 I
TFEB Loxodonta africana ENSLAFG00000003059 I
MITF Loxodonta africana ENSLAFG00000023153 I
ENSLOCG00000010058 Lepisosteus oculatus ENSLOCG00000010058 I
ENSLOCG00000012145 Lepisosteus oculatus ENSLOCG00000012145 I
TFEB Meleagris gallopavo ENSMGAG00000006159 I
MITF Meleagris gallopavo ENSMGAG00000009507 I
ENSMICG00000002894 Microcebus murinus ENSMICG00000002894 I
TFEB Microcebus murinus ENSMICG00000015674 I
TFEB Myotis lucifugus ENSMLUG00000000232 I
MITF Myotis lucifugus ENSMLUG00000002587 I
MITF Macaca mulatta ENSMMUG00000002100 I
TFEB Macaca mulatta ENSMMUG00000004690 I
MITF Monodelphis domestica ENSMODG00000003754 I
TFE3 Monodelphis domestica ENSMODG00000009925 I
TFEB Monodelphis domestica ENSMODG00000012916 I
ENSMPUG00000013594 Mustela putorius furo ENSMPUG00000013594 I
ENSMPUG00000016972 Mustela putorius furo ENSMPUG00000016972 I
Tfe3 Mus musculus ENSMUSG00000000134 D
Tfeb Mus musculus ENSMUSG00000023990 D
Mitf Mus musculus ENSMUSG00000035158 D
ENSNLEG00000002357 Nomascus leucogenys ENSNLEG00000002357 I
ENSNLEG00000004906 Nomascus leucogenys ENSNLEG00000004906 I
ENSOANG00000012406 Ornithorhynchus anatinus ENSOANG00000012406 I
TFE3 Ornithorhynchus anatinus ENSOANG00000013574 I
TFEB Ornithorhynchus anatinus ENSOANG00000015438 I
ENSOARG00000002322 Ovis aries ENSOARG00000002322 I
ENSOARG00000009833 Ovis aries ENSOARG00000009833 I
MITF Oryctolagus cuniculus ENSOCUG00000002190 I
TFEB Oryctolagus cuniculus ENSOCUG00000027474 I
MITF Otolemur garnettii ENSOGAG00000000043 I
TFEB Otolemur garnettii ENSOGAG00000010116 I
ENSONIG00000016952 Oreochromis niloticus ENSONIG00000016952 I
ENSONIG00000019306 Oreochromis niloticus ENSONIG00000019306 I
ENSONIG00000020270 Oreochromis niloticus ENSONIG00000020270 I
mitfa Oryzias latipes ENSORLG00000003123 I
mitfb Oryzias latipes ENSORLG00000013461 I
tfeb Oryzias latipes ENSORLG00000015866 I
ENSP00000343948 Macaca fascicularis ENSP00000343948 I
ENSP00000391803 Macaca fascicularis ENSP00000391803 I
ENSPANG00000009713 Papio anubis ENSPANG00000009713 I
ENSPANG00000011565 Papio anubis ENSPANG00000011565 I
ENSPFOG00000006677 Poecilia formosa ENSPFOG00000006677 I
ENSPFOG00000007171 Poecilia formosa ENSPFOG00000007171 I
ENSPFOG00000017022 Poecilia formosa ENSPFOG00000017022 I
ENSPMAG00000001002 Petromyzon marinus ENSPMAG00000001002 I
ENSPMAG00000004927 Petromyzon marinus ENSPMAG00000004927 I
ENSPPYG00000013725 Pongo abelii ENSPPYG00000013725 I
ENSPPYG00000016599 Pongo abelii ENSPPYG00000016599 I
ENSPSIG00000010995 Pelodiscus sinensis ENSPSIG00000010995 I
ENSPSIG00000012120 Pelodiscus sinensis ENSPSIG00000012120 I
MITF Pan troglodytes ENSPTRG00000015100 I
TFEB Pan troglodytes ENSPTRG00000018157 I
TFEB Pteropus vampyrus ENSPVAG00000007581 I
Mitf Rattus norvegicus ENSRNOG00000008658 I
Tfe3 Rattus norvegicus ENSRNOG00000009605 I
Tfeb Rattus norvegicus ENSRNOG00000014666 I
MITF Sorex araneus ENSSARG00000002538 I
ENSSHAG00000009705 Sarcophilus harrisii ENSSHAG00000009705 I
ENSSHAG00000017522 Sarcophilus harrisii ENSSHAG00000017522 I
TFEB Sus scrofa ENSSSCG00000001621 I
ENSSTOG00000014237 Ictidomys tridecemlineatus ENSSTOG00000014237 I
ENSSTOG00000015338 Ictidomys tridecemlineatus ENSSTOG00000015338 I
MITF Tupaia belangeri ENSTBEG00000017713 I
MITF Taeniopygia guttata ENSTGUG00000009847 I
ENSTGUG00000017433 Taeniopygia guttata ENSTGUG00000017433 I
tfeb Tetraodon nigroviridis ENSTNIG00000007281 I
mitfa Tetraodon nigroviridis ENSTNIG00000007360 I
mitfb Tetraodon nigroviridis ENSTNIG00000012564 I
tfeb Takifugu rubripes ENSTRUG00000000653 I
mitfa Takifugu rubripes ENSTRUG00000001600 I
mitfb Takifugu rubripes ENSTRUG00000012080 I
ENSTSYG00000011324 Tarsius syrichta ENSTSYG00000011324 I
MITF Tursiops truncatus ENSTTRG00000007072 I
ENSTTRG00000016385 Tursiops truncatus ENSTTRG00000016385 I
ENSXMAG00000002200 Xiphophorus maculatus ENSXMAG00000002200 I
ENSXMAG00000003856 Xiphophorus maculatus ENSXMAG00000003856 I
ENSXMAG00000016472 Xiphophorus maculatus ENSXMAG00000016472 I
Gfo_R002984 Geospiza fortis Gfo_R002984 I
Gfo_R014572 Geospiza fortis Gfo_R014572 I
Myotis_brandtii_Mitf_10022588 Myotis brandtii Myotis_brandtii_Mitf_10022588 I
Myotis_brandtii_TFEB_10015405 Myotis brandtii Myotis_brandtii_TFEB_10015405 I
Ogr06907 Ophisaurus gracilis Ogr06907 I
Pvit_00330 Pogona vitticeps Pvit_00330 I
Pvit_01233 Pogona vitticeps Pvit_01233 I
Pvit_06044 Pogona vitticeps Pvit_06044 I
Tal_R001329 Tyto alba Tal_R001329 I
Tal_R006591 Tyto alba Tal_R006591 I
mitf Xenopus tropicalis XB-GENE-484962 I
mitf.L Xenopus laevis XB-GENE-6252679 I
mitf.S Xenopus laevis XB-GENE-6464338 I